Tvar010441.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_030269945.2
- Location
- AP028268.1:179931-190241[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0061 0.51 11.6 7.1 1 23 1450 1472 1450 1472 0.98 2 10 0.23 19 6.6 0.2 1 23 1479 1501 1479 1501 0.96 3 10 0.98 81 4.6 4.3 1 23 1505 1528 1505 1528 0.98 4 10 4.4e-06 0.00036 21.4 0.2 2 23 1780 1801 1780 1801 0.97 5 10 0.003 0.25 12.5 0.6 1 23 1807 1829 1807 1829 0.97 6 10 0.00073 0.061 14.4 1.3 1 21 1835 1855 1835 1860 0.93 7 10 0.00035 0.029 15.5 0.4 1 23 1868 1891 1868 1891 0.93 8 10 0.024 2 9.7 0.1 1 23 1897 1920 1897 1920 0.94 9 10 5.7e-06 0.00047 21.1 3.4 1 23 1929 1951 1929 1951 0.98 10 10 0.00023 0.019 16.0 1.1 1 23 1957 1980 1957 1980 0.97
Sequence Information
- Coding Sequence
- ATGAGTGATTTGTCGGAATCTCCGGCTAACGCCCGGCGCCCTCTGGTTCCCGGGCCAGAGGGTGTGAAATTGGCTACCGAAGGCTGTGTAGAGGTGGGGAACCAGGCCTCTACATCAGCAAATGCTACTGGAAATAAGAAGATGATTCAACAAATATTCCATCCAAGTTTGCTTAATAGTAGACCAAGAAGCGCCTCTGTAGGCACGTTACCAAAATTACCTGTTACTGTTCAACCGCCACCAGTTGAGAACACAGAAACTAAATCTTCCAATCAACCTAGCCCTCACCCTCCTCAATGGCAAAAAATACCAATGAGCAACAATCGTAAGCGTAAAAAAATTACGCAAACACCATCCCCCGAAAGTATTAAGAACACAAATAGATACAGCGATCTACCTGTAGATTTAACTGATCAAGACGAAGAAGTCAAAATACCTAAACCCAACAAACCTCCTCCTATCATTCTATACGGAGTTGAAGATGTGGGCAAGTTGACAGAGTTACTACAGACTTGTGCAAAAACGGAGGATTTTACTTACAAAATAGTGAACAGAAATCAAATGCGAATAAGCTGCGCCGATGTAGAGACACATAAGAAGCTTATTTCAATAGTTCGTGAAAAGGGCCTCGTAGGGCATACTTTCAATCGAAAAGACCAACGGAATTACagaatagtaattaaaaatcttCATCACTCAACGCCTATTGCTGCCATACTCGAGGAAATAGAGAACACAGGAAACATAGTTGTGGGTGAAATCATCAATTCTAAATATGGACCGGAAAAGATACCGACCTCTACCTTCTTTGTGAATCTTAAGGCTGGACCTGAAAATAAAGCAGTAAAACAGCTAAAATACATTTATCACCAGTCGGTGGTCATTGAGGATCCAAAGAAGCAAAAATCTATTGTGCAATGCCAACGATGTCAGCAGTATGGCCACTCTAAAAATTATTGTATGAGGCCATACAGATGTGTGAAATGCGGAGATGCACATAGAACATCAGAATGCACAAAACGCGATCGTAAAACCCCGGCTACATGTGCCTTGTGTTTTGGACCACATCCAGCCAATTATAAAGGGTGTGAAGTATACAAAGAGATTCTGGCAAGAAAAACTGCAACAGTAAGGCCTATTAAGGATAAAGTTAACAATAATCCAGCTGCAAAACCAGTACCTAATCTCAATTCAACTAGCATTGGAACGAAAACTGACAATGTATGGATGACCAAAAAACCACCACAACCAAAGGAACCAAATCCGATACTAGAATcaatttcaaacaatttaaatccCTCAAGTACAGCGCTGGAAAAAATTTTAACACAGCAAACAGAAAAATTTGAATTAATCTTACAACAAATGAGTAATTTAATGCAACTCATAACAACGCTCTTAGAAAAAATTAATCAAGTAATGGCCTTGCGCCTAGCAACTTGGAACCCAAATGGCCTTGCACCCAACAAAGAAGAAGTAGATCTTCTATTAAGACAACATAAAATAGATATATTGTTGATATCAGAAACACATTGCACTGCATCTTCCAGTGTAGTATTTGGTGGATACTTAACTTACACTACAAATCATCCCGATGGAACAGGACACGCGGGATCTGCTATCATTATACGCAGCAGTATAAGTCACCAACTCCTGCCGCAATATAAAACAGCACATATTCAAGCTTCAACCATATCTATCAAGGAGAAATCTGGCTACTTCAATGTGAGCGCTGTATATTGTCCACCTAGGCACAAAATATCCACTGAAATGTTTGATCATTTCTTCAACACCTTGGGTGGAAGATTTATAGCCGGTGGTGACTGGAATTCGAAGAATACTCACTGGGGTTCAAGGTTGACTACAACTAGAGGAAGACAACTGCGTGCTAGCATTACGCATCATAACCTGCATGCTATATCAGCACTTGAACCTACATATTGGCCTACAGATACAAATAAGACTCCAGACCTGCTTGACTTCTTCATTATTGGAGGCTTATCTAGACATTATTTCAAACCGGAGCCTTGTCTGGATGGATCCTCAGATCATACACCTGTGCTTTTAACAGTGAGTACCATGATAATTGAATCTAGTAAACCAATTACTCTTACAAACGGGCGTACAGATTGGGAATACTTTCGGGACTACATTGAAGATAACATCAAATTGCAAGTAGCACTCAAGTGCGCTGATGATATTGAGACTGCTACCAAAAGTATTACGTCTCTAATACAAGATGCTTGCTGGAGAGCAACACCTGAACTTACAGATTGTGGCACTGCAACGAACATCCCACTACatataaaagcaaaaataattgaaaagcgTAGGGCGCGCAGAGTTTGGCAACATAGTAGAAACCAAGAAGACAAACGCGAATTTGGCAGGAGAAGTCGCAACCTTAAGTTACTACTGCAAGAATGGCACAATGAGACCCTTAGTGCGAGATTAGAATCACtgactccaaccgctcatacaaATTATTCATTGTGGAAATTCACTAGGTCCTACAATCAACCTCAAATTGGTAAGCCTCCAATAAGAAAAGACAATAATAATTGGGCCCGCACGGCTCAAGATAAAGCTAACACATTTGCGGCTCATCTGGCGACGGTGTTTGCACCCAATGTGACTGGCGACAGCCTGGAAGAGGAGGAAATGGACGCTGTACTAAAGGAGCCCTATCAACTGTCGCTACCACCTAAACCTATAACGGTGAAAGAGGTCTGGCGAGTAATTCAAGATCTCAAAGATCGAAAAGCGCCAGGCTACGATCTGATTACAAAGGAAATATTGAAGCAGTTGCCAAGGAGAGCAGTAGTATATTTAACAACTTTGTATAATAGTATAGTAAGAGTGCAGCATTTCCCGTCTCTGTGGAaagtttctaaaataataatgattcacAAGGCTGGCAAGCCACCAAATGATGTTACATCATATAGACCGATCAGTCTACTGCCGATCTTGTCGAAGGTTTGCGAGAAGCTATTGCTGAGTAGAATACTACCTATCTTAACAAGCACTAGCATCATCCCAGATCATCAATTTGGGTTTCGTCCGCTTCATTCGACAATAGAACAGGTTCATAGAGTGACTAACAAAATCAGAGAATCACTGGAAAGGAAGGAATACTGTTCTTCAGCTTTTCTAGATGTCCATCAGGCGTTTGATCGGGTGTGGCATAAGGGGCTACTGTATAAATTAAAGATAACACTTCCACATAGTTTCCACGGCTTGCTACGGTCATACTTGACGCATAGACTTTTTCAAGTCCAAGAGTCGAATGAAACTTCACCATTTTATGAAATTCGAGCTGGAGTGCCACAAGGTTCAGTACTGGGCCCTGTGCTTTACACTATCTTCACGTATGACTTACCACAAGTTCCAGGAGTGACTATAGCTACGTTTGCTGATGACACCGCTTTGCTCTCTAGCAATGCAAATGCGGTGTTGGCTTCGCAAACATTGCAGGGAGGACTGGATGAAATCACTCACTGGTTGAACAAATGGAGGATAAAAGCTAACGTATCAAAATCAACACATATAACCTTCACCCTAAGAAAGGGCGATTGTCCTCCAGTGAACTTGGGAAATAGCAGACTTCCACACAGCAATTCAGTTAAATATCTCGGGCTGCATTTAGATCGGAGACTGACATGGAAGAATCATATAAAATCAAAGAGAGAggaattaaacataaaatacaggACACTCCTCTGGCTATTGGGACGTAACAGCAAATTATCAATTGACAACAAGTTACTGATATACAAGGTTGTTCTAAAACCAGTTTGGACATATGGCATACAACTCTGGGGAAGCGCCTGTGATTCCACTATCGCAGTGCTCCAAAGacttcaaaacattattttacggACCATCGCTGGGGTACCCTGGCATGTCAGAAACTCCGAAATTCATGAAAATCTTGAAATACCTACAGTAAAGGAAGAAATAggattttattctaaaaactaTCAGCAGCGATTGTCCATGCATCCTAATAAACTGGCCGCCCAACTGAAGaaagaaaataaaataatcctcATTTCCAGTGCAAATGTGGAGGATGTAGAGAAGTTATCGGAAGAAGATCTGAACGAGTTGTTAGCTGATAAAGATATCTCATTGAAAGATGAAACCAAAAAGAagaaaactaaaaagaaaagaGACGGGTCTAAAAAGGAAAACGGCGAAAAGAGTAAGAAAGAAGAAATCCACAAATCATCAATTAGGAAACACATAGATCTGGACCCCGAGAAGATTAGAATAGTAATATTGAACCCGGAGGAACAACTTAAAGCAAAAGAGTTAGAAACGAAAACAAGTTCTAAACTGCCGTACTGCTGCCATCTTTGTTTCAAAGGATTCAATTACGAAGAGAAACTACAGAACCACATGAAGAAACATAGCCCGTCTCGCGGTAAGTTCTCGTGTGACGTGTGTCAGATGTACCTGCCCACCTCGTACAGCCTCAGCGTGCACTCGCTCATACACACGCAGCGGTACGAGTGCGTGCAGTGCGGACACAGGATGACAGACAAGAACAGCATCCTGCACCACTACAGAACCAAACATGAAGGGTTATCGTCTGTGTACACATGTAACGTGTGCGTAACAGTCGCACGCACTACGGGCACGTGCGGCGCCACCACAGCGCGCGCCCCGAGTGCGAGCGATGCGGGAAGACGTTCGTCAACAACGACTCGCTCAACGAACACATGCTGTGAGTACGACACGTGggtgagagagagagagagagagagagtgtcTGTGTGTACAGTAACAGTCGCACGCACTACGGGCACGTGCGGCGCCACCACAGCGCGCGCCCCGAGTGCGAGCGATGCGGGAAGACGTTCGTCAACAACGACTCGCTCAACGAACACATGCTGTGAGTACGACACGTGggtgagagagagagagagagagagagtgtcTGTGTGTACAGTAACAGTCGCACGCACTACGGGCACGTGCGGCGCCACCACAGCGCGCGCCCCGAGTGCGAGCGATGCGGGAAGACGTTCGTCAACAACGACTCGCTCAACGAACACATGCTGTGAGTACAACACGTGggtgagagagagagagagagtgtcTGTGGGTACAGTAACAGTCGCACGCACTACGGGCACGTGCGGCGCCACCACAGCGCGCGCCCCGAGTGCGAGCGATGCGGGAAGACGTTCGTCAACAACGACTCGCTCAACGAACACATGCTGTGAGTACAACACGTGggtgagagagagagagagagagagtgtcTGTGTGTACAGTAACAGTCGCACGCACTACGGGCACGTGCGGCGCCACCACAGCGCGCGCCCCGAGTGCGAGCGATGCGGGAAGACGTTCGTCAACAACGACTCGCTCAACGAACACATGCTCATTCACAAAGGTATAAAGAACTACGAGTGCGAGGTGTGCGGCGCTCGGTTCCGAACCCGGACCCAGGCCAAGTATCACGAACTGAAGCACTCCAACGCACGGGACTACTACTGCGTCGAGTGCGATACTAGGTTCAAATCACCGTTTAGTCTGAAGCAGCATCTGTCTAAAAGCGTGAAGCACAGAGATCCGGACAGTCTCAAACACCGCTGCACGTTATGCGACAAGCGGTTCGCGTCGGCCGGCGCGCTGGAGTCCCACCGCGGCGTGCGACACGAGGGCCTGCGCCCCCACGCGTGCGGCCAGTGCGGCGCCTCGCTCGCCTCCGCCGCCTCGCTGCACAAGCACGTGCGCGCCGTGCACCAGGGACACAAGCCGCCGCTCGCGCACGTCTGTCACACCTGCGGGAAGGCGTTCCGGAGTTCAAGCGTGTTGACGAACCACGTCCGCACTCACACCGGAGAGAAGCCGTTCTCGTGCGAGGTGTGCTCGCGACGGTTCTCACAGCGCACCGCCATGAAGACGCACCTGCGACTGGTGCACCTCGCCAGGACgtga
- Protein Sequence
- MSDLSESPANARRPLVPGPEGVKLATEGCVEVGNQASTSANATGNKKMIQQIFHPSLLNSRPRSASVGTLPKLPVTVQPPPVENTETKSSNQPSPHPPQWQKIPMSNNRKRKKITQTPSPESIKNTNRYSDLPVDLTDQDEEVKIPKPNKPPPIILYGVEDVGKLTELLQTCAKTEDFTYKIVNRNQMRISCADVETHKKLISIVREKGLVGHTFNRKDQRNYRIVIKNLHHSTPIAAILEEIENTGNIVVGEIINSKYGPEKIPTSTFFVNLKAGPENKAVKQLKYIYHQSVVIEDPKKQKSIVQCQRCQQYGHSKNYCMRPYRCVKCGDAHRTSECTKRDRKTPATCALCFGPHPANYKGCEVYKEILARKTATVRPIKDKVNNNPAAKPVPNLNSTSIGTKTDNVWMTKKPPQPKEPNPILESISNNLNPSSTALEKILTQQTEKFELILQQMSNLMQLITTLLEKINQVMALRLATWNPNGLAPNKEEVDLLLRQHKIDILLISETHCTASSSVVFGGYLTYTTNHPDGTGHAGSAIIIRSSISHQLLPQYKTAHIQASTISIKEKSGYFNVSAVYCPPRHKISTEMFDHFFNTLGGRFIAGGDWNSKNTHWGSRLTTTRGRQLRASITHHNLHAISALEPTYWPTDTNKTPDLLDFFIIGGLSRHYFKPEPCLDGSSDHTPVLLTVSTMIIESSKPITLTNGRTDWEYFRDYIEDNIKLQVALKCADDIETATKSITSLIQDACWRATPELTDCGTATNIPLHIKAKIIEKRRARRVWQHSRNQEDKREFGRRSRNLKLLLQEWHNETLSARLESLTPTAHTNYSLWKFTRSYNQPQIGKPPIRKDNNNWARTAQDKANTFAAHLATVFAPNVTGDSLEEEEMDAVLKEPYQLSLPPKPITVKEVWRVIQDLKDRKAPGYDLITKEILKQLPRRAVVYLTTLYNSIVRVQHFPSLWKVSKIIMIHKAGKPPNDVTSYRPISLLPILSKVCEKLLLSRILPILTSTSIIPDHQFGFRPLHSTIEQVHRVTNKIRESLERKEYCSSAFLDVHQAFDRVWHKGLLYKLKITLPHSFHGLLRSYLTHRLFQVQESNETSPFYEIRAGVPQGSVLGPVLYTIFTYDLPQVPGVTIATFADDTALLSSNANAVLASQTLQGGLDEITHWLNKWRIKANVSKSTHITFTLRKGDCPPVNLGNSRLPHSNSVKYLGLHLDRRLTWKNHIKSKREELNIKYRTLLWLLGRNSKLSIDNKLLIYKVVLKPVWTYGIQLWGSACDSTIAVLQRLQNIILRTIAGVPWHVRNSEIHENLEIPTVKEEIGFYSKNYQQRLSMHPNKLAAQLKKENKIILISSANVEDVEKLSEEDLNELLADKDISLKDETKKKKTKKKRDGSKKENGEKSKKEEIHKSSIRKHIDLDPEKIRIVILNPEEQLKAKELETKTSSKLPYCCHLCFKGFNYEEKLQNHMKKHSPSRGKFSCDVCQMYLPTSYSLSVHSLIHTQRYECVQCGHRMTDKNSILHHYRTKHEGLSSVYTCNVCVTVARTTGTCGATTARAPSASDAGRRSSTTTRSTNTCCEYDTWVRERERERVSVCTVTVARTTGTCGATTARAPSASDAGRRSSTTTRSTNTCCEYDTWVRERERERVSVCTVTVARTTGTCGATTARAPSASDAGRRSSTTTRSTNTCCEYNTWVRERERVSVGTVTVARTTGTCGATTARAPSASDAGRRSSTTTRSTNTCCEYNTWVRERERESVCVYSNSRTHYGHVRRHHSARPECERCGKTFVNNDSLNEHMLIHKGIKNYECEVCGARFRTRTQAKYHELKHSNARDYYCVECDTRFKSPFSLKQHLSKSVKHRDPDSLKHRCTLCDKRFASAGALESHRGVRHEGLRPHACGQCGASLASAASLHKHVRAVHQGHKPPLAHVCHTCGKAFRSSSVLTNHVRTHTGEKPFSCEVCSRRFSQRTAMKTHLRLVHLART
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -