Tvar015786.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028274.1:4047306-4053036[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.058 4.9 8.5 3.3 3 23 251 271 249 271 0.96 2 12 0.02 1.7 9.9 3.4 1 23 279 302 279 302 0.93 3 12 1.5 1.2e+02 4.0 1.7 1 23 306 334 306 334 0.69 4 12 0.00021 0.017 16.2 2.0 1 23 408 430 408 430 0.99 5 12 2.2 1.8e+02 3.5 5.1 1 20 438 457 438 461 0.95 6 12 0.52 43 5.5 3.9 1 23 465 487 465 487 0.98 7 12 0.00023 0.019 16.1 1.7 1 23 492 515 492 515 0.97 8 12 1.9 1.6e+02 3.7 1.5 3 23 521 542 520 542 0.81 9 12 3.3 2.7e+02 3.0 0.7 1 23 629 652 629 652 0.78 10 12 3e-06 0.00025 21.9 1.3 1 23 661 683 661 683 0.98 11 12 3.1e-05 0.0026 18.8 0.2 1 23 689 711 689 711 0.98 12 12 3.3e-05 0.0027 18.7 4.6 1 23 717 740 717 740 0.98
Sequence Information
- Coding Sequence
- atgttaGATTTAAAGGCGTGCTTCGTGTGTTTTAATGTTGAAACTAAATTAGTCAATTTAGATCGAGAGAAAGTTagggatatttttaatttagtttccgGCCTCCAGACAAAGCCGGGCGAAGGCCTACCTGAATATTTATGTGTTTACTGTTTGGCGTATGTCAAACGCTCATTCAGATTCAGAGAAAAATGCAAGAGAGCTCATTTCGCCTTACAAGAAATACTGCAAAGATGTGACGAGATCAAAAAATGTCACCTAAAGGCATTCAATGGGAAACGTTATGGTATCGGTCCACAGCTATCGTATGTGAACCTAGAGAAAACACATTACGAACAAACAGAGTTTCAGTGGGTGAAGCACAATCGAATCATCACTACTACTGGAGACATCATACCGGTAGCTCATTGCAGTACACTGCCTAGCGAAGGCATGTTCCTTGATGTTGAAgtcaaaaacaatgaaaaaacgGAAGCAGTGAAAACAGAAATTGTTGACGATGAATTCGCAAACAACTTCACAAAAGATGAAACCTACAATGATACAAATTTGGATGCTGCAGATTTTTACGATGACATTCAGAATGATAGTGATGCCCAGGAACTATTTCCGGTCATGTCTTGTGATATAAAGAAGGACGAATGTGAGAAAACTGATGAAGATTTCGCAGATATTTATCCCATATCAATGAACGAAGCAAAGGCAGCAGCTGAGATAACAAGACTGTACACAAGTAACGGGAAACATTTATGTTCTGTTTGCGGTAAGAGGCACAGTAGTGAAGAACGTCTAAAGATACATTTAAGAATGCATGACAAGCTCATTAGTGGCAATTACCATTGTTCAATAtgtgattattattataaaactgagTTTCTTCTACAAACTCACACATCTGAAAAACACATGTACAAATATGTTTGTACTAAATGCAAAGAAGTTAACTTTGATAAATCATCAGCTAAACAGCATTTCATGTGGACACACATGCAAAAAGGACACAAAAAGAGTGAAACCTGGTACAAAAACAAACCGTCATGGCTTAGCTCTAGAGAAGGCAAAAGAACCAAAGGCTCCAAGAATATAAAAACCTCTGTAAATCCAAGCAAGAAATATGCAAAATTACCTGAAGATTTCTTAACATACTCCCCAATAAGTCATTTAGAACAATATCAGTTAGTTCTAGACAGAAAGAAGACTAGTAACTATTTGGACTCTGTTTTTAAATGTGAATTGTGTTATAGAGGCTTTAGAGAACCAAATACGTATGAGAAACACATGAAGAAACATGATCCAgtgACATCAGGAAATTTCCAGTGTGATATGTGTAAATTATACTTTTTGACGCAAAGGAAACTATATAAACACATGAGTTGCACACATCTCTTCAAGTATTCATGTCGTTTGTGCACTTATGTGTGTGTTAACAGAGGTCAAGCACATTCACACTACAGATGGCATAAAAACGTGACATATCCATGTCCTCActgtgataaaatatttaaGAAAGTTTCAACGCAACTAACTCATATAAGACTGAAACATCCTTCTAATAATATCTGTAATCTGTGCGGTCACAGTTTCGTTGGTGAAAATGGTCTGTTCTGTCATAAACAGATTGCACATACTGTTGAGGAGAGAGAGCTAAGTCAGTCTGTGTGTAAGAATCCATCGGATCCATTATACTGTGCGGCGTGCGCCATACAGTTCCTAAACGAAGAAGCGTTCACTACTCATCTCGGGAGCTCTAACAAACACGCTACTGTCAATGAGTCCATACTAATGAAGCGCAAGCCGGGCGCGGGGCGTCGCACGGGGCGCGGGCGGCCCGGCAGACATCACGCGCTGTCCTCGCACATCGTCAATAACGGACTCACCACCTCGCACAACTGTGAAGTCTGCGGTAAATTCCTACTAAACGACGTGCAAGCTCGCAAACATTACGAGACGGAACATCCCGGCACCGAGTTCCTCAAACGATACATGTGTGATGTGTGCGGACATACTACTAAGCAATACGCGAATCTGATGGTTCATATGCGGACCCACACCAATGAGAAGCCGTACGAGTGTCCGCAGTGCGACAGGAGGTTCAGTATGCCCAGTAATAGAGACAGACATATAGCTGTGCACACAGGCGAAAAGAGATACCAATGTCATCACTGCAACCGTCGTTTCACACAAAGCAACGCGGTCAAACTACACATACAAACTGTTCATCTTAAAATACCTTACGCTCCCTGGGACAAGAAGAACAGGAAACGAAGGAAAGAAACCGAATCTAATCCAACAACAATGAATGCTCTAACAACTAGCAACGTGATGTGTCTGCAACAACAACATAAGGTGTTGTTAGAAGCGCAAGGGGATTATCTCAACGCTTATATTACGTATAATGATGTCTGA
- Protein Sequence
- MLDLKACFVCFNVETKLVNLDREKVRDIFNLVSGLQTKPGEGLPEYLCVYCLAYVKRSFRFREKCKRAHFALQEILQRCDEIKKCHLKAFNGKRYGIGPQLSYVNLEKTHYEQTEFQWVKHNRIITTTGDIIPVAHCSTLPSEGMFLDVEVKNNEKTEAVKTEIVDDEFANNFTKDETYNDTNLDAADFYDDIQNDSDAQELFPVMSCDIKKDECEKTDEDFADIYPISMNEAKAAAEITRLYTSNGKHLCSVCGKRHSSEERLKIHLRMHDKLISGNYHCSICDYYYKTEFLLQTHTSEKHMYKYVCTKCKEVNFDKSSAKQHFMWTHMQKGHKKSETWYKNKPSWLSSREGKRTKGSKNIKTSVNPSKKYAKLPEDFLTYSPISHLEQYQLVLDRKKTSNYLDSVFKCELCYRGFREPNTYEKHMKKHDPVTSGNFQCDMCKLYFLTQRKLYKHMSCTHLFKYSCRLCTYVCVNRGQAHSHYRWHKNVTYPCPHCDKIFKKVSTQLTHIRLKHPSNNICNLCGHSFVGENGLFCHKQIAHTVEERELSQSVCKNPSDPLYCAACAIQFLNEEAFTTHLGSSNKHATVNESILMKRKPGAGRRTGRGRPGRHHALSSHIVNNGLTTSHNCEVCGKFLLNDVQARKHYETEHPGTEFLKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYECPQCDRRFSMPSNRDRHIAVHTGEKRYQCHHCNRRFTQSNAVKLHIQTVHLKIPYAPWDKKNRKRRKETESNPTTMNALTTSNVMCLQQQHKVLLEAQGDYLNAYITYNDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -