Tvar001161.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028257.1:1972153-1979245[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00016 0.013 16.5 6.4 1 23 357 379 357 379 0.98 2 11 0.12 10 7.5 1.5 2 23 387 409 386 409 0.95 3 11 0.32 27 6.1 4.2 1 23 413 435 413 435 0.95 4 11 6.1e-05 0.0051 17.8 1.0 1 23 453 476 453 476 0.93 5 11 0.00031 0.026 15.6 1.2 1 22 487 508 487 512 0.93 6 11 3.5e-05 0.0029 18.6 0.7 2 23 529 551 528 551 0.96 7 11 0.0011 0.096 13.8 1.1 2 23 567 589 566 589 0.95 8 11 0.00051 0.042 14.9 0.6 3 23 604 624 603 624 0.96 9 11 4.3e-06 0.00035 21.5 0.8 2 23 630 651 629 651 0.97 10 11 1.6e-05 0.0013 19.7 0.7 1 23 657 679 657 679 0.98 11 11 6.2e-05 0.0052 17.8 1.8 1 23 685 708 685 708 0.98
Sequence Information
- Coding Sequence
- ATGAAATATTACTGCTGCGTCAAAGGATGTAAAAacagtataaaaacaaaaaagaataatgCGGGTTCTATCATCACTTTTCActcGTTCCCTCGAAGTCCTCATTTGAGAGGCAAATGGCTGGATGCGATCGGTCGCCCTGATTGGGATGTTCCAAGCCATGCAATGGTCTGCAGTGAGCATTTCGCTTACAGTAAATTAGAATATGGAGCCAGTGGTACTTCTGTTGAAGACGATGCTGTTCCTCATCACAATATACCCttgatatcaaaaTATGACGCCACTGATGTTGAGGTCTGCTGTATATGTCTAGCAAGTGATGTTAAAATGTATAGCTCTCAAAGAGGAagcttaaaaataaagattGAGCAAGTGATGTCTTTTAGTgaTAAGTTAGAAACAGAAGGGCTTCCCTGCTTTGTGTGTTACATGTGTGTGATGGAGGTACACAAGTGTTGTCAGTTCATAGACAAGTGTGTCACAGCACAAGCTACATTACTTGATGTGCTTCATAAACATGGAAAGataacaaaaaaaatattaaaaaatgtgaaccgcactcatttaaatttaagtaaacCATTATCCATATTTAAACAATCAAACATAAAAGAATATACATATGAGAATGATAACATAGACAATCTAACAATATTTGATTCAAAATTAAAAGATGAAActgaatttaaaatagaaacaAATGATATAAAAATGGAAAGTGATGAAGAAGTGAAAAGACCAGTGattgatgataataattatagtgATAAAGAAATGATATATGGTGATAGTGATAATGAATCTGTAGACTCATTTTGCAGTGATGATAAAACATtgagcatgttaaagaaagctGTTAATAAGATTAATAAGGAAGAGAAACTGAAACATAAGACCGTAAAAAGAAAACGTAAGACTGACAAACGAGTCACTAAAAATAAGGAATATTTAACAGAACGAGAGATAAAGATGAAAGAACACTTCAATATTGTTAAACTATCATTACAGGAGCAAATAGATGATTGGAACAGTAAGTTCACAAAACCTCCGCTGTCTGGTGACGCAATATATCATTGTGAAATTTGTCCCAAACAGTTCACACATCTCAAAACTTTCCAGACACACCAACGGAGTCACGATCAGaGTCGTGGTAAAGTGGAGTGTTCGGTGTGCAAGGTTCGGTTCAAGAGCGAGGCGACAGCAGATAGACACAGAAGACATACACACGAGAAGAAGTTCCACTGTAAAATATGCTCTAACGTATTTAGTAATGTTCAGACTGCACTAAGACATCATCTACGTCACTCCGGTATAAAGCGATCGGACAAACAAACAGCACAAAAGGAATCGAATGAATATAGTTGTACGCAATGTGGAATCTCAtttaacaataaagaaaaacttaagCTACACACTTTAGACACACATGGAGAGACGGAACCAAAATGTGATGAGTCGTATCATTGTGAGACATGTGATATCAACTTTTCTACACAAGATGCTCTTACACTACACACACAAACTTCTAGCCGACACAAAAGTAAACTAAAAAGCGATAAAACTTTAGATTTGGATGACAGTAAAACATGCTTCAGTTGTGGCAAAGAATTCAGCACAGAAAGCGAACTCACCTTGCATGTCAAAACTGAACATAAAAGAAAATCTTATGTCAACCGACGCGCAGAAACATATCCGACAACTTGTGAACATtgCGGTAAGAGTGTGAACAGCCGCCGTGAATATTGGTGGCACACGATCAAGGAACATCCCGCCGAGAGAGACTCGTATCAACGCGTCATTACCGCTATATGTGACACGTGCGGTAAGGGATTCCAGAATAAAACGTTACTACGTCTCCACGAGTTACGTCACTCGTCTCCGTCAGTGCGGTGCGATGATTGCGGTCGCGCGTTCTACGACAAATACGCTCTGGCGCGACACACTCACAcgcacacgcgcgcacgaccctTCGTCTGTGCACATTGTGGACAGGCGTTCACTATCAGGACCAACCTCAATAGACACGCCAAGGTACATTCAAACGTAGCTAATTACGAATGTTCGATGTGCGGCAAGAAGTTCAAGTACACGACCAGTCGTAACCTTCACATACGCACTGTACATTACAAACAACCTCCTCCGCCTCGTAAGAAGAAAACTAAGGAAGCACCCGAACCTGAATTTAaactgcaataa
- Protein Sequence
- MKYYCCVKGCKNSIKTKKNNAGSIITFHSFPRSPHLRGKWLDAIGRPDWDVPSHAMVCSEHFAYSKLEYGASGTSVEDDAVPHHNIPLISKYDATDVEVCCICLASDVKMYSSQRGSLKIKIEQVMSFSDKLETEGLPCFVCYMCVMEVHKCCQFIDKCVTAQATLLDVLHKHGKITKKILKNVNRTHLNLSKPLSIFKQSNIKEYTYENDNIDNLTIFDSKLKDETEFKIETNDIKMESDEEVKRPVIDDNNYSDKEMIYGDSDNESVDSFCSDDKTLSMLKKAVNKINKEEKLKHKTVKRKRKTDKRVTKNKEYLTEREIKMKEHFNIVKLSLQEQIDDWNSKFTKPPLSGDAIYHCEICPKQFTHLKTFQTHQRSHDQSRGKVECSVCKVRFKSEATADRHRRHTHEKKFHCKICSNVFSNVQTALRHHLRHSGIKRSDKQTAQKESNEYSCTQCGISFNNKEKLKLHTLDTHGETEPKCDESYHCETCDINFSTQDALTLHTQTSSRHKSKLKSDKTLDLDDSKTCFSCGKEFSTESELTLHVKTEHKRKSYVNRRAETYPTTCEHCGKSVNSRREYWWHTIKEHPAERDSYQRVITAICDTCGKGFQNKTLLRLHELRHSSPSVRCDDCGRAFYDKYALARHTHTHTRARPFVCAHCGQAFTIRTNLNRHAKVHSNVANYECSMCGKKFKYTTSRNLHIRTVHYKQPPPPRKKKTKEAPEPEFKLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01490196;
- 90% Identity
- iTF_01490196;
- 80% Identity
- iTF_01490196;