Tvar013911.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028271.1:8481447-8489076[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.54 45 5.4 2.0 1 23 267 290 267 290 0.94 2 9 0.016 1.3 10.2 4.3 2 23 298 319 297 319 0.97 3 9 0.067 5.6 8.3 0.9 1 19 323 341 323 342 0.95 4 9 0.00018 0.015 16.4 4.2 2 23 351 372 351 372 0.98 5 9 2.2e-05 0.0019 19.2 0.8 1 23 376 399 376 399 0.97 6 9 0.088 7.3 7.9 0.6 2 20 415 433 414 435 0.93 7 9 0.00024 0.02 16.0 1.1 2 23 466 488 465 488 0.93 8 9 5.7e-05 0.0047 17.9 1.1 1 23 537 559 537 559 0.99 9 9 7.6e-05 0.0063 17.5 0.4 2 23 566 588 565 588 0.97
Sequence Information
- Coding Sequence
- ATGTCTGATTTAAAAGTATGCAGGATTTGTCTCAATACAGAAGTGAAATTACATGAattcaataaatataaactaaaagaATGCTACGAGCAGATAATGTCGATCAAGcTTAAGGACAACGACGGACTACCAAGATACTTCTGCTATGAATGTGCCACCTTGATTCACAAGTTTTATAAGTTCAAAAAGAAATGTGAAATTGGACAGAAAGAACTGAAACAGCTAATTGGAAAAGGCAGAGTAACATtgcaaaaaataacacaaatagaTAGAACAGCCAAACATTTGACAACAGCACTAGACATCATCACTGTAACAAACCGTGTCAACACTTACTTTGCAAGGCACCGGAAGATTCTCAGACAAAAATCAATGAGTCCACCGCCCATACCCATAATTGTTCCAGAAATGATAGATGTTGACAAAACTGAAATTGAACCTATTAAAATTGACACTGACAGTATTACAGAGAAGACTGAAAACTTAGTACATAAGCAAGAATCTCTATACATTAACAATTTAGATGACAATATGGAGCATTTAACGGAAGACGATATATCTTTGTATGAATTGAAACAAGATAAGGCAAtagattttcttaaaaataaaaggaGAACGAAAAAAATGAATAAGAAGCAACTGAAGAGTCGAAAGAAGCACAAGTACCCTGAGATAAAAGTGGAAAGAAAAAAACGTAGACTGAATGAAGACAACTGGCAGTTATGTCATATGACAGAGGAAGCAGCAATGGAGGAGTTTCAGGCAAGAGCTAATGATCCAAAGTATATAAGTGCAGTTTACAAATGCACTTCATGTATAAAAGGATTTTCAAAGGATGACATGATGAAGAGACATAATAAATTGAGGCATAGTGAGTCAAATGGTCCAATAGAGTGTCACTTCTGTCGCATCCGTTTCAAATGGAAGTCCCTTCTTCATAGACACATTCGGGAACACTACAACAAATATAGATGCTTGCGGTGTGATCTCACGTTTTCTAGAGAgacTTCCGCACAACATCATGATGAATTCCACAATGGTGTGACAAGGACTTGTGAATATTGCAACGAAACATTCAAacatttatCGACGTACTACACTCACCTCCGCAAGCACAGAAGCAAGCATGTGTGTCCCGTCTGTGGAGAGTCATTCGTCAGTCCTTTCGGTCTACATATGCATAGGAGGGTCAAACACATTATGGATACTgaCAAACAGGAAGACACATTAGAGGAAACGACTTACTGTGAGAAGTGCGATATAAAATTCGAGACAACTAAAGCCTATGAGGAACACCTGACCCATTCTGCTATGCATTTCGCGTCGGGTGAGTCTGCTCCTCCAATGAATCTGAAAGGAGGCTCTGTTGTAAGAAGAGCTCCGAGAAAACAAACACCATGTTCCATCTGCAACAAGATGTTTTCGACGTTGGTAGCGTACACAAAGCATCACCAAGCGTCCCATCCCGAGACTCCCCTCCCGGCGCTCGGAGCCAAGCATTGCGGCGCAGGACAGGGCCAGGAAAGACTCGTCTGCGAGATATGTGGGGCTTTGCTTGCCCCCAACAGCATGTACAGTCACCTGAACACACACACGCGCAAGAAACAATACACGTGCACCACGTGTGGGATGCAGTTCAACGCTCGGGGAACCTTGCAGAGACATTATTTGACGCATACAGGTGAAAAGCCTGTGGAATGTTCGTTGTGCGACAAACGATTCACGCAAGTGGCCAGTATGAAACTACACTACAGAACTATACATTTAAAACAACCATATCCTAAAAgAAACCGGAATAAAAAATCCGATGATTCGGATGAAAACGCCGTCATAGCAGAATATTATCAGAACAAAGAAACAGTTGAAGATGAAAGATGGAGAACCTTTCGCATGTAA
- Protein Sequence
- MSDLKVCRICLNTEVKLHEFNKYKLKECYEQIMSIKLKDNDGLPRYFCYECATLIHKFYKFKKKCEIGQKELKQLIGKGRVTLQKITQIDRTAKHLTTALDIITVTNRVNTYFARHRKILRQKSMSPPPIPIIVPEMIDVDKTEIEPIKIDTDSITEKTENLVHKQESLYINNLDDNMEHLTEDDISLYELKQDKAIDFLKNKRRTKKMNKKQLKSRKKHKYPEIKVERKKRRLNEDNWQLCHMTEEAAMEEFQARANDPKYISAVYKCTSCIKGFSKDDMMKRHNKLRHSESNGPIECHFCRIRFKWKSLLHRHIREHYNKYRCLRCDLTFSRETSAQHHDEFHNGVTRTCEYCNETFKHLSTYYTHLRKHRSKHVCPVCGESFVSPFGLHMHRRVKHIMDTDKQEDTLEETTYCEKCDIKFETTKAYEEHLTHSAMHFASGESAPPMNLKGGSVVRRAPRKQTPCSICNKMFSTLVAYTKHHQASHPETPLPALGAKHCGAGQGQERLVCEICGALLAPNSMYSHLNTHTRKKQYTCTTCGMQFNARGTLQRHYLTHTGEKPVECSLCDKRFTQVASMKLHYRTIHLKQPYPKRNRNKKSDDSDENAVIAEYYQNKETVEDERWRTFRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -