Tper020662.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01004223.1:3458-4519[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-12 5e-09 36.3 0.0 3 40 20 58 19 60 0.92 2 2 2 1.2e+03 -0.1 0.0 21 28 298 305 296 305 0.91
Sequence Information
- Coding Sequence
- ATGCCCAGGCGATACATCACGCCTTtagggcaaaaaaaattcgtcaactaCCCGCAGACTAGGATGGAGGAAGCAGTTAGGGcggtgaaaagaaaaaaatattcaatccgAAAAGCGgcggaaaaattttcggtgcCGAAATCCACTCTATGTGATAAAGTGCGTCAAACGCATCCTTTGCCCTACGGAGGGCAAACTGGACTTACGCAGGATGAAGAAGCAGAACTGGAACTGGTACAAGTGATCTTATTAAGTGCGAAGTGGAGATACCCGATGACCGGAACTGATTTGagATTGATGGTGAAAGCATACTTAGATTCAGCTGGCAGACGAATTACgagatttaagaaaaattatccggGTTACGAATggttaaaatcatttttaaagcgGCATCGTGAATTAGTGACCAGATTGAGCGAAAACATAAAACTGGCTCGGGCAAATGTGACCAAAGAAACAATTTCCAATTACTTCAAGAATTTAGAACCACTGATTAAAGATATGCCCCCGGAAAACATCGTCAACTACGACGAAACTAACTTCTCAGATGACCCATCATCTGAACGAGTCATTGCGAAACGTGGTACCAAACGAGCTGAAAACGTatgtaatttctcaaaaaccaatACATCGGTGATGATGGCCACCAGTGCTTCCGGATATTCTCTTCCTCCATATATAATCTATAAATCTGTCGACATGTGGGATACCTGGGTCGAAGGTGGACCCCCTGGTGCTCGTTATAACCGGACAAAGAGTGGATGGATGGATATGAGAGTGTTCTCAGATTGGTTCGAATCTATTGCGCTGCCCTacctaaaaagaaaagaggggaaaaaactCTTAATTGGCGATAACTTAAGCAGCCTCCTCTCTGTGGATGTCATAAAGGCCTGCGAAAagtatgacattttttcaaaaatcgttatggGTAGAGGAAGGATAGGGGTACAAAATGAgccaaattcgaaatttctaaCTTTATAA
- Protein Sequence
- MPRRYITPLGQKKFVNYPQTRMEEAVRAVKRKKYSIRKAAEKFSVPKSTLCDKVRQTHPLPYGGQTGLTQDEEAELELVQVILLSAKWRYPMTGTDLRLMVKAYLDSAGRRITRFKKNYPGYEWLKSFLKRHRELVTRLSENIKLARANVTKETISNYFKNLEPLIKDMPPENIVNYDETNFSDDPSSERVIAKRGTKRAENVCNFSKTNTSVMMATSASGYSLPPYIIYKSVDMWDTWVEGGPPGARYNRTKSGWMDMRVFSDWFESIALPYLKRKEGKKLLIGDNLSSLLSVDVIKACEKYDIFSKIVMGRGRIGVQNEPNSKFLTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -