Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028268.1:1326816-1336376[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0035 0.29 12.3 2.5 1 23 226 249 226 249 0.95

2 11 0.00044 0.037 15.1 1.8 1 23 255 277 255 277 0.97

3 11 0.35 29 6.0 4.2 1 23 281 304 281 308 0.87

4 11 0.015 1.2 10.4 0.8 1 23 311 335 311 335 0.99

5 11 0.032 2.7 9.3 0.0 2 23 339 361 338 361 0.95

6 11 0.0011 0.091 13.9 4.2 1 23 367 390 367 390 0.96

7 11 0.0058 0.48 11.6 1.3 1 23 402 424 402 424 0.93

8 11 4.9e-06 0.00041 21.3 1.2 1 23 432 455 432 455 0.98

9 11 0.00021 0.018 16.1 0.9 1 23 462 485 462 485 0.97

10 11 0.00081 0.068 14.3 3.4 3 23 496 516 495 516 0.98

11 11 5.5e-07 4.6e-05 24.3 0.6 1 23 522 545 522 545 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0035	0.29	12.3	2.5	1	23	226	249	226	249	0.95
2	11	0.00044	0.037	15.1	1.8	1	23	255	277	255	277	0.97
3	11	0.35	29	6.0	4.2	1	23	281	304	281	308	0.87
4	11	0.015	1.2	10.4	0.8	1	23	311	335	311	335	0.99
5	11	0.032	2.7	9.3	0.0	2	23	339	361	338	361	0.95
6	11	0.0011	0.091	13.9	4.2	1	23	367	390	367	390	0.96
7	11	0.0058	0.48	11.6	1.3	1	23	402	424	402	424	0.93
8	11	4.9e-06	0.00041	21.3	1.2	1	23	432	455	432	455	0.98
9	11	0.00021	0.018	16.1	0.9	1	23	462	485	462	485	0.97
10	11	0.00081	0.068	14.3	3.4	3	23	496	516	495	516	0.98
11	11	5.5e-07	4.6e-05	24.3	0.6	1	23	522	545	522	545	0.97

Sequence Information

Coding Sequence: atgacACAAGTTCCTAATATTTATGTGAAAAATCTAGTATTTACAGTTAGAGCAGGCGGATCTCTTACACCGGTGACAACATCTTGTTTCTGTTGCCGCTCAAAAGATAAAAGTTTAGTTCGTCTATCGACATGCAAACACAAAACATTtctcgaaaattattttagaggCAATTTAAGCATCTACAACAAGTTTATATGTACATCATGTCACATCATACTCAAGAAAATAAATTGGTTTGTCAATCAAATTATACTGAGCTCCACAAATTCTGAGAagATTCTAAAAAGATCAATTTTGACCTGTAAAAAGACTAGCACAGAATACATTTTGCTAAAACATGATTACAAAGAGACCGAACTTGGACCATTTGAACAAGAAGACAGCCTAGACGGTATTGTTGATCCCGATGATGCGAACCAGAAACAAAACTATACAGACAATGATAAAATTACGGAAGTTGTTAAAACTCTCAAGTCAGAGATAGTACCTGTGGAACACACAAACAATGTAGTATTTGTGCCCGATGATGTTAAGCCTGAAGctacacaattaaaaaatgacGACGACACGACCATTACGTACACAAGACTACAAGAGATACATCTGTCTCACTCAGATTTAATAGCGGAGAGAGAGAAAGCTGCAAAAGACGAAACATATTTAAGTCGGAGTTTTAAATGCGAAAAATGCATAGTTTCCTTTGTTCACGCAAAGAATTTGACAAGGCACAAAACCGTGTACCATAATGAGAAAAATCCGTTTATATGCGATATATGCTCGACGACTTTCAACAGCCAAACAAAACTCGATACACACAGAAAGAATCATTATTTTAGGTACAAATGTTTAGATTGTAATAAATGTTGGAACAGTAAATCTTATGCTAAAACGCACTGGCTAGATAAACACGAAAAAAATCATGATGTATACAAGTGTGACGATTCGGACTGCGAATACGAAACTGGATCAAGAGTTAGTTATCAAAATCACAAGCGAACACACAATAAAGTAGAATGTCCAGTATGTCTGAAAATTTTCAGTAAAGGATGGCCATTGGAAACTCATATAAAtCAAGTCCACAATAAAAGTACTCTATTCAAATGCAAAGATTGCGAAAAGTCGTACAAATGTCGTTACAACCTGAAGTCCCACGTGGCGAAGGCGCACGGCCCACAATTGGACATCGAGCCATCCCAATCCCACTATTGCGCGCCTTGCGGACGGGACTTCAAAACACAATACATACTGGCGCGACATTTGAAGACTCATCCGGCACATGTGGCCAAAAAgTACGAATGCGACGTATGCTCAAAGAAGTTTTCCATCAAGTCTTATTTGAAAGAGCACATAATGACGAAACATATGGATTTGAAAACTAAGCACAAATGCCCGCAGTGTGAtaagGAACTGGTAACATTGGTTTTAATGAAACGACACATAAAAAGAGTACATGAAAAAAAGGAGAAACCGCGCGATAAAATATGTGAACACTGCGGCCGAGGATTCTCGACAAATTTAATTCTGAAACATCATTTACGCACACACACTGGCGAGCGACCGTACGTATGTAAAACTTGCGGGACCGCCTTCAAACAAAACAGCACTCTTAACACGCACATCAAATTAGTGCACGGAGTTAAACGGAAACAAGAAACGAAATAA
Protein Sequence: MTQVPNIYVKNLVFTVRAGGSLTPVTTSCFCCRSKDKSLVRLSTCKHKTFLENYFRGNLSIYNKFICTSCHIILKKINWFVNQIILSSTNSEKILKRSILTCKKTSTEYILLKHDYKETELGPFEQEDSLDGIVDPDDANQKQNYTDNDKITEVVKTLKSEIVPVEHTNNVVFVPDDVKPEATQLKNDDDTTITYTRLQEIHLSHSDLIAEREKAAKDETYLSRSFKCEKCIVSFVHAKNLTRHKTVYHNEKNPFICDICSTTFNSQTKLDTHRKNHYFRYKCLDCNKCWNSKSYAKTHWLDKHEKNHDVYKCDDSDCEYETGSRVSYQNHKRTHNKVECPVCLKIFSKGWPLETHINQVHNKSTLFKCKDCEKSYKCRYNLKSHVAKAHGPQLDIEPSQSHYCAPCGRDFKTQYILARHLKTHPAHVAKKYECDVCSKKFSIKSYLKEHIMTKHMDLKTKHKCPQCDKELVTLVLMKRHIKRVHEKKEKPRDKICEHCGRGFSTNLILKHHLRTHTGERPYVCKTCGTAFKQNSTLNTHIKLVHGVKRKQETK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -