Tvar004635.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028261.1:1343680-1351110[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.22 18 6.7 0.2 2 21 1437 1456 1436 1457 0.88 2 7 5.3e-05 0.0044 18.0 1.6 2 23 1566 1587 1565 1587 0.95 3 7 0.0085 0.71 11.1 3.2 3 23 1608 1628 1606 1628 0.97 4 7 0.005 0.42 11.8 4.2 1 23 1665 1687 1665 1687 0.98 5 7 0.0055 0.46 11.7 5.1 2 23 1713 1734 1713 1734 0.95 6 7 0.019 1.6 10.0 0.5 1 20 1758 1777 1758 1779 0.94 7 7 0.55 46 5.4 0.8 5 23 2119 2138 2116 2138 0.90
Sequence Information
- Coding Sequence
- ATGGATAGACTGAATCAGTTGCGAGGTGCCGCGGGGAGTTCTGGGGACTCCACGCTAGACACCACATCGCCGCCGAGCGAGGCCTACATGACGGCCAACGACAACTCCAAATACTTCTCCCTCTCAGAAGTAGATTCCACTTTCGACATCGCTCACATGAAAGAAGTGCCTTTGACGACTACGAAGACAGACACAGCGATCACCAGCACCGACGTGATTATACCGAACCTGTCTCCAATTCATAAAAAGAATGATCATGAAACATACAACATTGGTAAACAGATTGAGGCCGCTAACATTTTGTCTGGTGGAGTTCAGATATTTGATGATAATGACAATTCTTATGACGGGGACGAGTTGGTCATTGATGACAATGTCGAACAAGATGAAAAATCCGATGCTAAAACTATAGAAGAGTATAAGTCGGGTGAAAATTTGACAGAAACGGCAACTTTAGTTCAAGAGGAACCTGGTAAAGATACTGAGGTAGTGTTACAGATTGACGGTAAGAATGTTGATGCAATCGATATCGGGAATGGACTGTACTTGTATCGGAAGGAGGGAGAGGAGGAGTTAGCCGCAGTTCAGATCATTGATGATAACCAGCAGCAACCTAGTTTTAAATTCCTTAAAGTTCGtgaGAATGCAGAAGGAAATCTAGAAGTTTATGAAGAATTTGAGATAGAAGTACCTAAAGAAGTGcctagtAAAGATGGAAAATCAAGTCAAAAGAACACAACCCACATGCCTATTAAtcaagatataaataaaatcataaatgaTTCGACAAGCAACAAAGTTGCAGAAAAGATAACACCAGCAAAGGAAATTCCTGCAACAGCTACATTCCACGATGTAAACACAGAAAACAAACAAACGGACAAACCAGAATTAAACTTGAATGGGAAAATGATGAAATTCAATGAAACTAGGAAATCTCCAGTTGTAGGCAGTTTCATGCCAATGACACATTCTACTCCTAACAAAGAGGGAATTCCATTAACTAAGACCATGGTAGACCAACAGCTGCATCCGAGCAGACATTCTGATAACGTCAAGAAAACAATAGAAGTACACACAGAAAATTGCAAGAAGTTAGTAGAAACTCCAACGAAAAATAAAGAAGTTGAAGATGTTTCTAATGAACCTAATGAAAGTCTCAATACTGATGTCAAAGATGATAATCATGATAATGAAGAAAAAATAGAACCAAAGATAACACTAAGTGAAAATGAAGTTAGCAATTTAACAAATGAAGATAAGACAAAAACAATTGAAGATAAAAATGTGGAAGtagttaaaattaatgaaacaaaTGAAGAAAAATCTAAAGTAAGTGAAAACCCAAAAGCAGAATTAGCTAAAGAACAAATATCCTCAACAAGTACAGAAAAAGAGACCATCAAACCATTAACTATTGTTGATAATATAGAAAAGACAGAAAAATTAGTTCTACAACCTGCTGATACAATACCAGCCAAAGAAATTGAAGTGAAGGAAAATGAGAAAATCAGTTTAATACCTGCTACAACACAATCCAAAGCTGATGAAATAAAAGAAGAGGAAAAAATCAACATAACAGAAGAAGTCCAAGATATTAAAAACACAGAAGAAAAACCAAAGAAAAGTGAAGATATAAAACCCATAAAAGAAGTTTCGAAATCTTCAGAAGATGTTTCAACAGAACTTCCAAATACAGTTAATAAAAGTGAGGAAAAAACACAAGTAACAAAAGATAATAAAGATGAAATTATTGCACcaattaatgaaataactgACAAGAAAATTGATATAAATGTATCACTAGCAGACAGTAGTAAAACTTATGAATCATTAAATGTTTCAGAAGATAATTCTAAAATTGCTGATAGTGGTGATAGTGATAGTGTCAGTGGTGCTAAATCAGAGGTTGCTAAAGATAATGAAGGCCTTAATTTATCAAAAGAAAGTAATGATAAAACAGAAGATgtgaagaaattaaataatgaagAAGAAGTTCTAGATTTAAAATCAACTGAAACTGctactaaatgtgaaaaaataattgttgatTCTGAAAAACCAAAAGAAGAAGAGTCTAAATCAGAACAAAGCGTAGTTGTAGATAGTACGAAAGAATGCAAAGATGATAAAATAGATGAGATTAAGGACTGTAAGGAAGTCCCAAAAGATAAAGACAATATTACGGAAACACTCAATACTGTACAAAAATCTGAAGACGATGCGAAAGATAAGggtaaagatttaaaaattgaaGATAAACCAATTAACAATAACAACAGTGCAGTTCCTTTTGGCAAATGGACAGAAGCCAACAGACAAGCATttcttaacaaaataaaagaaaccaAAACACCAGTCTATAATAACAGCAGTAAATCAATCAAGAACTCGAACGATTTGAATAAAAGAGACGTTCTCAAGAAAATCGATAGCCAGAGACAAACAACCAATGCCAATACCAAAAATGTTGAATTGAACAAACCTGTagttaaaaatgaaacattGTTCATCAGCAAAACTACAATTGCTAAACAAGAGAGCAAAACGTGTCCAACAAACTCTTGCAAAATTCCTGTTAAATCAGTTACATCTGAACCAGTGTCTAAGAAAATAACGGTAAAGAAAATAAGTAAACCAGAATCACAAACTAAAGCTGAAGTTCCTTCCAAAAAACCTGCACCACTTGTTCTAAAAAGTGTCCCAAAAGAAACCTCATCAAGAAAAGTCAACGCACAAGATTTGATAGACAAAACTATTGAAGAGATGATCAATAGGACGTATCCAAAGAGAACTTCTACAGAAGACAATAGAACAAGTACAATTACTAGTAAAGATCAGGAAGAACTGGATTGTACTGTAGCAGATGCGATAGCATACAATCAGGACAAATTCGATGCTATCGAGTTGAAAATGAGTGAATTACATGGAATGAAATTaactgaaaaacaaaaagaacaacCGCAAAATATATCCCCAAAACTGAATTTAACTGACAAAAGTGAGAACAAAAAACCTAGTGATGAAGAATGTGAAGTGCCAAATTTAACCACAACAGCTTCATTGAGAGAAACCTTGGAATTAGATTCTGAGGAAGAAATCATTGAACATGAACCAGTAACTGGTGATATTGAAACAACTAAAACTGAGTCTCCACAACCAATAGTTAAAAAAGATGAAGTCCAAGGTCAAAAATCTAAACAAGAAGCAAACAAAGCAGCTATTATAACAGAGAAAGATTTTGATAAGTTTGTTAGGAGAAATTCAGTGACTTATGAAAACCATTTGACTGTAAGTGTGCCTGAAACACAGGCGGTACCAGCAAATTACTCGAATAAAACAAGCCAAATACCACTTAAACTATCtgctaaaatacaaaattacaaacACAACCCATCAAACAAAGTTACTATATTATCGAACATACCAATCAATGAAGATTCATCcaacaaaaactatcagtcaaaGCTGCAGTTAGCTTATCAAAATGCTTTGACAGTTAAAAGAAAAATGGAGGGACCTATTACAATTATTGAAGATAAACCAGTAAAAGTCGTTTTTATGGATGCAAATTCCGAATTTACACCTTCTCAGTTAAATGTTCAGGGTAAAGACTTATCGCCTTCTAAAATGACAGGAGACAATGATAACTCAACGATTAGTTCTTCTGACTCGTTTGATTTTGATGTCGTAGATGCATCAGAAACAAAAACACAAGATGAAtctaaaaataagataaaacatcAAAGAAAGCAAGTGTTGACTCCAGTTGAGGAGCCAGAATTTGAATTAATCCGACCAACTGATTTAGGAATAGATGTTTCGTCAAAAAAGAAACGTCGTGTTGAGGAAACGAAACAAGAGAAAACAAGCACAAAGAATTTAATTCACAAGAAATCATACCTTCTTGGTCGAAGTGTTAATAGAGAAGAAAAAGTAAATGGACAGAATGTATCTAAAGACACTGTGAACAAGGAAGTggaatttacaaacaaaactaCTGTATCTGCAATCGATAACTTGGTCAAAGCTGCAGAGTTGCTAGAAAACCAATTGGAAGACAAAGAAAGTAAAGTTTCGAACAATGATAGTCCTCAGCAAACACCCACAAAGAGAGGAAGAGGTCGTCCTAGGAAATATCCGTTATCAGATGGAAGCCCGGAAAAGCCAAAAACACCAAGCCCTCAGAAAAAGCCACGTCTTATTGATGCGAAACCAGTTAAACACGACACAACAACAGAAGAAGATACTTCAGATGATGAGATAGTTAAAGAAAATTGGACAATGGgcaaaattaatgaaaacattGTTTGTCCGATTTGTAATAAACTCTTTAGGACTGAGAATGTTGTTTTCAAACATGTTAAACATTGCACAGGCCCTTCACCGAATAGATCTGACGCAGGTAAAAGAAGATCACGAAGAATGAGGGACTCTCAGGACTCTGATTCTAAGTCATTTGACAGTCAATCCGACCTGGTTGATGACGATGAGGATGATGACGACATCAAAATCAGTGAAATCAAGAAAACCATTCCTAAAAAGCGCAAATCAGTCGATAACAAAATTGAAGCTGAAAAGGATGATGTCATTGTTATAGAAGACACTCCAATAAAAGAAAAACCCAAAGAAGATAATAGAAAACATCATGAGTCAAGGAAAGAAACTAGAAACACATCAAGCAACAAATCCCTAGAATGTGAACATTGTGGCAAAACTTTCAGGCAACTTTCGTATTTGGATAGTCATAGACTACTCCATAGGAAACAGGGTGAAAAGAAAATAGAAACTGTGCAAAGCACTGAAAAATCTGTTTTTGGTTGCGAAGTGTGTAAGAAAGAATTTAGAAAACTCCATCATTTAGTCCAACATAGAATAATTCATAATTCGAATACAAATACTAAAGCAAGTAGGAAGACGTCCTCTGAACAAAATGAGATCAAAAACGAAACAGAAGAGGTTACAAAACAAAGCGAAGACACAAGTGCTGGCTTCCGGTGTGAACCCTGCGATAAATCATttaggaaactacatcacttaGTTGAGCACCGAGAGACACACGATGGCATAAATAGACAGAAAACGACTGCAACAAATCCACCCTCAAATGTCATTGAAAAGTCGCCCCCGCCGCCTCAGTGTGAAATATGTAAGAAAACTTTCAGAAAATTACATCATTTGATAGAACATAAGGAACAGCACAACGAAACAAACTCTGAAAAATCTGATGATAAGAGTGTACAGAGTTCATTGTCTACTAAAGATATTATACACGAATGCTCACTTTGCTATATGGTCTTCCCCAATGAGCATTCATTGAATAAACATACTGTCATTTGTCAACGAAAAAAGAAGTCGAAACTGGCAAAACCTGCAACAGGTGATGCGAATGACGTCACGGAAAATACGGACCACGTTCCAACTGAATCAAGTGTTGATGATGACGACGATGATGAACCCAAAATAGTTGCAGAAGAAATCAAAATAATAGATTTAGAGAAAGACGATGTTGAGGACAACGTGATCTGTCTTCAACCTACTAAAGAAATGGATAAAAACGAGCGTGCGACCAGCGAAAGTCTTCCAGAAAGCGATAAAAGTAAAGTGAAAGAGATTGGTGCTATTGTTAAACAAAGTGATGTACCAGTAATCGCCAAATCTGAACCAGTACTTCCGAAAGACGCTCCAAAGTTAAAGAAGAGTGAAGAAAAAGAAATTCCAATAGCCGAAATCAAAACGAAGGTTGCTCCAAAGGAAAAGGTTGAAGCTCCAGTCATTAGAAaacaaaaagttacaaaatctGCTGAACCCGTTGCACAGGAGATCAAACCTAAACCTGCTATAGAGAGTAGCGACGACGAAGAAATTAGATACATGTTGAACCCCGATTACAAAGTAGAAACTCCAGGAAAAATGTTCATGAAAGTGCGCGCGAATAAACGTAGTTCCTTGCAAATTGAAAGACCTGATTCGAAAGAGTTAGTCAAACGGAGAACATCTCTGCAGCATCCTCCTAAAATTCCTCGTTTGAAACCCAAACCAGTCGACGTAAAGCctattacaaacataaaaaggaGGATTACTAAAATCCCTGAGGTTCTCCCGGCGACCGATTCTGACGATAGTGACGTTAAATATTCGTTCCCGACCGCTGAAAATACCGTGAAAGCTGAACAAGAACCTGCTAAGAAAATAAGTAAACCCCAAAGAAAATCAATCACAGAGAAAAGGAAAACTTTGAGTTCTATTGCGAAGAGAAAATCTCTAGGAAAGGCAGCAATAACGACGCACAAACCAAGTCCCTTGCCTGTTAAACAATTCAAAAAGAGGATTACGGAAGTTGAGCATCGGTGTGATTGTGGTCAGTTGTTCAGTAGTGCTGCTCTATTGTCGCGACACACCACATTGGCGCACACTCCGCCTCGAATACGCAAACGGCGCTCTCCCCCGCCTGAAGCAGACACCAAACCTATCAAACAAACTCGCAAATCCATCGAAAAACTGAAACCGGTCCAACCGGCTCGGAAGTCGAGCGCCCGAAGCGACGCCAGCGCTTCAAGCAAACCTATCCCTACCAGGAAAACCAGTGTCAAAGTCGAAACTAAACCCACAGAAGTCCGCAAATCGATAAAATCCGAATCTTCCAAACCGACCGTGGTTAAGGCGAAAAGGGCCGCCGCACACAGAGGCGTCCCGGTCCCGGAGAAAATGAGGAAACTGTTTCAAAAATCGAAATCATAA
- Protein Sequence
- MDRLNQLRGAAGSSGDSTLDTTSPPSEAYMTANDNSKYFSLSEVDSTFDIAHMKEVPLTTTKTDTAITSTDVIIPNLSPIHKKNDHETYNIGKQIEAANILSGGVQIFDDNDNSYDGDELVIDDNVEQDEKSDAKTIEEYKSGENLTETATLVQEEPGKDTEVVLQIDGKNVDAIDIGNGLYLYRKEGEEELAAVQIIDDNQQQPSFKFLKVRENAEGNLEVYEEFEIEVPKEVPSKDGKSSQKNTTHMPINQDINKIINDSTSNKVAEKITPAKEIPATATFHDVNTENKQTDKPELNLNGKMMKFNETRKSPVVGSFMPMTHSTPNKEGIPLTKTMVDQQLHPSRHSDNVKKTIEVHTENCKKLVETPTKNKEVEDVSNEPNESLNTDVKDDNHDNEEKIEPKITLSENEVSNLTNEDKTKTIEDKNVEVVKINETNEEKSKVSENPKAELAKEQISSTSTEKETIKPLTIVDNIEKTEKLVLQPADTIPAKEIEVKENEKISLIPATTQSKADEIKEEEKINITEEVQDIKNTEEKPKKSEDIKPIKEVSKSSEDVSTELPNTVNKSEEKTQVTKDNKDEIIAPINEITDKKIDINVSLADSSKTYESLNVSEDNSKIADSGDSDSVSGAKSEVAKDNEGLNLSKESNDKTEDVKKLNNEEEVLDLKSTETATKCEKIIVDSEKPKEEESKSEQSVVVDSTKECKDDKIDEIKDCKEVPKDKDNITETLNTVQKSEDDAKDKGKDLKIEDKPINNNNSAVPFGKWTEANRQAFLNKIKETKTPVYNNSSKSIKNSNDLNKRDVLKKIDSQRQTTNANTKNVELNKPVVKNETLFISKTTIAKQESKTCPTNSCKIPVKSVTSEPVSKKITVKKISKPESQTKAEVPSKKPAPLVLKSVPKETSSRKVNAQDLIDKTIEEMINRTYPKRTSTEDNRTSTITSKDQEELDCTVADAIAYNQDKFDAIELKMSELHGMKLTEKQKEQPQNISPKLNLTDKSENKKPSDEECEVPNLTTTASLRETLELDSEEEIIEHEPVTGDIETTKTESPQPIVKKDEVQGQKSKQEANKAAIITEKDFDKFVRRNSVTYENHLTVSVPETQAVPANYSNKTSQIPLKLSAKIQNYKHNPSNKVTILSNIPINEDSSNKNYQSKLQLAYQNALTVKRKMEGPITIIEDKPVKVVFMDANSEFTPSQLNVQGKDLSPSKMTGDNDNSTISSSDSFDFDVVDASETKTQDESKNKIKHQRKQVLTPVEEPEFELIRPTDLGIDVSSKKKRRVEETKQEKTSTKNLIHKKSYLLGRSVNREEKVNGQNVSKDTVNKEVEFTNKTTVSAIDNLVKAAELLENQLEDKESKVSNNDSPQQTPTKRGRGRPRKYPLSDGSPEKPKTPSPQKKPRLIDAKPVKHDTTTEEDTSDDEIVKENWTMGKINENIVCPICNKLFRTENVVFKHVKHCTGPSPNRSDAGKRRSRRMRDSQDSDSKSFDSQSDLVDDDEDDDDIKISEIKKTIPKKRKSVDNKIEAEKDDVIVIEDTPIKEKPKEDNRKHHESRKETRNTSSNKSLECEHCGKTFRQLSYLDSHRLLHRKQGEKKIETVQSTEKSVFGCEVCKKEFRKLHHLVQHRIIHNSNTNTKASRKTSSEQNEIKNETEEVTKQSEDTSAGFRCEPCDKSFRKLHHLVEHRETHDGINRQKTTATNPPSNVIEKSPPPPQCEICKKTFRKLHHLIEHKEQHNETNSEKSDDKSVQSSLSTKDIIHECSLCYMVFPNEHSLNKHTVICQRKKKSKLAKPATGDANDVTENTDHVPTESSVDDDDDDEPKIVAEEIKIIDLEKDDVEDNVICLQPTKEMDKNERATSESLPESDKSKVKEIGAIVKQSDVPVIAKSEPVLPKDAPKLKKSEEKEIPIAEIKTKVAPKEKVEAPVIRKQKVTKSAEPVAQEIKPKPAIESSDDEEIRYMLNPDYKVETPGKMFMKVRANKRSSLQIERPDSKELVKRRTSLQHPPKIPRLKPKPVDVKPITNIKRRITKIPEVLPATDSDDSDVKYSFPTAENTVKAEQEPAKKISKPQRKSITEKRKTLSSIAKRKSLGKAAITTHKPSPLPVKQFKKRITEVEHRCDCGQLFSSAALLSRHTTLAHTPPRIRKRRSPPPEADTKPIKQTRKSIEKLKPVQPARKSSARSDASASSKPIPTRKTSVKVETKPTEVRKSIKSESSKPTVVKAKRAAAHRGVPVPEKMRKLFQKSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -