Tvar006780.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028263.1:8546166-8548801[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.4e-05 0.0011 19.9 2.1 1 23 226 248 226 248 0.98 2 11 0.095 7.9 7.8 6.5 1 23 254 277 254 277 0.96 3 11 2.8e-05 0.0023 18.9 0.5 2 23 288 309 287 309 0.95 4 11 0.0012 0.1 13.7 1.4 2 23 317 338 316 338 0.91 5 11 0.058 4.8 8.5 3.4 1 23 345 367 345 367 0.98 6 11 0.0023 0.2 12.9 2.5 1 23 373 396 373 396 0.95 7 11 0.0047 0.39 11.9 1.8 2 23 402 421 401 421 0.97 8 11 6.8e-07 5.7e-05 24.0 3.7 1 23 427 449 427 449 0.98 9 11 4.2e-05 0.0035 18.3 1.7 1 23 455 477 455 477 0.99 10 11 3.1e-05 0.0026 18.8 0.5 1 23 483 506 483 506 0.97 11 11 0.00017 0.014 16.4 0.9 1 22 512 533 512 533 0.95
Sequence Information
- Coding Sequence
- ATGGCTAACGTTAAGGGTAGAGTAAAGGCACAAAAAGGTGCAAGTAatcaaagtaaaagtaaaaaaaagtcGTTGACAGGTCATGAAAATTCGGTGAGAAAACGCAGCTCCAAAAATAAAGATGTCGAAGAGATTGTTATATCTTACAAAGAACTAGCAACTGGCAAGTACACTGTGaatgatccaaaaaataaaaataaaactagagAGAAAAATAAGTCCGGTAAAGACAATATTGTCATGAAAAGGCCGAGTGACATAAAACTGCTTACAACACAAGAGAGAGTCCAATGTTTACTTCAACATGGTCATTTATTCAAGGACAAATTTCCAGTGAGACCTCCTGGGAAATATGTTCCCAGCAAAAAGAGACTGATTGCCAAAGCTGCTAAAATAAGACCCCCAGAAAAGGATAGACTTATATCTAAAAGTGGAAGAATAAAGAAGAAGAACAAACCTGATATACAACTTTTAGATAACATACTGAAGAGtgaattacttatttttgatAACACAGACAAAGAAATTATGTcagaaaaatcaaaacaaatcaggaaaaaaaaaaccaaatcctcaaacaataacaatgaaaatattAGTGATCAAAACGGTGATCTAGCAACAGAATCTATCATAAAACCTGAATCACAAAGCCAAAGTGACACTGGTTGCCTTTATCAGTGTGATTACTGCCAGAAATGGTTTACCAGTAAATATTCTTTACAGAGACACATTTATATCCATCTTGATTGGCCTCGATACAATTGTCCTCACTGTCGTAGACAATTTTTTCACAAGGAAGATAGGAAAGTCCACATTTTTAGATATCACAACAATCTGATTAATGAAATTGACAAATCTGTATGTAAAAAATGTGACAAAGTGTTCACCGATGAAGAAAGTCTTTTTGTCCATAGATCAGAACACAATAACATAGAGAATTCTTATGACTGTATCTTTTGCACTAAGAAATTTTCAACTCAGGCATTATTGATTAAACATGAGAAGAAACACTTACCTGAGAATGGTAAATATCAGTGTACAGTCTGCAATGTGACTTACAATTGCCGCACAAAACTAGAAAATCATGTGAAAAGTCATTTGCAAATTAAAGAATATGTCTGTCAGTACTGTGGTAAAGACTTTTTGAGGAGTAACTCGATGAGACGACATGTGTCGATCTGTCATAGTGGTCACAGAATACAGTGTCCTATTTGCAAAAAGAATTTAAAGGGCCACTTGACTGAGCATATGAGGACTCATGAGAAACGCCGGCCTCATGAATGTCCTGAGTGTGGTCAGTGCTTTACTCAGTCCACTCAACTGAATGTTCACCGCCGGTCCCACTCTGGTGCTCGGCCCTATGAGTGCAGAATCTGTGCTCGGAAATTTTCTCATTCAAATGCTCTTATGCTTCACATTCGAAGACACACAGGGGAGAAACCTTTTCCCTGTGCTGTGTGCCCGTTGTCTTTCTCCCAGCTTCCTCACATGAAATCGCACATGCGCAAAATTCATGGCAAAGAAAATCCGTACAAATGTCCCAAATGTAATCAGTTTTTCAAGTTGAAGGTGCAGCTTGAGAACCATGCTAAAACATGCAAGGTCACCAACAAAAATTCGGCGCCCAAGCAAACTGCCCCGACCTCCTCTCAGAACGAAGAAATCGATGTCGAGTCAGTGCTGAGGCTGTCACGAATGAGGTTTCTACTCGCCCTACTCTTCTCTATGATTTTATCCAAAGAGAGACTCAAGTTTTTAGGTTTCAACAAACGTCTAATTGACGATCTTCTTGTGGATTCTTTGGAAGCCATGGGCAATGGTACTTGCACAGATCAGACCATGACTCCGTTAGACCGCCTCAAAACTAACATTGAGCTGCTTCTGAAACATACGGTCGATAAGGCGCAGTTGGAAAAATTCAAAGGGGAAAGTAAGACTCTGGAAGAACTTCTAGAAATTCTGACAGATGATAAAAAGAAGAAGGAGTAA
- Protein Sequence
- MANVKGRVKAQKGASNQSKSKKKSLTGHENSVRKRSSKNKDVEEIVISYKELATGKYTVNDPKNKNKTREKNKSGKDNIVMKRPSDIKLLTTQERVQCLLQHGHLFKDKFPVRPPGKYVPSKKRLIAKAAKIRPPEKDRLISKSGRIKKKNKPDIQLLDNILKSELLIFDNTDKEIMSEKSKQIRKKKTKSSNNNNENISDQNGDLATESIIKPESQSQSDTGCLYQCDYCQKWFTSKYSLQRHIYIHLDWPRYNCPHCRRQFFHKEDRKVHIFRYHNNLINEIDKSVCKKCDKVFTDEESLFVHRSEHNNIENSYDCIFCTKKFSTQALLIKHEKKHLPENGKYQCTVCNVTYNCRTKLENHVKSHLQIKEYVCQYCGKDFLRSNSMRRHVSICHSGHRIQCPICKKNLKGHLTEHMRTHEKRRPHECPECGQCFTQSTQLNVHRRSHSGARPYECRICARKFSHSNALMLHIRRHTGEKPFPCAVCPLSFSQLPHMKSHMRKIHGKENPYKCPKCNQFFKLKVQLENHAKTCKVTNKNSAPKQTAPTSSQNEEIDVESVLRLSRMRFLLALLFSMILSKERLKFLGFNKRLIDDLLVDSLEAMGNGTCTDQTMTPLDRLKTNIELLLKHTVDKAQLEKFKGESKTLEELLEILTDDKKKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -