Tper010670.1
Basic Information
- Insect
- Trionymus perrisii
- Gene Symbol
- -
- Assembly
- GCA_900050545.1
- Location
- FIZV01064700.1:1-1123[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.28 1.6e+02 2.7 0.0 28 39 1 12 1 15 0.87 2 3 2.5e-19 1.5e-16 60.5 0.0 1 45 29 74 29 74 0.97 3 3 3.5e-17 2e-14 53.6 0.1 2 43 82 124 81 125 0.95
Sequence Information
- Coding Sequence
- ATTCCTAGTAGCACTCTTTACAAAATAGCTAGACGCGAAGGTATAAGATTGGCAGCACCATTCAACGCAGCTCCCACAACTTGGACTCAAGATGACTTGGAAAGAGCCCTGGAAGCGATCAGAACTGGACAAACGACAGTTCAAAAGGCAGCTACCGAATATGGTATTCCTACAGGCACACTATACGGACGTTGTAAACGAGAGAAAATCGAATTATCTCGTAGCAATCCTACCCCTTGGTCTCAAGATGCCATGTCTGAAGCTTTGGAAGCCATCAGATTGGGTCAGATGAGTATCAATCAAGCGTCCATACATTACAATCTACCTTATTCTTCGTTATACGGTAGATTTAGACGAGGTAAATACGAAGCCGACCATCTGGATCATGAAGACGACGACAACACCGGAGTCGTGGTAGACGTCCAACCCGGCGGTAgtcaacaacaacagcagcagATGGTTCAACAGTCTCATGCTGCTGAAATGCAGCAATCCGAGCCAACCTCGTCTCAAGCTCAACAGCAATCAGCCATTCAACCGCAGATTATGTTGTTGCAATATCAGCATACTCCGGCTACACATATCCAAATGTATCAACCGGCGGCGCCCAGTTGA
- Protein Sequence
- IPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALEAIRTGQTTVQKAATEYGIPTGTLYGRCKREKIELSRSNPTPWSQDAMSEALEAIRLGQMSINQASIHYNLPYSSLYGRFRRGKYEADHLDHEDDDNTGVVVDVQPGGSQQQQQQMVQQSHAAEMQQSEPTSSQAQQQSAIQPQIMLLQYQHTPATHIQMYQPAAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -