Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028274.1:3021299-3023182[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.7 3e+02 2.8 0.2 1 19 298 316 298 321 0.91

2 7 0.058 4.8 8.5 1.6 2 23 396 417 395 417 0.94

3 7 3.2e-06 0.00027 21.9 1.9 1 23 464 486 464 486 0.98

4 7 0.0067 0.56 11.4 2.7 1 23 492 514 492 514 0.99

5 7 5.6e-05 0.0047 18.0 1.9 1 23 520 542 520 542 0.99

6 7 0.0094 0.79 11.0 2.5 2 23 548 570 547 570 0.95

7 7 0.00022 0.019 16.1 0.1 3 23 578 599 576 599 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.7	3e+02	2.8	0.2	1	19	298	316	298	321	0.91
2	7	0.058	4.8	8.5	1.6	2	23	396	417	395	417	0.94
3	7	3.2e-06	0.00027	21.9	1.9	1	23	464	486	464	486	0.98
4	7	0.0067	0.56	11.4	2.7	1	23	492	514	492	514	0.99
5	7	5.6e-05	0.0047	18.0	1.9	1	23	520	542	520	542	0.99
6	7	0.0094	0.79	11.0	2.5	2	23	548	570	547	570	0.95
7	7	0.00022	0.019	16.1	0.1	3	23	578	599	576	599	0.95

Sequence Information

Coding Sequence: atgtttatgaaaaaaacaGATGCCTCTATTGACCGGTTAAACTCTTCTACTCTAAGTAAGTGCAGGATATGTTTGAAACAAGgagaaatttatatatttagtaCCGAAAACCTATTGGAACAGATTGCGGAGTTCGGGTCTTTGACGATAACCGAAGATGATCCATATCCTAAATATATTTGTGAACCCTGTCATTTACTACTCAAAGCAGCATTGCTATTTCGTCGAAAAGCGAAAAAAACGGAGAAAAAACTTTATTCCAAACAGctagatgtaaataaaattcctCACAAGCCTGAGAATTCAAACATTGAACTCACCAAAGAATATCTTTCAAAAAAAGAACCGTCACCATTTTCTGATACATCTGAAGCACTGggtttcaaagaaataatacaaACCATACCAAAGTGTGCATTTACTGAGAAAACACAATCAGGTGTCAATTCTGATgatgaaaaattaaatcttGATGTGTCAAATAAAGAAGATACTGCTAGTGATTCTTCTGGTTCAGAAAGAGTTTACTTAGATGTTAATTATGATTTTGATGATAATATTcaacaaatagaaaaactgcAACAATTATTGGAACCATCTTTTAAGGAGGATTGTAGGAAAACGTCTCAGAAAATTACCAATGGATACATTAAACCACCTGAACTAAATATAAGAAACACAGCTACTACCAAAAATATTGAAGATgttgtaaaattacaaaattctgaaccaaatataaaattaaatcaaaatgtgGAAAATAATTTGCAAAATCAATTAGATATCATTATTAACCGTTATGCTAAACCCTTGaaatgtaacttaaaaaaaatcatttcaaataaAGAACTCCCAAGAATTAATTCTGAAGATAATACTTTAAAATCAGGTTACAACTGTGGAGTATGTAATGAAATTATTGAAAACATAGTTGAACTGGAAAAGCATTGTGAGCttcaacataatataaaaataacagataaaataaaatgtgatgTTTGTTTCAAGGATGTCACTATAGCAACTCAAGATATACACATGGAACAACATAAAATAGATTATGAAAACcaggaaagaaaagaaaaagttGAATGTAAAGTTTGCAAAAAACTCatcataaaaacctatattaATTATCACATGAAAATGCACGGTACTAAAACAGAACAAGATCAAAGGAAAAAGACTTGTGAGATATGCAAGAAGTCAGTATCAACACGTTATTTTAACAGTCATTTAAGAAAGATACATAAATTGAATCTAATTGGTGAAAAATCAGACAGTTGTAATAATGAGGTTGTTTATCAAAGTTGTTATGTGTGCCAAAAGCAGGTGCATAAATCAAGATATAAAGATCATCTAGCTGGCCATGGAAACGTTCCGGAGTCTTATGTCTGTGAACACTGTGCTAAAGTCTTTACAAATCGTGCATCTTTCAAAAGGCACCAGTTAATACACTCTgaagattttaaatataaatgtcaGTTTTGTCCGTACAGATGTCAATATTTAGGCCTGCTCCAAGTCCATGTAAAAACTCACAAAGGTGAGTATAATTACAAATGTCCAAAATGTTCAGCGAAATTTCTAACGAAAAGTAACCTTAATCAGCATCTTCAAAGACATGGTCAAGGACACATTAAATGTTACGAGtgcaatttatattttttccgtAAGAATAATATGGAGAAGCATTATTTTACAAGCCACGTAGGACTTCGTGATGTCATATGTGATGAATGTGGAAAGGGTTTCGGTCATAGAGATGAATTGCTGGGTCATCAACTGAGGGTCCATAATAGAGAGAGATTAATGAAACGCGTTCCAAACTATTTGAAAGCAGCCAGGGAAAAAGAAAAAACTGAGACTGACCagcatttttaa
Protein Sequence: MFMKKTDASIDRLNSSTLSKCRICLKQGEIYIFSTENLLEQIAEFGSLTITEDDPYPKYICEPCHLLLKAALLFRRKAKKTEKKLYSKQLDVNKIPHKPENSNIELTKEYLSKKEPSPFSDTSEALGFKEIIQTIPKCAFTEKTQSGVNSDDEKLNLDVSNKEDTASDSSGSERVYLDVNYDFDDNIQQIEKLQQLLEPSFKEDCRKTSQKITNGYIKPPELNIRNTATTKNIEDVVKLQNSEPNIKLNQNVENNLQNQLDIIINRYAKPLKCNLKKIISNKELPRINSEDNTLKSGYNCGVCNEIIENIVELEKHCELQHNIKITDKIKCDVCFKDVTIATQDIHMEQHKIDYENQERKEKVECKVCKKLIIKTYINYHMKMHGTKTEQDQRKKTCEICKKSVSTRYFNSHLRKIHKLNLIGEKSDSCNNEVVYQSCYVCQKQVHKSRYKDHLAGHGNVPESYVCEHCAKVFTNRASFKRHQLIHSEDFKYKCQFCPYRCQYLGLLQVHVKTHKGEYNYKCPKCSAKFLTKSNLNQHLQRHGQGHIKCYECNLYFFRKNNMEKHYFTSHVGLRDVICDECGKGFGHRDELLGHQLRVHNRERLMKRVPNYLKAAREKEKTETDQHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -