Tvar010702.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028268.1:2983601-2993638[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3 1.9e+02 3.5 0.7 1 20 239 258 239 262 0.81 2 12 0.65 54 5.2 0.5 2 23 271 291 270 291 0.79 3 12 2.1 1.8e+02 3.6 2.0 1 23 295 317 295 317 0.97 4 12 0.25 21 6.5 0.0 1 23 324 347 324 347 0.93 5 12 0.0044 0.36 12.0 1.0 2 21 352 371 352 372 0.92 6 12 8.2e-05 0.0068 17.4 0.7 2 23 387 408 386 408 0.94 7 12 0.00013 0.01 16.9 0.3 1 23 413 435 413 435 0.98 8 12 8.6e-05 0.0072 17.4 4.3 1 21 444 464 444 469 0.95 9 12 1.7e-05 0.0014 19.6 3.0 1 23 477 500 477 500 0.93 10 12 0.00059 0.049 14.7 0.3 1 23 506 529 506 529 0.95 11 12 0.0062 0.51 11.5 0.6 3 19 542 558 540 563 0.90 12 12 0.011 0.92 10.7 1.5 1 23 572 595 572 595 0.98
Sequence Information
- Coding Sequence
- ATGaaagaaattaatataaatatagaaGGATACAATGTGAATGGAATATGCGTGTGTTGTTTGAACTACAATCGGAAAATGTATTGTTGCAAGGAAGTGATGGAATTTTACAAGTTAATCAGTAACATCGATATACCAGATGGTCTAACAATTCAAGTTTGCTGGGAATGCTTTGGAGTCATCAAAACAGTTAAAAAATTTCAGCAACAAATTCTAAAATCttacaatgttttatttgaatattcTCAGAAGTACACATTTCTCAATTCCCCAAAAGATTTAACTAAACATGCATCATCAAAACTGGCTATAGTGAAATTGGATGACACAACGGTCAACCAGAAAGATGACTTGGGTGTCGAAGTTAAAATTGAACATGACAATGATGAAATATTTGCTGtttctgaACCAGTCGTCGGAAACGAGGTGAAGATCGAATATGAACCGCTGGACTATTTGGATGATTTTAATAGCCAAGACGCAGGAGAGGTTATATCTTCAGAAGAAGACGTCAATCTTTTGATGCTTAAAGAAAGGAAACATAAAAGAGAACGAAAGAAAagcaaaagaaaaacaaaaTCAAAAGAAGAAAAACCCAAGAATAAGATGAAAAATTTACCCGAAGACCAAGTAGAGCTATGCACCATGAATGATGAGGAGATGATAGTCATGAGGAACAATGATCGGGCCAGTGAATATTTTCAGTCATTGAAGTTTAAATGTAATGATTGTCTGTTTGGCTTCAACATTGAGAAACTTATGAATGATCATTTTGAAGGGAAACATACTCCTaaaagCGACGACTGTCAAAAATGTGACATTTGCAACGCTTACTTCCGTTCTAAAGACATATCGGTGCACAGATCTTTGCACCAGAGAGCCTACAAGTGTTTGACTTGCGAATTTAAAACTACcctcaaaaaaataattcagcAACACATACGAACGCATACAGGGGTGAAAGAGCAGTTTATATGTAGCATTTGTGGGGCTGATGTGGGATCAAAAACAAGATTGAATTATCACAGAGCTGTTGCACATCGAGAAAAACCACAATGCGACTGTTGCGGTAAAGTATTTGCAAACAAAATGACTTTGAAGTATCATTTAAAAGTATTGCCACAGAAAACTGATAAACAGAAGGAGAAACTGTATTTGCCTTGTAAAGATTGCAACAAAGTGTTTTACACGAGGAAAAGTTATAGATCTCACGTTGTGATCCACTCCGGCCTGACCTACCCTTGCCCGATCTGCGGTAAACTGTTCCAATGGAAGCGCAACCTCGCCCGCCACACCCGCAACCATCGCGAGCGAGACCGCGGCGAGGTCTACGAGTGTCGGGAGTGCGACAAGACGTTCTCGAGCAAGGACTGTTATACTAACCACTTGCGGCTCAGCAAAAAACATATACCGCCCGATTCTTATGTGCACGTTTGCAATTATTGCGGTAAGAAGTTCTCAACAAAATACTGTCTAGTCGATCACATTGATTGGGAACATTTGAAGAGAATAAAATACCAGTGCAATGTTTGTTTTAAGgcATTTAAAACATCAAAGATATTGATAGCTCACGTCAACAACATTCACAGCGGCAAGAAGAAAGAAGAGGAAGGCGAACATTTATGTGATATTTGCGGTAAATCTTATaagACAGAAAAACGTCTCAAGGGTCACGTTTGGTCTATACACACAACTAGATCGACTTCAAAGAGCTTTAAATGCACGTTTTGTCCGGCCACGTTTACATGGCAGACATCGATATACAAACACATGAAGATGATGCATAATAGCAAGAGGAATAAGACAACAAGACCTCAAGTGAAGAAAGAAGAGACCTACCCAGGTCTAGAACTACCGAACCGAGTGCATTACTTtcaacaaaatatcaatttaGTACAGAATATTGTTCAGTCTGGACCCCATGAAGTTGTGCATAATTTGGGATAG
- Protein Sequence
- MKEININIEGYNVNGICVCCLNYNRKMYCCKEVMEFYKLISNIDIPDGLTIQVCWECFGVIKTVKKFQQQILKSYNVLFEYSQKYTFLNSPKDLTKHASSKLAIVKLDDTTVNQKDDLGVEVKIEHDNDEIFAVSEPVVGNEVKIEYEPLDYLDDFNSQDAGEVISSEEDVNLLMLKERKHKRERKKSKRKTKSKEEKPKNKMKNLPEDQVELCTMNDEEMIVMRNNDRASEYFQSLKFKCNDCLFGFNIEKLMNDHFEGKHTPKSDDCQKCDICNAYFRSKDISVHRSLHQRAYKCLTCEFKTTLKKIIQQHIRTHTGVKEQFICSICGADVGSKTRLNYHRAVAHREKPQCDCCGKVFANKMTLKYHLKVLPQKTDKQKEKLYLPCKDCNKVFYTRKSYRSHVVIHSGLTYPCPICGKLFQWKRNLARHTRNHRERDRGEVYECRECDKTFSSKDCYTNHLRLSKKHIPPDSYVHVCNYCGKKFSTKYCLVDHIDWEHLKRIKYQCNVCFKAFKTSKILIAHVNNIHSGKKKEEEGEHLCDICGKSYKTEKRLKGHVWSIHTTRSTSKSFKCTFCPATFTWQTSIYKHMKMMHNSKRNKTTRPQVKKEETYPGLELPNRVHYFQQNINLVQNIVQSGPHEVVHNLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -