Tvar014798.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028273.1:499422-502963[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0099 0.82 10.9 6.4 1 23 230 252 230 252 0.98 2 15 0.056 4.7 8.5 0.6 6 23 263 281 263 281 0.95 3 15 0.67 56 5.1 0.5 2 23 289 311 289 311 0.93 4 15 1.1e-06 9.5e-05 23.3 1.0 2 23 334 355 334 355 0.97 5 15 9.5e-06 0.00079 20.4 0.5 1 23 362 385 362 385 0.95 6 15 1.1 89 4.5 0.2 1 23 391 413 391 413 0.92 7 15 2.5e-05 0.0021 19.1 0.7 1 23 419 441 419 441 0.98 8 15 0.97 81 4.6 0.7 1 13 447 459 447 462 0.89 9 15 0.1 8.4 7.7 3.5 1 23 593 615 593 615 0.98 10 15 0.0022 0.18 13.0 3.0 2 23 622 644 621 644 0.92 11 15 1.3e-05 0.0011 20.0 0.2 3 23 652 672 651 672 0.98 12 15 6.9e-06 0.00057 20.8 1.0 1 23 678 700 678 700 0.99 13 15 8.7e-05 0.0072 17.4 3.8 1 23 706 728 706 728 0.96 14 15 0.0029 0.24 12.6 3.2 1 23 734 756 734 756 0.93 15 15 0.00039 0.032 15.3 2.7 1 23 762 784 762 785 0.94
Sequence Information
- Coding Sequence
- ATGTCGAATTTAGAAGAAAACCAGATTGTAGAATACGAATATGAAAATACTATGGAAAAAGattactCAAATTTAGGAACCCTATGCAGAACATGCGGTCGGACCTCAGATTACCTCATACCTATATTTAGTGAGGATGGTTTGAGAAATAATTTAGCCGAGCTGATTAATAAACACCTTCCTATAACGGTATCCCCTAATGACGAGATGCCGCACGTGTTATGTAATAAATGTGTGAACACCATCACCGAGTGGGATGAACTGAAACAACTATGTTTGTATGCCGATGCCACACTGAGGCAACACATTGGAACAAATGAGgtTCCGGAAACAAATCAAATTGAAGAAAATGAGATATTTATTATAGAAACTTTCAACGAAAATGTAAAGACTGATCTCAGTGTTGGATGTTATGAGAAAATTGAAAAGGCTTTGAATGACTATTTGAATGAACTAAATATAGTAATTTCTGGGGATATGGAATTTTCTTGTTTAAAGTGTGAAAAAGAGCATTCTAGAATGTCTTTACAAATATTAACTGAACATTTGAGTACCACACATTACTCAGAAAGTGACAATTTCAACACGTTCATTAGGGAGTACATTGTTTTTGAGGAAACTTTGGCTTCAGCTCCAGAAGACAATAGGAATGAATCTTCAAATTCTGATGATGAAGTGTCTCTGAACTACAACTGTTCTTACTGTCATTGTAAATTCTCTTCTGTGTCGCGACTAACTTTACATTTAAACAGTCACAAAAAAACTTCTTTAAACGGAATTATATGCTGCAAGAGATATTATAAAGATAAGAATTCCCTACAGAAACATTTAAAGGAGGAACATGTTAGTTATTTAGAGAAGGGTACGTGCAGGTCATGCGACTTTAGAACTGACAATGAAGAAACCTTACAGTTACATATTATCGAAAAACATGACATCAAAACTGATCGAAAGCCCAAACCGCCCCCGAGTGCAAAGAGCCAGAAATATATCCCGGCGGTCTGTCCCGAATGCAACAAGACGTTCTCCAACAAGTACAACATGTTCGTTCACCTGCAGCGTCACACGGACACGGACGCGCGGCACCGATGCGACGCGTGCGGCAAGACCTACCGCAGCCGCAGCAACCTCGCCGCGCACGCCCGTCTCGCGCACCGCGGCCTCCTCACACACGCCTGTCCGCGCTGCGCCGAGCGCTTCCCCACGCGCACTGCACGCGACGTGCACGCCGCCACGCACGCCCGCGACCCGCCCTACCGCTGCACCTACTGCGGGAAGGCGTACCGAGCCAAGAACACCCTCGACCGACACATCGACATGCACAACAACGTCAGGAAATATGAATGCGAAATATGCTCGAAAAAATCCTCCCGCCCGCAGTTTTATTCGTGCAATGCAGAATTTAACGGAGACTCTGCGGATGCGGGAGGCGACCGAGACACTGCCTCTGATGAAGAGGACGAACCCTTGTCGGCGTTGGCTTCCAAGAAGAGTTCCAACCTCTACGACACCTTCTACCGAGCTCTCGTCAACTTTAGAGATCATTTCGCTTCAGAACATCGAACAAAATCCTTGCGCTCCGGCCTCACGGACTCTGAAGATTCAGAACTATCTGCTGATTCCAACGAATCAATGTCAGAGATTTCTCCGTCTGAACCTCGCGACGTCGACAAGTATGACGACTTGACAGAACAGAACAGACGGAAGAACCACTTGGACGAACAGACGCGCGATGAACTCAATCAAGCGCGAAGGAAAATCGACGGGAAAGTATTCTACACGTGTTCGATATGCGAGAAGAACCTGAGCTCGCGGCACACGTACCTGTTCCACCAGCGCATCCACACCGGCGAGCGACCCTGCGTGTGTCACCTCTGCGGCAAGCAGTTCCGCGCGCCGCccggcctccgccgccacctcGCGCACACGCACGAGCGGCGCCGCCCCCGCGCCTGCCCCCTGtgcgcgcgcgccttcgcctcGCAGCAGAACCTCCGCCAGCACCTCCGCACGCACACCGGCGAGCGACCCTACGTCTGTCCGCTCTGCAACAAGCGCTTCACGCAGGGCGGCTCGCTCCACGTGCACCTGCGCTCGCACGGCTCCGCGGCCCCGCACCGCTGTGTCGACTGCGGCAAGCGCTTCAAGCTGCGCGCCAACCTCGCCCGCCATCGCCTGCACCACACCGGCGAGCGCCCGCACGCCTGTCCGCACTGCGCGCGCCGCTTCGCGCACCGACACGAGCTCGCCGCGCACCGCGCCGCGCACCTCTCCGTCGCGCCCCACGCCTGCACGCGCTGCGGGGCCGCCTTCAAGCAGCGACGCGCGCTCCGGGACCACGCCAGGAGACATCACCCCGCCGcactataa
- Protein Sequence
- MSNLEENQIVEYEYENTMEKDYSNLGTLCRTCGRTSDYLIPIFSEDGLRNNLAELINKHLPITVSPNDEMPHVLCNKCVNTITEWDELKQLCLYADATLRQHIGTNEVPETNQIEENEIFIIETFNENVKTDLSVGCYEKIEKALNDYLNELNIVISGDMEFSCLKCEKEHSRMSLQILTEHLSTTHYSESDNFNTFIREYIVFEETLASAPEDNRNESSNSDDEVSLNYNCSYCHCKFSSVSRLTLHLNSHKKTSLNGIICCKRYYKDKNSLQKHLKEEHVSYLEKGTCRSCDFRTDNEETLQLHIIEKHDIKTDRKPKPPPSAKSQKYIPAVCPECNKTFSNKYNMFVHLQRHTDTDARHRCDACGKTYRSRSNLAAHARLAHRGLLTHACPRCAERFPTRTARDVHAATHARDPPYRCTYCGKAYRAKNTLDRHIDMHNNVRKYECEICSKKSSRPQFYSCNAEFNGDSADAGGDRDTASDEEDEPLSALASKKSSNLYDTFYRALVNFRDHFASEHRTKSLRSGLTDSEDSELSADSNESMSEISPSEPRDVDKYDDLTEQNRRKNHLDEQTRDELNQARRKIDGKVFYTCSICEKNLSSRHTYLFHQRIHTGERPCVCHLCGKQFRAPPGLRRHLAHTHERRRPRACPLCARAFASQQNLRQHLRTHTGERPYVCPLCNKRFTQGGSLHVHLRSHGSAAPHRCVDCGKRFKLRANLARHRLHHTGERPHACPHCARRFAHRHELAAHRAAHLSVAPHACTRCGAAFKQRRALRDHARRHHPAAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -