Tvar022514.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028281.1:5171753-5176657[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00041 0.034 15.2 0.6 1 23 100 123 100 123 0.95 2 17 0.26 21 6.4 0.2 2 23 149 171 148 171 0.94 3 17 0.21 18 6.7 0.9 2 20 194 212 193 215 0.90 4 17 0.019 1.5 10.0 3.6 1 23 219 241 219 241 0.98 5 17 6.3e-05 0.0052 17.8 0.1 2 23 247 269 246 269 0.94 6 17 4.5e-05 0.0038 18.3 3.1 1 23 276 299 276 299 0.98 7 17 0.041 3.4 9.0 0.6 2 23 307 329 306 329 0.96 8 17 1.7e-06 0.00014 22.7 0.8 2 23 336 357 335 357 0.96 9 17 1.8 1.5e+02 3.8 0.3 1 8 363 370 363 376 0.92 10 17 0.041 3.4 9.0 0.2 1 23 482 505 482 505 0.95 11 17 0.082 6.8 8.0 1.0 1 23 575 597 575 597 0.97 12 17 0.021 1.7 9.9 0.2 1 23 601 623 601 623 0.96 13 17 0.49 41 5.5 0.5 1 23 628 651 628 651 0.80 14 17 0.03 2.5 9.4 2.5 1 23 658 681 658 681 0.94 15 17 3.6e-05 0.003 18.5 1.6 1 23 687 710 687 710 0.97 16 17 0.011 0.92 10.7 2.5 1 23 716 739 716 739 0.94 17 17 2.4e-05 0.002 19.1 0.6 2 23 746 767 745 767 0.97
Sequence Information
- Coding Sequence
- atgccCATCTTAGATGTATTTTACTTGCTTTTGGAAGATTCTTCTCAAAGCATCTTGAAGTTAAGATTTCCGCTAGGGATAGAAGGTGGCCGcaaagtaaaaaaatcaaaagcgGGTAGTTTGAAAGGTACTGTACAGGATCTAGCCGACGTTAAACCGTTCGCAGAAGCAACAGCAGTCAAGATAGAGATAGAAGCCGATCTTAAACCGGTCAGAGAGGTTCTCAAGCACATACACAATGCCAGAGTTATAATTTTGAACTCTAACGCTACGCCAGTGCAAAGCATCGGCATCCAATACGAATGTGCATTCTGTTTTGAATGCTTTTATGTACCATCGCAGTTGAAGGCTCATATTTTGGAGTGGCACGAATTGGCTAAAAGGGAGTACATGCATAAACACCCGTTAGGCTCGTTCACTGTCAAATTAGATGTAACTGATTTGAGATGTAGAATATGTAACGAGAGCATGGAGACTTTAGAACTTTTCGTGAAGCACATTCAAGCGACGCACTGTCTACCCTACTATAATGACATCAAAAATCATATTATACCTTTTAAATTTGAAGGTAATACGCTAAATTGTGCGATCTGTAATACCCACTAcgataattttaaacttttagtGCAGCATATGCCAAAGCATTTTAGGAATTACGAGTGTCATCTATGCAATACGGCATTTATCACGAGAAATTCCTGTTTGGCTCACGTGCGAAGACACGAAGTCGATGAAGTCGAATGCCCAAAATGCGACAAGAAATTCGCTAATAAAGTCAAAATGGAAGCCCATTTGAAAGCGGtccatatttttaaacacatgcGCTATAAATGCTCGGAATGCGGGAAAAAATTCAAAAGAATTAGCCTGAAAATGCTGCACATGAAGAAAAAGCATGGTACAGAGCCTTATGTAGTCAAATGTGGGGCTTGTCCCCGAACTTTTACTTCTGGATTGGGGCTCAGTCATCATGTGAGACGATACCACATGTTAGAAAAAAACGTGTCTTGCAACGTTTGCGGAAAGAAGTTCTTCAACCGTTCCACGCTGAAGACCCATATGGCTGTGCATGCGCAGACAGCAATGTATGAATGTCACCATTGCGggACCCTTCGTACGCCTGAACAACAAAGTATGAAAAAGAACtcgaatttaaataaagatttgAGCGCTGTTCAATCATTGACAATAACCGAAACCGTTGAAAAAAGTACCAACACAATTATTGGGGAGATTGATACAATTGGGAACAGATCGACATCTGATACTATCGTTGTAACTACCTCAGATAAAACCTCGAAATCACGCAAAACAAAGAGTGCTAGTACTGAGTCTAGTGATGTAAACTTAACTGCAAAACAATATAACAATCAAAGACAAAACATCATACTAATTTTGAAGAATACAAACGCAACACCTATTACGAATAATAATGAGACTGGGTACAGCTGTGTTTACTGTTATAACCGGATCAAAAACCCAGCAGAACTAAAATCGCACATTATTCAAGAACACGATGACATGATAAAAGGTTTTGTTGAAGCAATACCCAGGAGGTATTTATACGTAAAACTCGACATAACTGGCTTGAGATGCAAGCTATGTGACAGTACTATTGATGATATAAAAAGTATATACGATCATTTGATGAATACCCACAATTTAGAGTTGCATACCAACGTGAAGAACAATATCTTACCGTTTAGGTTTAACAGTGATCAATTCCAGTGCACCTCCTGTGATGTTGTGTGTGGCACGTTAAAATCTCTAGGAGAACACATGTACCAGCATTTCGGGGAGTATGTTTGCGACAAATGTGACGCTAAATTCATGATCAAGGTAATGCTGTCTAGGCATGCAATCAATCATTTGTCAGGCAACTTTCCCTGCACACAATGCTCTAAAATCTTCAAAGCTGATTCAAGGAGGATGACTCACGAGAAAGTCGCACACAAACCCAGAAATTCGATGTATAAATGTAGATTATGCGGTGAAAGTTTTAAGGAATATCACGTGAAAATGCGACATATGGTATCGAATCATGGCAGCACGAAAAAGTTTCAGTGTCAGACGTGTAGCAATACTTTTACGACTTGGGCTAAAATGCGTAAACACATGAGAGAAGTACATGTACGAAAACTGACATTCAACTGTCTCCATTGCGCACAGAAATTTAGCGATAGCCACCTTCTGAAAGGGCATTTAAATGCCGATCATAAAGGTGCAGAGGCATTGGAGTGTGACTTGTGCTCGAAAATGTTTGCTAGTAAAAAAAGTTTAGCGCAACACAGGCGAATTCATACATGA
- Protein Sequence
- MPILDVFYLLLEDSSQSILKLRFPLGIEGGRKVKKSKAGSLKGTVQDLADVKPFAEATAVKIEIEADLKPVREVLKHIHNARVIILNSNATPVQSIGIQYECAFCFECFYVPSQLKAHILEWHELAKREYMHKHPLGSFTVKLDVTDLRCRICNESMETLELFVKHIQATHCLPYYNDIKNHIIPFKFEGNTLNCAICNTHYDNFKLLVQHMPKHFRNYECHLCNTAFITRNSCLAHVRRHEVDEVECPKCDKKFANKVKMEAHLKAVHIFKHMRYKCSECGKKFKRISLKMLHMKKKHGTEPYVVKCGACPRTFTSGLGLSHHVRRYHMLEKNVSCNVCGKKFFNRSTLKTHMAVHAQTAMYECHHCGTLRTPEQQSMKKNSNLNKDLSAVQSLTITETVEKSTNTIIGEIDTIGNRSTSDTIVVTTSDKTSKSRKTKSASTESSDVNLTAKQYNNQRQNIILILKNTNATPITNNNETGYSCVYCYNRIKNPAELKSHIIQEHDDMIKGFVEAIPRRYLYVKLDITGLRCKLCDSTIDDIKSIYDHLMNTHNLELHTNVKNNILPFRFNSDQFQCTSCDVVCGTLKSLGEHMYQHFGEYVCDKCDAKFMIKVMLSRHAINHLSGNFPCTQCSKIFKADSRRMTHEKVAHKPRNSMYKCRLCGESFKEYHVKMRHMVSNHGSTKKFQCQTCSNTFTTWAKMRKHMREVHVRKLTFNCLHCAQKFSDSHLLKGHLNADHKGAEALECDLCSKMFASKKSLAQHRRIHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -