Tvar013912.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028271.1:8491515-8498538[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00021 0.017 16.2 3.4 1 23 251 274 251 274 0.94 2 10 0.001 0.086 14.0 4.4 2 23 282 303 281 303 0.96 3 10 0.79 66 4.9 3.6 1 19 307 325 307 329 0.92 4 10 0.00018 0.015 16.4 4.2 2 23 335 356 335 356 0.98 5 10 0.00018 0.015 16.4 0.3 1 23 360 383 360 383 0.94 6 10 0.073 6.1 8.2 0.2 2 20 399 417 398 419 0.92 7 10 1.3e-05 0.0011 19.9 0.3 2 23 450 472 449 472 0.96 8 10 2 1.7e+02 3.6 0.1 2 23 495 515 494 517 0.88 9 10 0.0001 0.0084 17.2 1.2 1 23 521 543 521 543 0.97 10 10 2.5e-05 0.0021 19.1 0.7 2 23 550 572 549 572 0.97
Sequence Information
- Coding Sequence
- ATGTCTGAAGTAAAAGTGTGCAGGATATGCCTCAATACAAAAGTGAAATTGCATCCATTTGATAAATATAATCTTAAAGAATGTTACGAACAGATAATGGCAATGAAGCTCAAGAACAATGATGGTCTACCAAAATATTTCTGCTATGAATGTGCCGCCTTGATTCACAAgttttataaattcaaaaagaAATGTGAACTTGGACAGAGAGAGCTGAAACGGCTCATTGGGAAAGGAGGAATAACCTTACAAAAAGTTATGCAGATAGATCGAAGAgcaaaaaaatttacaacaaaTCTAAATGTAATTACTGTAACAGACAGAGTCAAAACTTTCTTCAAAAGACATAAAGAAAATCTGACTAACAAGAACAAACGTAAATCAAGAGAGTCTTTACATATAACCAAAATAGATCCAGAacattttgttgaaataaaagtgAAAACTGAAGATATGGTACATAAGGAAGAAACGTTAGACAATCACCATTCTGACAACATTGGCGATTCAACAGATGAAGACATTTGTTTAGATGAAATTAAAGAAGAAAAGACAAAAGTTAAAAGAGCACCGAGAAAGATAACCCATCGAAAGCAATTAAGTGTAAAGAAAAAGCATCCTAGGGTTAAATTGGAGAAAAAGAAACGGACATTAGATGAAAAGAATTGGCATTTGTCTAAATTGACAGAAGAGGCAGCCTTGGTACAGTTCCAGGCGAGGGCTACTGATTTGAAGTATATTAATGCAGTTTACAAATGCACTTTATGTTTAAAGAGATTTTCAAAGCAAGACATGTTGAAGAGACATAATAAATTGAGGCATAATGAGTCAAATGGTCGAATAGAGTGTCGTTTCTGTCACTTTCGGTTCAAAGTGAAGTCCCACCTTGAATTACACATTCGGGAACactttaatatatataaatgctTGCGGTGTGACCTCACATTCTGCAGAGAAACTTCAGCGATGCATCATGATGAATATCACAATGGTGTTACAAGAACTTGTGAATATTGCAATGAAACATTCAAacatttatCGACGTACTACACTCACCTCCGCAAGCACAGAAGCAAGCATGTGTGTCCCGTCTGTGGAGAGTCATTTGTCAGCCAATTGGGACTTAAATTGCACAAGAGCGTCAAACACTTTATGGAGACTgaTAAAGAGGGAGATGCagcaaacaaaaaaatttactgTGAAAAGTGCGACATAAAATTCGAGACAACTGGAGCATATGAAGAACATCTGACGCATTCTGCATTGCATTCCACGTCAGAAGACTTAGCTCCTCCTATGAATCTGAAGACGCCTATCTTACGTCGCAGAGCTAAGAGGGAACAGACGCCTTGTTCCATGTGTAACAAAGTGTTCTCATCGTGGGGAGCGTACGTGAAGCATCGCCAGACGTCGCACCCGGGGAGCAGGCCGCCCGAACAACTCGCCAAGGACAACGGCGCGGGACAGTCGCAGGAGCGGGTCGTCTGCGAGATATGCGGCGCTATGCTCTTTGCAAACAGCATGTACAGTCATCTCAACACACACACTCGTGAGAGACAGTTCGCGTGCAACACGTGCGGGATGAAGTTCAATCTTAAAACAACATTGCAGAGACATTACTTGGTGCATACAGGTGAAAAGCCTGTTGAATGTTCTCTATGTGACAAGCGATTCACGCAAGTATCCAGTATGAGATTACACTACAGAACTATACATTTAAAACAACCATATCCTAAAAGaAACAGAAACAAAAAATCAGAAGATCCTGAAGAAGCTGCCGCCATAGCTCAGTATTATCAGAACAAAGACACGGCCGAAGACTACTTACCTATAGAAAGATGGAGAATTTTgcgtttgtaa
- Protein Sequence
- MSEVKVCRICLNTKVKLHPFDKYNLKECYEQIMAMKLKNNDGLPKYFCYECAALIHKFYKFKKKCELGQRELKRLIGKGGITLQKVMQIDRRAKKFTTNLNVITVTDRVKTFFKRHKENLTNKNKRKSRESLHITKIDPEHFVEIKVKTEDMVHKEETLDNHHSDNIGDSTDEDICLDEIKEEKTKVKRAPRKITHRKQLSVKKKHPRVKLEKKKRTLDEKNWHLSKLTEEAALVQFQARATDLKYINAVYKCTLCLKRFSKQDMLKRHNKLRHNESNGRIECRFCHFRFKVKSHLELHIREHFNIYKCLRCDLTFCRETSAMHHDEYHNGVTRTCEYCNETFKHLSTYYTHLRKHRSKHVCPVCGESFVSQLGLKLHKSVKHFMETDKEGDAANKKIYCEKCDIKFETTGAYEEHLTHSALHSTSEDLAPPMNLKTPILRRRAKREQTPCSMCNKVFSSWGAYVKHRQTSHPGSRPPEQLAKDNGAGQSQERVVCEICGAMLFANSMYSHLNTHTRERQFACNTCGMKFNLKTTLQRHYLVHTGEKPVECSLCDKRFTQVSSMRLHYRTIHLKQPYPKRNRNKKSEDPEEAAAIAQYYQNKDTAEDYLPIERWRILRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -