Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028260.1:9408875-9417345[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.2 99 4.3 0.6 1 23 80 103 80 103 0.93

2 19 5.8 4.8e+02 2.2 0.1 3 23 108 128 106 128 0.94

3 19 0.0007 0.058 14.5 0.1 2 23 132 154 131 154 0.96

4 19 0.08 6.6 8.0 0.1 1 20 401 420 401 422 0.92

5 19 0.021 1.7 9.9 0.3 2 23 432 453 431 453 0.93

6 19 2.9 2.5e+02 3.1 1.7 1 23 469 492 469 492 0.92

7 19 0.00089 0.074 14.2 0.9 1 23 501 524 501 524 0.97

8 19 1.6 1.3e+02 4.0 0.4 1 23 534 557 534 557 0.94

9 19 0.0028 0.23 12.6 0.1 2 23 600 622 599 622 0.92

10 19 0.82 68 4.8 3.1 1 23 627 650 627 650 0.94

11 19 2.6e-05 0.0021 19.0 1.8 1 23 656 678 656 678 0.97

12 19 9e-05 0.0075 17.3 1.3 2 23 686 707 685 707 0.96

13 19 8.9e-05 0.0074 17.3 2.3 1 23 712 734 712 734 0.96

14 19 0.0004 0.033 15.3 2.1 1 23 740 762 740 762 0.99

15 19 6.6e-06 0.00055 20.9 2.4 1 23 768 790 768 790 0.99

16 19 0.0025 0.21 12.8 3.6 2 23 797 818 797 818 0.98

17 19 0.0003 0.025 15.7 0.5 2 23 826 848 825 848 0.97

18 19 0.00036 0.03 15.4 0.1 1 23 853 875 853 875 0.96

19 19 0.00025 0.021 15.9 3.8 1 23 881 904 881 904 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.2	99	4.3	0.6	1	23	80	103	80	103	0.93
2	19	5.8	4.8e+02	2.2	0.1	3	23	108	128	106	128	0.94
3	19	0.0007	0.058	14.5	0.1	2	23	132	154	131	154	0.96
4	19	0.08	6.6	8.0	0.1	1	20	401	420	401	422	0.92
5	19	0.021	1.7	9.9	0.3	2	23	432	453	431	453	0.93
6	19	2.9	2.5e+02	3.1	1.7	1	23	469	492	469	492	0.92
7	19	0.00089	0.074	14.2	0.9	1	23	501	524	501	524	0.97
8	19	1.6	1.3e+02	4.0	0.4	1	23	534	557	534	557	0.94
9	19	0.0028	0.23	12.6	0.1	2	23	600	622	599	622	0.92
10	19	0.82	68	4.8	3.1	1	23	627	650	627	650	0.94
11	19	2.6e-05	0.0021	19.0	1.8	1	23	656	678	656	678	0.97
12	19	9e-05	0.0075	17.3	1.3	2	23	686	707	685	707	0.96
13	19	8.9e-05	0.0074	17.3	2.3	1	23	712	734	712	734	0.96
14	19	0.0004	0.033	15.3	2.1	1	23	740	762	740	762	0.99
15	19	6.6e-06	0.00055	20.9	2.4	1	23	768	790	768	790	0.99
16	19	0.0025	0.21	12.8	3.6	2	23	797	818	797	818	0.98
17	19	0.0003	0.025	15.7	0.5	2	23	826	848	825	848	0.97
18	19	0.00036	0.03	15.4	0.1	1	23	853	875	853	875	0.96
19	19	0.00025	0.021	15.9	3.8	1	23	881	904	881	904	0.97

Sequence Information

Coding Sequence: atgagttCAGATTCAGAAGACGAACCTCTTTCGTTGCTGGCATCAAAAAAGCCAAGTGAATCCgaatttaaagatttaaaattgcCTGATGATGTGGTCTTGGAAccgaaaaagaagaagaagaaaaaaaccaTTGGTAATAAAGGTCTCAGTATTAGTATGCAGTCTAAACCAGTGGTAATAGAAAGACCGGCTGATGTTTGGATGTACTTGAAAGATCTCAGCCCTTCGGGACCTTATAGCTGTCTATTATGTTCCTTTTGGTTCACAAATCGTTCAAGACTCGTTGTACACTACATTTTGAACcataaaaaagatttttgtggCATTTGTAGATACTTTGTACCGGACAGAGATTCGTGGGGTTCACACTTGCAGTTCCATTCACCGTGGCCATGCTCCCAGTGTGTGCAAAGTTTTGTTACCGAAAAACTATTACGAGAACACATGAGTACAGTCCACGAGTTAGTCCACTGTCGTTTGTGCCATTTCCGAGTCTCGGACAACAAATTATATGACAATCATCTGTTCCAAAAACATAATGTTACCAATACTTCAGCCAAATCCGATGAAGTGGTCTGGGATATTGAATATAAAGGTGCTTCGAAGTTTATGTGTCGGTTATGTTCCAAATCGAATGTACTAAGTCGTACCTTTTTCAATCATTACATGGGCTACCatcattttacattaaaatgtttCGCTCAAGTAATCTCGGGGAGTGATCCTCCATTTGATGTAAACGGTGCTGATTTGAGTGCAGAGTTTGTTAGTAATGAGCTGAGCAGTAACACGGCAGTTGGGTATGCGGATTTTGATAAAGATTCACCAGCAAAAACAGTTGCAAATCAACCTCAACGTAAAATGAGAGTGAAAGAAGAACTTTTAAGTGATGATGATAAATCTTGTGATGTTGGCCACCCTGGCAGTGAAGAGCACCTATTAAGGACTTATAAAGGTGATGAAGATTTTGATGTGACTTTAATTGAAATAACAGTTGTACAAAAATGCTATATAAATCATATCAAGGAGTATTTAGAAGTGAAAGATGGTGTTGCCAAGAATTCCTACATTGCCTACGATAGGTCATTAGAAAAGCTGGAAAATCTGGAATGTGTGATATGCAAGTCAATGATGACAGACATTCTCGAATATTATAACCATTTATCGAAAATGCACCTAATGAAAGTGAACCCATGTTATTTATGCAATGTGTGCTCAAACACTTTTGATTCATTGACCGATTTAGAGTCCCATGTTATACAAGAAACTAAAGAATTTGACGATCTATGGATATGCCAGTTCTGTGATAAagaatttgaaaatagaatgCAAACTAGAGCCCATTTAGAGGACCATTTTCAAGAGATGGAGTTTGATAATTGTTTTAGTCCACACTTAGGTTTCAAATGTAGGTATTGTCCTACATTGTTTTGGAATGAAAGTGATAGAGAGACACATCATATTAAAGTGCATTACAACATGCATAGAGATGATTATTACAAATGCGAGGGCTGTGATAAACTATACAGTGATCAGGTCTGGTTTGTCCATCATTACTTGTCCGAACACCAATCAGAAAGCGTACCAATATTCCTCTACAAGTgttcattatgtttattttcCTATCCGAATATTGAAGGAATACGAAGTCATTTCAGTACAGAACACCCGGAAGCAAGGAAGGTGTTCTGTTCTCTACCTCCTTGTAAATATAAGCCGCTTAGTCAGAGGAAGTCGTTTAAAATGCATTTGAAGGCCCTTCATTCTCCCAAACCTCGGCCGGACAGCACAGTGGAATGTTCGGTCTGTAGCCGTGACTTCAAGAACCCTAAGGCCCTAGCAGCCCACGTCACTCAAATGCACGGCGCTGGTCGGTACAAGTGTAAACTGTGTAAGGAATCTCTTCACTCTTCTGATGAGAGGAAACTTCACTACCTACTCCGTCACCCGGGCCAGCATCCCTACAGTTGCCCACAATGTGGGAAGTCGTTTCAGTACAAATCATCATTGTACATGCACAAACAAGAACACATGCCCAACAGACAGAATCTCACCTGTAAATATTGCAATAAAGTTTTTATGAAAAAGGACTCATATCGCGAGCACCTCCTCATCCACGAAGGTCCTCAGCATGCCTGCTCCTATTGTCCCATGCGTTTCGTTCAGCGTTCCAACATGTTGAGACATGAACGTAGACATACAGGGGAAAGACCTTACACCTGCTTGCAGTGTGACAGGACCTTCGCGGACAAGGGAGCCTGTAACTCACATATGAGATCTCACTCGCGAGAATCGATGTACACATGTATGTACTGCGGACAAACTTTTGTGCAGAGATCGAAACTGACTTATCACGTGAGGAAACATACAGGTGAAAATCTAGAAACTTGTTCAGTCTGTACGAAGTTGTTTACAAGTGTGTGTTCTCTCCGGGAACACATGAAGACTCATGAAGAGAAGATTTTCAACGTCAAGTGTCCGCTGTGTGATAAAAAATACCAAGACGAGCGCTACATGCTGCGTCATCTGCGCACCGCACACACGCGCGCCCGCCACCCGTGTCCTGTGTGCGACAAGACTCTCAGCAGCAACGTGGGCTTGCGGCTACATGTCGTCACGCACGCTGAAATCAGCATGTTTCACTGCAAAATCTGCCCGAAAGGTTTCTCCGGTAAGAAAACGATGATGAAACATTTAAGAAGGCGACACGGCCTCAAAGGAAACGAGATGAACATCGCAGATTATTACAACAAACTAGATCCCAGAGATTGCAAGCTGGGTTTAGACGAGGATGTCATGACAAGTATCTTTGGACCACCGAGAAAACCTGCAGAAGTATTAGTAGGAGATTTCGTTACAGTACACAATCAGACTATTTCTAAGGCTCAGTTGGATGAGCCCAGTGATACCCAGAATTCTGGAGAGTCGAAGAATGAGCAGTCAGAAACTCAAGATAGTCAGGAAAATCAGGACAGCCAGGAAAGTCAAGAGTATGAACGACATTTTGTTAACATTAAAATGGAGAAAATGGACAGTGATTCGGAATCCCAGGACAGTTCGACTTTGGAGCCGACTGATTTTGTCACCGTTAAGATTGAGCCCATGGATAGTTTGGAGGAATGA
Protein Sequence: MSSDSEDEPLSLLASKKPSESEFKDLKLPDDVVLEPKKKKKKKTIGNKGLSISMQSKPVVIERPADVWMYLKDLSPSGPYSCLLCSFWFTNRSRLVVHYILNHKKDFCGICRYFVPDRDSWGSHLQFHSPWPCSQCVQSFVTEKLLREHMSTVHELVHCRLCHFRVSDNKLYDNHLFQKHNVTNTSAKSDEVVWDIEYKGASKFMCRLCSKSNVLSRTFFNHYMGYHHFTLKCFAQVISGSDPPFDVNGADLSAEFVSNELSSNTAVGYADFDKDSPAKTVANQPQRKMRVKEELLSDDDKSCDVGHPGSEEHLLRTYKGDEDFDVTLIEITVVQKCYINHIKEYLEVKDGVAKNSYIAYDRSLEKLENLECVICKSMMTDILEYYNHLSKMHLMKVNPCYLCNVCSNTFDSLTDLESHVIQETKEFDDLWICQFCDKEFENRMQTRAHLEDHFQEMEFDNCFSPHLGFKCRYCPTLFWNESDRETHHIKVHYNMHRDDYYKCEGCDKLYSDQVWFVHHYLSEHQSESVPIFLYKCSLCLFSYPNIEGIRSHFSTEHPEARKVFCSLPPCKYKPLSQRKSFKMHLKALHSPKPRPDSTVECSVCSRDFKNPKALAAHVTQMHGAGRYKCKLCKESLHSSDERKLHYLLRHPGQHPYSCPQCGKSFQYKSSLYMHKQEHMPNRQNLTCKYCNKVFMKKDSYREHLLIHEGPQHACSYCPMRFVQRSNMLRHERRHTGERPYTCLQCDRTFADKGACNSHMRSHSRESMYTCMYCGQTFVQRSKLTYHVRKHTGENLETCSVCTKLFTSVCSLREHMKTHEEKIFNVKCPLCDKKYQDERYMLRHLRTAHTRARHPCPVCDKTLSSNVGLRLHVVTHAEISMFHCKICPKGFSGKKTMMKHLRRRHGLKGNEMNIADYYNKLDPRDCKLGLDEDVMTSIFGPPRKPAEVLVGDFVTVHNQTISKAQLDEPSDTQNSGESKNEQSETQDSQENQDSQESQEYERHFVNIKMEKMDSDSESQDSSTLEPTDFVTVKIEPMDSLEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -