Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028281.1:5402890-5405667[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.072 6 8.2 1.1 2 23 16 38 15 38 0.95

2 16 0.02 1.6 9.9 1.1 3 23 108 128 106 128 0.97

3 16 0.00012 0.01 16.9 2.0 1 23 132 155 132 155 0.95

4 16 0.024 2 9.7 1.5 1 20 160 179 160 181 0.91

5 16 0.0014 0.12 13.5 2.1 1 23 188 211 188 211 0.90

6 16 0.0013 0.11 13.7 0.3 1 23 218 241 218 241 0.95

7 16 0.00017 0.014 16.4 2.0 1 23 246 268 246 268 0.93

8 16 7.3e-07 6.1e-05 23.9 3.9 1 23 274 296 274 296 0.99

9 16 0.92 77 4.7 3.8 2 23 436 457 435 457 0.96

10 16 0.0095 0.79 10.9 2.1 1 21 461 481 461 484 0.96

11 16 1.3 1.1e+02 4.2 0.3 3 22 490 509 489 509 0.93

12 16 1.8 1.5e+02 3.8 0.5 1 21 516 536 516 539 0.87

13 16 0.00079 0.066 14.3 1.5 1 23 546 569 546 569 0.97

14 16 0.85 71 4.8 1.6 1 23 574 596 574 596 0.94

15 16 0.00018 0.015 16.4 2.7 1 20 602 621 602 624 0.94

16 16 0.012 0.98 10.6 5.0 1 23 630 652 630 653 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.072	6	8.2	1.1	2	23	16	38	15	38	0.95
2	16	0.02	1.6	9.9	1.1	3	23	108	128	106	128	0.97
3	16	0.00012	0.01	16.9	2.0	1	23	132	155	132	155	0.95
4	16	0.024	2	9.7	1.5	1	20	160	179	160	181	0.91
5	16	0.0014	0.12	13.5	2.1	1	23	188	211	188	211	0.90
6	16	0.0013	0.11	13.7	0.3	1	23	218	241	218	241	0.95
7	16	0.00017	0.014	16.4	2.0	1	23	246	268	246	268	0.93
8	16	7.3e-07	6.1e-05	23.9	3.9	1	23	274	296	274	296	0.99
9	16	0.92	77	4.7	3.8	2	23	436	457	435	457	0.96
10	16	0.0095	0.79	10.9	2.1	1	21	461	481	461	484	0.96
11	16	1.3	1.1e+02	4.2	0.3	3	22	490	509	489	509	0.93
12	16	1.8	1.5e+02	3.8	0.5	1	21	516	536	516	539	0.87
13	16	0.00079	0.066	14.3	1.5	1	23	546	569	546	569	0.97
14	16	0.85	71	4.8	1.6	1	23	574	596	574	596	0.94
15	16	0.00018	0.015	16.4	2.7	1	20	602	621	602	624	0.94
16	16	0.012	0.98	10.6	5.0	1	23	630	652	630	653	0.95

Sequence Information

Coding Sequence: ATGAACTTTACTGCGTACCCCTTCCGGCTACCAGAAGCGGACATTATGTGCTTGTACTGTTGCGAAGAGTTCCCAAACGCCGTCGATTTTCGCTCGCATATGAACAGAAAGCATAGTTTTCTCAATTGTAGTATGTTGTTTAGGCACTGCGGTGAAGCAAACTTGAAGACAGACTGCACGGTTTTACAATGTCGACGTTGTTCGGACATCGTCCCCGATCTGAATCTTGCTGCTAAGCATTTAGGAGACGTCCACGGTGTAGTCTTAGAACCGGGTCGTATTAACCTGGATCCGTTCAAATTTATAGACAATAAGCTACTTTGTGGGGTATGCGACAAAAAGTTTCCTTGTTTGCGTGAGTTGAGCAAGCACGTTATGACGCATTGCCGACACTTCATTTGCGACACTTGTGGCAGTTCGTACACAACGCAAGGTTCGCTAAGACACCACATTAAGTTCTCCCACAGCGGCGAGAAGCACATCTGTAGGAAGTGCTCTAAAACTTTCAAGTCTTTAGAAGCTAAGAAGAAACACGTGGAGTCTTCGGAGAAATGCTGGATTTATTGTTGCGCCGAATGTTCAAAGCGGTTCAGGACTTGGAGCACAAAGCAGAATCACTTGGTTGAAGTTCACGGTTTGCCCAGAAAGACTTATCCGTGCCCGGAGTGCAATCAAGTGTTTCGAGCTCGAAGTCGTTATAGAGAACATTTTGCCACGATTCACAATAATGAGTATTTCGTTTGCACTGTTTGCGAGAAGAAGTTCACAAATAAGATGTATTTGGAACATCATAGTGTGGTGCATACTGGCATCAAGAATTTCCAGTGCGAGTTATGTTCTAAGTCTTTCTCTAGGAAGTATTTGTTTACGAAACACATGCAGTCCCATAATGATTACAAGAAATACCAGAAAAGTGGAAAAACTGGACCGCGTTTCAGTGCGAAAACGAACGCTGAGATCATATTGAAATGTTCAACCATTTACCCGTTCAGGATGCAAGCTAAGTCGCTGATGTGCGTCTACTGCTGTGATGAGTTCGAAGATCCTGTCATATTCCGACAGCACGTCGACGAAATCCACCAGGATTTCACCATAACAACTGCCTTTGCCCATCTCGGTCGAGGAAAGGACTCTCTCAAAGTTGACTGCACGAACATGAAGTGTAGGCTGTGTGCAGAAACAGCGGAAACCCTGGAGGAAATGGCGGAACACATTCTCCAGTTCCATAACAATAGATCAACTTATAAACTCAACTTGGATTACAAAATAGGACTGCACCCGTACAAGCTTGAAAAGAACCAATGGCAATGCTGCCTCTGCAACGAAAAACTACCCTCGCTTGTGAAATTGTGTCGGCATACCACCTCCCATTATCTCCTTTACACGTGCGATACTTGCGGCCGAAGATATCTGACAGCCGAAGCTCTCAAATATCATATGCGATGTAATCATTCTGGCAAAAATATCTGCCGAAAATGCTGGAGAGATTTCCCGTCTCTCGAAACACGGAAGGAACACGTAAAAACGACGAAAAAATGCTGGCCTTTCTCTTGCGTTTACTGCGGTGATAGGTTCTTATCGTGGGAGCAGAAACAAAAACATCTAGTCGATAATCATGGACGTCGGGAGTCCACTTACACATGCCCAGAGTGCTCCATGGTTTTCCAAACTCGTAAATTGTTCTACAGCCACTATAAAGTGATGCATACCGATGACAGTTACATATGCACGTGTTGTGGTCTTCGATTCGAGTCCAAAAACCGTTTGGACGACCACAGATTAGGGCATACAGGCGAGAAAACATTTAAATGTCATATATGCGACAAATCTTTTTTGCGTAAAAAGAGTCTGACGCAGCATCTATGGATTCATAGCGATAATAAACGATTCTCCTGTGTGCTTTGCGAGAAGCAGTTTGCGCAGAAAGTGAGCTTGAAATGTCACATGAAATCACATCACCCTGAcgttgttttaaagttgtag
Protein Sequence: MNFTAYPFRLPEADIMCLYCCEEFPNAVDFRSHMNRKHSFLNCSMLFRHCGEANLKTDCTVLQCRRCSDIVPDLNLAAKHLGDVHGVVLEPGRINLDPFKFIDNKLLCGVCDKKFPCLRELSKHVMTHCRHFICDTCGSSYTTQGSLRHHIKFSHSGEKHICRKCSKTFKSLEAKKKHVESSEKCWIYCCAECSKRFRTWSTKQNHLVEVHGLPRKTYPCPECNQVFRARSRYREHFATIHNNEYFVCTVCEKKFTNKMYLEHHSVVHTGIKNFQCELCSKSFSRKYLFTKHMQSHNDYKKYQKSGKTGPRFSAKTNAEIILKCSTIYPFRMQAKSLMCVYCCDEFEDPVIFRQHVDEIHQDFTITTAFAHLGRGKDSLKVDCTNMKCRLCAETAETLEEMAEHILQFHNNRSTYKLNLDYKIGLHPYKLEKNQWQCCLCNEKLPSLVKLCRHTTSHYLLYTCDTCGRRYLTAEALKYHMRCNHSGKNICRKCWRDFPSLETRKEHVKTTKKCWPFSCVYCGDRFLSWEQKQKHLVDNHGRRESTYTCPECSMVFQTRKLFYSHYKVMHTDDSYICTCCGLRFESKNRLDDHRLGHTGEKTFKCHICDKSFLRKKSLTQHLWIHSDNKRFSCVLCEKQFAQKVSLKCHMKSHHPDVVLKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -