Tvar009552.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- Znf516
- Assembly
- GCA_030269945.2
- Location
- AP028267.1:2289313-2290779[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0023 0.19 12.9 2.7 2 23 160 182 159 182 0.96 2 10 0.61 51 5.3 4.6 2 21 188 207 187 208 0.92 3 10 0.15 12 7.2 4.7 1 23 230 252 230 252 0.96 4 10 0.00018 0.015 16.3 0.6 1 23 258 281 258 281 0.90 5 10 0.022 1.8 9.8 4.6 2 23 289 310 289 310 0.98 6 10 7.5e-05 0.0062 17.6 1.2 2 23 316 337 315 337 0.97 7 10 0.00025 0.021 15.9 0.5 3 23 345 366 344 366 0.96 8 10 3e-05 0.0025 18.8 0.9 1 23 373 395 373 395 0.98 9 10 0.059 4.9 8.5 0.2 2 23 401 422 400 422 0.96 10 10 6.4e-06 0.00054 20.9 3.8 1 23 427 450 427 450 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAAGATAAAAAGGACTCACTGATAGTGTGTCGAGTTTGTTTGAGATGCTTCTCGAATACAATGTGTATGTCATTATTTGTACTACAAAACGAACGCCTAATAGCCGACATGATTACTTCAATAGCCAAGGTAGAAATAAAGCAAGGTGATAATCTGCCTCAGCACATATGCAACGAGTGTTTCAACGATTTACAGAACGCTCTCACTTTCAAACAGAAGTGCGAATATTCCTACACGACTTTAACTAGTGGTATCTCGAAGAATACGTGCGCAAATCCTCTTCTCTTGTTAGTAAAAGAGGAACTACCTATTGAGAACGATTTTGATTACAGTCCAGGTAATGACAGTGACAGTGATTACAAAGATTATCAGAAACCTAAAATAAATGAGTTAGAAGGTAACAGTAACGATTTGAAACTTGAAATTAAAACGGAACCAACCAAAAAGAGCAAAGCCGTTAATCTAAATCTACAATGCAATGATTGCGGAGGTTTCTTCAAAACCAAATGCAAAATGAGAGTACACTGGAAAAAGGCTCACGAAAAGAGCTATCTGAAGTGTGAACGATGCAAGCGGCAGTTTAAATCTTTTAAGGCGTACCATACTCACAAGAAACGGAATCCGGCTAGTTGTGCTGCTTCCACATACATTCGAATAGAAGGTGAAGGAAGAAACCGCATGTTTCATTGCAAAGACTGTGATTACAAGTCACATAGAGTAAAAGACTTGATAACACATTATCTGCTCCACAGCGGTCATCGGCCACACAAATGCTCCGTATGCTCCCGGGGATTCACACAACTTAGCTCACTTTTCGCACACGAAGAGGGCATACACAAACTTTACAAAATGGAGGGAACGTGCCACGTCTGCGGTAAACAGTTAAAAGGTCGTAATAAGTTCTATAAACATTTAAAGAGACATGAAGAATCTGCTCAACAGTGCGAAATTtgcaaaaaagtttttaaaactaaGAAGATTTTAAGAGTACATATGGTCAGGCACTCTGATACTAAAACGGTAGCTTGTGAAATATGCGGTACAAGATACTACACTATGTCAGACTTATCTAACCATAGACGCAACACACATTTCAAAGTGGACAAAACATTTAAATGTGATTTATGCGGCTACGTTACTGTTCGGAATGAAACGTTGAAAAGGCACAAAGCAAAGCACACAGCCACAAACATTCCTTGCAAGTTTTGCGGTACATTTTTGGAAAACGAACAAGCATATCTCTTGCACATCAAAAGGCATCTCGACAAGAACTTTCCATGTCCCGATTGTGATAAACGATTTCACAAGAAACGGTACTTGACAGACCATATGAAAAGTAAACATGGAGGAGTAGAACTGGATTTGAAGGTTACTCCGaagaaagttaaaataaagcaaGAACTACCTGTAATAGTGCAATATAATGGTTTAGTTGAAATTTCACCTACAATAGAAGCATAG
- Protein Sequence
- MEEDKKDSLIVCRVCLRCFSNTMCMSLFVLQNERLIADMITSIAKVEIKQGDNLPQHICNECFNDLQNALTFKQKCEYSYTTLTSGISKNTCANPLLLLVKEELPIENDFDYSPGNDSDSDYKDYQKPKINELEGNSNDLKLEIKTEPTKKSKAVNLNLQCNDCGGFFKTKCKMRVHWKKAHEKSYLKCERCKRQFKSFKAYHTHKKRNPASCAASTYIRIEGEGRNRMFHCKDCDYKSHRVKDLITHYLLHSGHRPHKCSVCSRGFTQLSSLFAHEEGIHKLYKMEGTCHVCGKQLKGRNKFYKHLKRHEESAQQCEICKKVFKTKKILRVHMVRHSDTKTVACEICGTRYYTMSDLSNHRRNTHFKVDKTFKCDLCGYVTVRNETLKRHKAKHTATNIPCKFCGTFLENEQAYLLHIKRHLDKNFPCPDCDKRFHKKRYLTDHMKSKHGGVELDLKVTPKKVKIKQELPVIVQYNGLVEISPTIEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -