Tvar010262.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028267.1:11296271-11303108[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 9.8e-05 0.0081 17.2 3.6 1 23 202 224 202 224 0.98 2 29 0.0034 0.28 12.3 2.6 2 20 250 268 249 270 0.92 3 29 0.00098 0.082 14.0 0.3 3 23 294 315 292 315 0.96 4 29 6.8 5.6e+02 2.0 0.0 2 20 338 356 337 358 0.86 5 29 0.0021 0.18 13.0 2.5 1 23 368 391 368 391 0.98 6 29 0.017 1.4 10.1 0.3 1 23 404 426 404 426 0.97 7 29 0.0082 0.68 11.1 2.4 2 23 457 478 456 478 0.97 8 29 7.5e-05 0.0062 17.6 3.7 1 23 520 543 520 543 0.98 9 29 0.00079 0.065 14.4 1.5 1 23 593 616 593 616 0.97 10 29 0.0028 0.23 12.6 0.7 1 23 676 698 676 698 0.97 11 29 0.0034 0.29 12.3 4.8 2 23 710 731 709 731 0.96 12 29 0.13 11 7.3 2.4 2 23 743 764 742 764 0.96 13 29 0.0081 0.68 11.2 3.6 1 23 774 796 774 796 0.98 14 29 0.0052 0.44 11.8 4.2 1 23 830 852 830 852 0.94 15 29 3.7e-05 0.0031 18.5 0.3 1 23 863 885 863 885 0.99 16 29 0.0011 0.089 13.9 2.2 1 23 893 915 893 915 0.98 17 29 1 84 4.6 0.3 2 23 935 956 934 956 0.90 18 29 0.026 2.2 9.6 2.1 1 23 974 996 974 996 0.95 19 29 0.15 13 7.1 5.0 1 23 1003 1025 1003 1025 0.98 20 29 0.019 1.6 10.0 1.7 2 23 1036 1058 1035 1058 0.95 21 29 0.0028 0.23 12.6 0.3 2 23 1081 1102 1080 1102 0.95 22 29 4.3 3.6e+02 2.6 0.2 2 20 1106 1124 1105 1125 0.91 23 29 0.0076 0.63 11.3 0.3 2 23 1183 1204 1182 1204 0.96 24 29 3.2 2.6e+02 3.0 4.4 5 23 1214 1232 1211 1232 0.94 25 29 0.0042 0.35 12.1 0.9 2 23 1243 1265 1242 1265 0.96 26 29 0.95 79 4.7 6.1 2 23 1282 1300 1282 1300 0.89 27 29 0.76 63 5.0 2.2 2 23 1371 1392 1370 1392 0.94 28 29 0.003 0.25 12.5 0.5 2 23 1403 1425 1402 1425 0.95 29 29 6.9 5.8e+02 1.9 3.0 2 19 1463 1480 1462 1482 0.88
Sequence Information
- Coding Sequence
- ATGGCTCTAAAACTTGGTAAATGTAGGCTCTGCCTGAAGCTGGGGGACTTCTACTCCATTTTCACGGTGGACAATGCCGTGCAACTGGCCGAGATGGTGATGGAATGCTCCCGAATAAAGatCTACGAAGGAGATGGTTTACCAGATAAAATTTGTTCAGAATGCATCCAGAAACTTAGCAGTGCCTATATATTCAAGCAACAATGTGAGAGATCCGATCAAGAGTTGAGAAGGAACTATGTACCACCGCCAGgaTTTAGTGTAAGTCCTGCACCAACAAGCCGCCAAAGCAATGATTCTGCTATTTCGTCACAAACTGAAAATtcgaacacaaataaaaattcGTCATCAGAAGAGAAGCCAACTCCTACACAGCGCTCTCGAAAACGGAGCATTGATAGCGATAATGCGTCCACAAGCAGTCTTCCTAAGTACCAAACTGGTAATTCGAAACGTGTGGAGGAACTTCGAAGAACAAGCAAGAGAGCCAGGGTTCCACCTAAATTGTTTCAAGTAGATTCCGACTGCGATGATGTCGCCTCCTCATTTTCTTACGCTGACAGCTGCGGAACGGACTCCGATGAGTCTACCATTAGAAGCAAATACAGCTGCCACATTTGCAAGAAAGAGTTTAAATCGCTCCAGAGCCTCAACAATCATAATCGGATTCACAAAATGGAGAGTGTTAAAACTCAACCAGAAACACCGACTAAAGAAACGAATCATATAAAAGACGAGGAACCGCTCAATTGCCAAAAGTGTGGAAAAACTTTCAAGTTGAAAATAATGTTGAAACGTCATAAGTGCGAGAATACTCTGACGAAGCAACTTCTCATCTCTCTGCAACCGATAGACGGAAAGCAATTCATAAACATGAATTGCGAGTTGTGTTCTGCGAAGTTTAGGAGCATTGAGAATTTAGAGAATCACATGAAGGTGACTCACGCGGTCCCAGCAGTTTCTAAACCAAGTGTGCCGGAGCAGGAAGAAAAACCTGAGGAAATCGCTGTCCCGTGCCTTTTTTGCGGAGAAATCTTCGACGACTACCCTTTGTACTATTCCCATTTCAACAGTTGCGATCAAAAGGTTGATCTACACTCTTTTCAATGTTCCCTTTGTAGTAAAACAACGTCGACTAAAACTGGTTACTTCTTGCACGTGAGGACGACACACTTCAAGTACTATCATGCAGATTCTCGTATGTCGATGCACCAATGTCGTTTCTGCAGCAAAATGCTTCCAACAGAAGCTTCATTAATAGCCCATTTGGCTAGTCACGTGACAAACAAAGATAAGACCGACCAAGCTAAACCGagCACCCCGAACTCTCAAAATCGAGATTCACCATTACCCAAAGGTGAGCCGTTGAAATGCAGCTTTTGTGATAAAACCTTCCTGTATAAAAAGTCGTTGGAAAATCACGAACAGAGACACGAAAACGGTAGTCTGCCGATCAAGTCAGAGGACATGGCGGACGAGGGTCACAATAATACGAGTCTACTCAGCGAGACTCACCAGCCTTCCGAATCAGAGTCTAGTCAGGACGAAACATACGACTATACCTGTGATATATGCGATAAACAGTTCTCATACAAGAAACAATACATACAACACAAGAAGACGAAGCATACAATGTGTGCTGGCGTAAAAAGATCCAAGATCACATTAAAAGACTGCATGGTATACTGTCGGATATGTGATCTGCAAATGAAAGTGAGCGAAGTGAAAGAACACAACCAAAAACATATATTACAGAATATCAATCCCAGGAATATTTACAGCTGTAATGAATGCGAAGAGAAATTCAAGAGCTGCAAGGGTCTTGCTGATCACATAAAATATGTACACAGGTTAAAACAGGCACCTCCACCGAAAGTATCGAATCCGATGACGTTCGAGGGCCCAGACCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAACGGAACCCCTGGATCGGATCCAGTCTCACAACGGCTACAGCGAGGTTCCGATCGTCGACGGATACAGCGACCAACAACCAGGCTTCCCTTGCCACGTCTGCGACAAGAGGATGCCGACACTACTCTCTCTCAAACGACACATCAACTGGCATTCATTCGTCGGGAACAATCTGGAGAAGCAAATCGAATGCTTCGTATGCAAACAGGTATTCCGATTTCAATGTCACTACAAAGCTCACATGCGCGAACATTACCGGGACCCCAACATCGACCCCCAGTTACTGACCTGCACCATCTGTAACCGCAAGAGTAAACATCTGCGAGCCGCGCAGATGCACATGAACTACCACAAACAAACGCGCTTCCAGAACAAAGACTATCAGTGTTCCATATGCAAAAGGGTGTTTCAGCACAAGAAAGTGTACTTATATCATATGTCCGTACATCAGAGGAAGGGCGAGAGTGGTCACAACACTATAGTGGGCATGCACGGAATCGCGAACGCAGGACAACTCAATACAGATAAACCCATCGACGACGGCTCTCACACTTGTCAGATCTGCGGCAAGGTCTGCGAGTCTGAAACCTCTCTCAAACATCACACGGTGTGGCACAACTCTAAGACACTACTGTATGGTGCCCGCTACGAGTGTCCCGTCTGCACGATACAGTTCACTAACAAACGATACCTCGCCATACACGAGCGGACTCACTATGAAGATGAAAACGGGCCCTTCAAATGCAAAGTGTGCGGCAAAGGATTCATCGACGAAGAGTACCACCGCAGACACCAAATGTCGCACAATTTCAGCCACTCCTCACACAAAAAACGTATAGAAAATATGAGGAAGGGGAAGATCAAATGTCCGTACTGTCCGCGCTACATGGACTCCGTGAAGCTCTTCCGACATTTGAAGGCCTCGCACCCGGACAGTAAGATGATAAAAACGGAGCCCGAGCCGGTGCCGCAGAGGCAGTACTCGTGCAAGCTGTGCGCCAAACAGTTCCGAGACGAGAAGAGACTGCAACACCACGAGTTGGCGCATCTCAGGAAACCGGAATTCTTCAAGTGCAAATTCTGCGGCAAGAAAACTATATCGCTGAAGAATCACAGGCTTCATATCAAATCGCATTTGACGGCCAAGCATACGGATTCTCCCTTGAAATGTACGCGGTGTGAGGAGACTTTTGTAAGAGGATACGACTTGCATTATCATTTGAGGGATACGCACGGTATTCAAGAGACTTGGATAGCCGAACGAACTGAACCAGTCCTGGACGGTCCGCTCAACCATCTCCAGTGTTCCGTTTGCCTCAAGACGCTCGCATCTAAAGGAAATTTCGAACGACACATAGACTACCACAACTCCCTTCGATGCAACTACTGCTTTGACTATTTCACTACGCCGCGGTTCCTCGAAGGCCACTTGGCTTTCAGTTGCGAAAAAAAGAAACTCGTAGGGGACACAGAAATATACCCAAAGAAATTAAAGTGCGAAGTCTGCTACAAAGCCTTCCATTTGCAAGTGAAACTGGATTGCCACTTGCGAGCGCAGCATAACATGAAGGTGTCCAAGCAAGCGACATTCGGTAGAAAACAAATCGTATGCGACTTCTGTTTCAAGGTATTCATAAATGAAGATGTTTTGTCTTCGCATCAAAAGTATCATCGTGCCGTAGGATACTATGGTTGTATTTATTGTAAGAGAAAATTCAACACTGTCACTACGTATAGGAAACACAAGAACCATCACTTGAGTCAAAAGAATTTCGACAATCCGACGAAATGTGAACATTGTGATGAGACATTTGTAGCTTTTAGAGATATGATAACCCACATGAAAATCGAACATGGAGACAGCAAGGAATGGATAGTTATGCCAAAAGACTCGGTACAAGAGAAATGTCACATCTGTGATAAAACATTCTTCAATTTGCACAGACATTTGGACTATCACGAAGAAAACAAATGCAAGAAATGCGGCGATTATTTCTTTTCCGAAGTCGATTTTGATAGTCACTTGTGTAGTATCGAGAGTGATGATGAAGGAACGGGCTATGTTACCGCTGAGTTCATTTATGAAGAATGCCGGTTCTGCTTCAAGCCAATCACCAAAGCACACACTAAGAAAGTACATGATAACCTTCATAAAACATCCGGGGCAATCTCCTGCCGTTTCTGCACGTTTAAATTCAAAACTATGGAGTCGTTTAGAGTCCATGCGTTTTCACATCGAAGCCGAAAATACAATAAACATCCTATAAAATGTCGAAAGTGCGGTGAAAAGTTCGTCAAATATGGACCCTTTATGAGGCATATGAAAGGTGTTCACAAATCTACGAAGAAGGTCCACTACAGAGCTAGGATCAAACCTGAAAAGTGCGTCGTATGCGGAGACGAGTTCCCGAACCTACACAATCACTACCGAGCTCATCTCCTCAACCAATGTCAATTgtgcaaaaagtattttacctCATTCAAAGTTTTCGCGAACCACGAATGCGACCAAGAAGATTCTGATCCCAGCAAAGTGTTCACCAGTGACGCGAATCTCGACTTCCTGATAAAGACTTACGTACCTAAAGACGATAAAGATGACGAGAAATTCTACGGGTACTCCGACAATGAGGAAGGAAATAATGAAGAGAGTTTTGAGAAGAGGGAGTCTGTAGACCGGTCTCTCGTCATATCTGATGTATTGTCCCTGTTTAAAACAGAGGAAGTCCAGAACCAGGATAGTGATACTCCCGCTGAGGACCTTAAAAGCCAAGATGGCGATAGTTTAGGTGACGCAAAAAGTCAAGATGAAGAAAGCCAACATGATGATAACGTTGTGAATCTCACTGATGATGAACTAGTGGAAGTTGATAGTCAAGTACCTATTATCATACTTGATGATGACTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMECSRIKIYEGDGLPDKICSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSVSPAPTSRQSNDSAISSQTENSNTNKNSSSEEKPTPTQRSRKRSIDSDNASTSSLPKYQTGNSKRVEELRRTSKRARVPPKLFQVDSDCDDVASSFSYADSCGTDSDESTIRSKYSCHICKKEFKSLQSLNNHNRIHKMESVKTQPETPTKETNHIKDEEPLNCQKCGKTFKLKIMLKRHKCENTLTKQLLISLQPIDGKQFINMNCELCSAKFRSIENLENHMKVTHAVPAVSKPSVPEQEEKPEEIAVPCLFCGEIFDDYPLYYSHFNSCDQKVDLHSFQCSLCSKTTSTKTGYFLHVRTTHFKYYHADSRMSMHQCRFCSKMLPTEASLIAHLASHVTNKDKTDQAKPSTPNSQNRDSPLPKGEPLKCSFCDKTFLYKKSLENHEQRHENGSLPIKSEDMADEGHNNTSLLSETHQPSESESSQDETYDYTCDICDKQFSYKKQYIQHKKTKHTMCAGVKRSKITLKDCMVYCRICDLQMKVSEVKEHNQKHILQNINPRNIYSCNECEEKFKSCKGLADHIKYVHRLKQAPPPKVSNPMTFEGPDLADFCEVVVTKTEPLDRIQSHNGYSEVPIVDGYSDQQPGFPCHVCDKRMPTLLSLKRHINWHSFVGNNLEKQIECFVCKQVFRFQCHYKAHMREHYRDPNIDPQLLTCTICNRKSKHLRAAQMHMNYHKQTRFQNKDYQCSICKRVFQHKKVYLYHMSVHQRKGESGHNTIVGMHGIANAGQLNTDKPIDDGSHTCQICGKVCESETSLKHHTVWHNSKTLLYGARYECPVCTIQFTNKRYLAIHERTHYEDENGPFKCKVCGKGFIDEEYHRRHQMSHNFSHSSHKKRIENMRKGKIKCPYCPRYMDSVKLFRHLKASHPDSKMIKTEPEPVPQRQYSCKLCAKQFRDEKRLQHHELAHLRKPEFFKCKFCGKKTISLKNHRLHIKSHLTAKHTDSPLKCTRCEETFVRGYDLHYHLRDTHGIQETWIAERTEPVLDGPLNHLQCSVCLKTLASKGNFERHIDYHNSLRCNYCFDYFTTPRFLEGHLAFSCEKKKLVGDTEIYPKKLKCEVCYKAFHLQVKLDCHLRAQHNMKVSKQATFGRKQIVCDFCFKVFINEDVLSSHQKYHRAVGYYGCIYCKRKFNTVTTYRKHKNHHLSQKNFDNPTKCEHCDETFVAFRDMITHMKIEHGDSKEWIVMPKDSVQEKCHICDKTFFNLHRHLDYHEENKCKKCGDYFFSEVDFDSHLCSIESDDEGTGYVTAEFIYEECRFCFKPITKAHTKKVHDNLHKTSGAISCRFCTFKFKTMESFRVHAFSHRSRKYNKHPIKCRKCGEKFVKYGPFMRHMKGVHKSTKKVHYRARIKPEKCVVCGDEFPNLHNHYRAHLLNQCQLCKKYFTSFKVFANHECDQEDSDPSKVFTSDANLDFLIKTYVPKDDKDDEKFYGYSDNEEGNNEESFEKRESVDRSLVISDVLSLFKTEEVQNQDSDTPAEDLKSQDGDSLGDAKSQDEESQHDDNVVNLTDDELVEVDSQVPIIILDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -