Tvar010548.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028268.1:1295387-1303091[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.012 0.97 10.7 2.4 1 23 254 276 254 277 0.95 2 10 0.0027 0.22 12.7 0.9 1 23 284 306 284 306 0.98 3 10 0.03 2.5 9.4 1.6 1 23 337 360 337 360 0.96 4 10 7.9e-06 0.00066 20.6 1.5 2 23 364 386 363 386 0.96 5 10 0.00018 0.015 16.4 0.6 2 23 390 412 390 412 0.98 6 10 0.071 5.9 8.2 0.6 2 21 426 445 425 450 0.93 7 10 6.6e-06 0.00055 20.9 0.3 2 23 459 481 458 481 0.95 8 10 0.26 22 6.4 2.1 1 23 487 510 487 510 0.93 9 10 0.00048 0.04 15.0 0.4 3 23 521 541 520 541 0.98 10 10 3.8e-05 0.0031 18.5 0.9 1 23 547 570 547 570 0.98
Sequence Information
- Coding Sequence
- ATGGAGACCGTTAAATCGGAATTTCTACTAACTAAAGTGTGCCACGGGTGTTTAAGTAACGACAGAGAAACAGTAGTATCAAAGGAGACATCTCAACTGTATTTGCATTTGTTAGACAATGGTGTATCGTCCGAACGTAAAGCATTGCCTCTATGCTGGGAATGCAGAGctgttttaagaaaaataaaaagatttcagaatcaaataaaaaatgctcAAATTTCATTGCTCCTCTATAATTGGGAAACATCATTATCAAACTTACAAACAACTTCAAAATGTGATTACGATCACGAATACACGTTCGAAGAGAAAGAACCGCAAATAACAGAAAAACAGCCAAATTTTCCGCAAATGAACAAAATAGTAACTCCTATATTACGTGAACCGCAACTGATCAAAAATGACCAAATAAAAATCGAGATCGTCCCAACAGAAGCGTCAGAGTTATTATTATCAACGGAAGAAGTATTTGACTGTCAATTGTCGGCCAAAGAAGAGCTCGATGATTTTGATCATTACGATGACTCTCAGAATGTTACTCTAGACATTACTCGTAAAGAAAAAGAGAAAAGACAAAGAATAAAACCAACTTCCATAAAACAGTATGAAAAATATGCTTTTTTCTCGAAAGAAAAGGATAAAGTTAAGGCTGGAGATTTgaagaaatattataaaactattttactgAATGATAGTCAAATTGAAGAGTATTTTAATGCTAGGTTAAGGAGAGACAGAAGTTTTGCTAGACTGAAATATCGATGTGAAGAATGCTTGCTAGGTTACAATGATAAAAAAGACTTTCGTAGACATAATTCAATACATCataatagtTCAACAGATTCATTCAAATGTACGGAATGCAAAATGCAATGTCCAACGCTGGAAACGTTGGCCCAACATTGGATGATACACACCGGTCTGCTGCAGTGCCTGCTCTGTGGAGACCTGCATCAGAGTACAGGGGAGATGAGGAAGCACGTGAACAGAGCTCACACATGCCGGTTCACATGCAAGGAGTGCGGGAATCAGACCAGAACTTTAAGAGAATTCAGTCTTCACTATAAAAATGTACACGAAAAGTTGGTTTGTGATCATTGCGGGAAAGGATTTTATCAGAAACGCGTACTCGAAAGTCACATGAGaCGTAACCACCTACCCGCAAAATGCGACATATGCGGTCGACAGTACGCCATGTACCACACACTAGAGGTGCACCTCCGCACCGTCCACCCCGAGGTCATGAAGGGCGCGTACAACAGAGACGCGTCGTACTGCGTCGAGTGTGACAGACAGTACCCCAGCGTCTACAAGTACAGGAAACACTTGAAGCAGTCCGTCAGACATACGCCGCGGATGAAAGTGAGGATACCGTGTCCGGAGTGTGGGAAGGTGTTCAGTAGAACAAACTACATGAACAATCACTACAGATTGTTCCATTCGAAGGACACGAAACATTACTGTCAGCTCTGTAATAAGTTATTCGTGACTGGATACGCGGCGAGGAAACACAAACAGTATGTTCATGATAAACAAGCGATGCCCAAGAACAAGATATGTGATATTTGCGGACGGGGATTCAGTACAAACAGAATCCTAGACAACCACCGGCGGACCCACACCGGCGAGCGCCCGTACAAGTGTCCGCACTGTACGGCCGCGTTCGCGCAGAACACCGCAATGCAGACGCACATCAAATCGCAACACAAAAGCTTAATACCTATAGAAATACAACTACATCATATGACGTGA
- Protein Sequence
- METVKSEFLLTKVCHGCLSNDRETVVSKETSQLYLHLLDNGVSSERKALPLCWECRAVLRKIKRFQNQIKNAQISLLLYNWETSLSNLQTTSKCDYDHEYTFEEKEPQITEKQPNFPQMNKIVTPILREPQLIKNDQIKIEIVPTEASELLLSTEEVFDCQLSAKEELDDFDHYDDSQNVTLDITRKEKEKRQRIKPTSIKQYEKYAFFSKEKDKVKAGDLKKYYKTILLNDSQIEEYFNARLRRDRSFARLKYRCEECLLGYNDKKDFRRHNSIHHNSSTDSFKCTECKMQCPTLETLAQHWMIHTGLLQCLLCGDLHQSTGEMRKHVNRAHTCRFTCKECGNQTRTLREFSLHYKNVHEKLVCDHCGKGFYQKRVLESHMRRNHLPAKCDICGRQYAMYHTLEVHLRTVHPEVMKGAYNRDASYCVECDRQYPSVYKYRKHLKQSVRHTPRMKVRIPCPECGKVFSRTNYMNNHYRLFHSKDTKHYCQLCNKLFVTGYAARKHKQYVHDKQAMPKNKICDICGRGFSTNRILDNHRRTHTGERPYKCPHCTAAFAQNTAMQTHIKSQHKSLIPIEIQLHHMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -