Tvar020501.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trilocha varians
Gene Symbol
-
Assembly
GCA_030269945.2
Location
AP028279.1:6296347-6299183[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.021 1.7 9.9 3.8 1 23 217 240 217 240 0.94
2 16 0.033 2.7 9.3 1.1 1 23 245 267 245 267 0.97
3 16 0.0014 0.12 13.6 1.0 1 23 297 320 297 320 0.97
4 16 0.0017 0.14 13.3 0.4 2 23 377 399 377 399 0.95
5 16 0.0029 0.24 12.6 5.3 1 23 405 428 405 428 0.93
6 16 0.0023 0.19 12.9 0.1 2 21 432 451 431 452 0.92
7 16 0.0084 0.7 11.1 0.6 2 23 461 483 460 483 0.90
8 16 0.31 26 6.2 0.4 1 22 488 509 488 511 0.77
9 16 0.024 2 9.7 0.2 2 23 524 546 523 546 0.92
10 16 0.00034 0.028 15.5 3.8 1 23 552 574 552 574 0.98
11 16 6.2e-05 0.0052 17.8 0.3 1 23 607 629 607 629 0.98
12 16 0.061 5.1 8.4 0.7 2 23 633 653 632 654 0.93
13 16 0.0036 0.3 12.3 3.6 1 23 663 686 663 686 0.95
14 16 7e-05 0.0058 17.7 3.4 1 23 692 714 692 714 0.99
15 16 0.001 0.087 14.0 2.7 2 23 720 741 719 741 0.96
16 16 0.048 4 8.7 3.2 1 23 747 770 747 770 0.97

Sequence Information

Coding Sequence
ATGGACTCTCAATTCAATTATGAGAACTACATAGACAGTGAAAGCATTGAATGGCttcgtaataaattaaatagtgtATGGTATAATGCAAAGTTCTGCGGCATATGTCTCGGAACACAAAACCTCAACTCTGTTAATATGGAGATACTTGTAAACAGACAACAGGAGTCTAAGTCACTTTTGGATatcattagttttatttttaaagaagatATTGAAGACCTAATGTCCTGTCCGTACATATGTGATAAATGCATAGAAAAAATACTACAATCTTTCATCTTCATCaacaacacaaaaaaattatcaaaaattataaacagTTGTATCAAAGAAATGTATCAAGAAATAGGAGATTTAAACCAACACATACTAAATCTAATAAGATgtgaaaattcaaatttaatgaTAGTTTTGgccaaaaataaagaattactATCAGATATCCGAGAAATGAATACTGTCTCAGAAATTGTGCCTACACAAAAACCGGTAATAAAACTACCAATAATTTCAGAGGTTAGACCAGAACGATTGACCGACCATGATTATATTACCACAACGGAGCATATCACAGCGAAAGCGGGCGAATTTGTCATAAATCCAATCAAAATGACAAACACACCGTCAGCCCCAGAATACATGATTTACAAATGTACGAAATGTGCAGCGATTTTCACAACTCACAAATCGTTGAAAGAACACGAAAAATTCAAACACTGTAATAAAGTTTACAGTTGTAAGATTTGCTCGAAAGTCTATTTAACTTTGCAATCTCTAGACTTACATTATAAATCTCATGATGTTGCTCGCTGCAGATTTTGCATGGACATAATGTTAGAAAATGAATTAAtggaacatttaaaaaagaatcatgGATCTTCATTATTTTCGTGCGAGATTTGTGATAGTGTTTTCTACAATCACGAAGCATTTCAGATTCATGTTAAAAGCAGTCATGTTCCTTCTCAACAAGATGTGTCTCTTTGCCAATATTGTTGTCAAGTGTTGGGTGATTCTACACATAAATGCAAATATAATTGCCCGGAATGTTCTGAAACTCCTTGCATACATCATAGATACTTAATCAGCTATAGAGACCAAATGCTAAGTCATGCTAGTAAAGCTGTATGCTTGGATTGCAATTACACAACTTCAAGGAAGGAGTATTTGATCACTCATGCAAATAGAGAACATTTAGATCACCATCCTTTTACCTGTATGGAGTGTAATAAGCAGTTTTATACAAAACACAGCCTTAAGATGCATTATGATCAATTTCACTTGGATATTACTTGTGAATATTGTGATAGAGAGTTCAAAAGTGCAACAGTCCTCTCTAGACACAAACTTATGTGTCAAAATATTGAACGTGTAATAAAATGCAGTAAATGTGAAGCGTCTTTTGAAAATTCAAACGATTTAGACAAACACGTGTTTTTGAAACACGATAACGGCGGTTTTCAATGTGATTTGTGCAAAAAACGCTTTCTTGAAGACATTGAATTGCAACAACACAAAGTTATGATACACACCACAGTTCAGTACAAAAAACGAAGAAGAAACATCGAGTGTACGTTATGTgatatacaatttaaaactataaaattaatgcAACAACATCAAGACGAAATACATAGCCCTGGTACATTATTTCCTTGCAAAAATTGCCCGAAAAAGTTcatcaaattaaaacaattgcaattgCACCAACACAAACATGGTGATAGGAAAAAATGCGAAAAATGCAAAAGGAAAATCATTGCAGCATTTTACATGAAACATGCTATTGGATGCAACGCAACCTTTTCCGAAAGCTACGCCTGTGAGATTTGCGGCAAAGTATTACACACCGAGACGGCTTTGAAAATACACTTGAAAACGCATAAAAGAGTCTCGTGTGAGATCTGCAATAAATCCGTGAGGGAATCCTTGATAGAAAAGCATTTGGATAGACACCACAACGTGATGAAACCTAAGTCATTCCACGCTTGCGATTTGTGCGGACATGTGGTACGAAAAAAGCATGAATTGGAAACGCATATTAATAGATATCATCTCAAAATTAAGCCGTTTAAATGCGACAAGTGTGATAAAACTTTTTGCGGCCGAGCGAGATTGAAAGAGCACCTTTTAACACACGAAATTAACACCTgcatttgtaatatttgtaaCAAAGTTTTAGCAAATCGAGTATGTCTTAAAATGCATTTAAGAATTCACACTGGAGAGTGTCCATACACTTGTGAGCACTGTGGAGATAAATTCCGTTCGGCCAGTATTCGAAAAACCCATATACGGAAAAAGCATACAGAGAAATCTGTTTGCTGTCCGTCTTGCGATAGTATGTTTCATTTTGTTAGAGAGATGAGGTATCATTTCAAACACGTACATTGGAAAGATAAGGAGAAACCTTTTAATTATAAAGAGGCACTACCAAAAACCTATCATCATTTGTTTGAAGATAGTAGATTGCCTAAAATTGACAGCTAA
Protein Sequence
MDSQFNYENYIDSESIEWLRNKLNSVWYNAKFCGICLGTQNLNSVNMEILVNRQQESKSLLDIISFIFKEDIEDLMSCPYICDKCIEKILQSFIFINNTKKLSKIINSCIKEMYQEIGDLNQHILNLIRCENSNLMIVLAKNKELLSDIREMNTVSEIVPTQKPVIKLPIISEVRPERLTDHDYITTTEHITAKAGEFVINPIKMTNTPSAPEYMIYKCTKCAAIFTTHKSLKEHEKFKHCNKVYSCKICSKVYLTLQSLDLHYKSHDVARCRFCMDIMLENELMEHLKKNHGSSLFSCEICDSVFYNHEAFQIHVKSSHVPSQQDVSLCQYCCQVLGDSTHKCKYNCPECSETPCIHHRYLISYRDQMLSHASKAVCLDCNYTTSRKEYLITHANREHLDHHPFTCMECNKQFYTKHSLKMHYDQFHLDITCEYCDREFKSATVLSRHKLMCQNIERVIKCSKCEASFENSNDLDKHVFLKHDNGGFQCDLCKKRFLEDIELQQHKVMIHTTVQYKKRRRNIECTLCDIQFKTIKLMQQHQDEIHSPGTLFPCKNCPKKFIKLKQLQLHQHKHGDRKKCEKCKRKIIAAFYMKHAIGCNATFSESYACEICGKVLHTETALKIHLKTHKRVSCEICNKSVRESLIEKHLDRHHNVMKPKSFHACDLCGHVVRKKHELETHINRYHLKIKPFKCDKCDKTFCGRARLKEHLLTHEINTCICNICNKVLANRVCLKMHLRIHTGECPYTCEHCGDKFRSASIRKTHIRKKHTEKSVCCPSCDSMFHFVREMRYHFKHVHWKDKEKPFNYKEALPKTYHHLFEDSRLPKIDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-