Tvar022513.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028281.1:5164008-5170298[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.019 1.6 10.0 0.7 1 23 92 115 92 115 0.95 2 23 0.079 6.6 8.1 1.5 1 23 185 207 185 207 0.98 3 23 0.033 2.7 9.3 0.8 1 23 211 233 211 233 0.96 4 23 0.025 2.1 9.6 0.6 1 23 238 261 238 261 0.80 5 23 0.025 2.1 9.6 2.6 2 23 269 291 267 291 0.92 6 23 0.0094 0.79 11.0 0.5 2 23 298 320 297 320 0.95 7 23 5.8e-05 0.0049 17.9 2.7 2 23 327 349 327 349 0.98 8 23 7.9e-05 0.0066 17.5 0.8 1 23 355 377 355 377 0.98 9 23 0.00012 0.01 16.9 2.6 1 23 383 406 383 406 0.98 10 23 0.22 18 6.6 1.0 1 23 521 544 521 544 0.94 11 23 0.014 1.2 10.4 1.5 3 23 642 662 641 662 0.99 12 23 0.95 79 4.7 1.3 1 15 667 681 667 690 0.76 13 23 0.0086 0.72 11.1 1.0 1 23 697 720 697 720 0.97 14 23 0.0076 0.64 11.2 2.1 1 23 726 749 726 749 0.96 15 23 0.00048 0.04 15.0 0.2 1 23 884 907 884 907 0.95 16 23 0.14 12 7.2 4.2 1 23 977 999 977 999 0.98 17 23 0.0016 0.13 13.4 0.2 1 19 1003 1021 1003 1022 0.95 18 23 0.014 1.1 10.5 1.9 1 23 1032 1055 1032 1055 0.95 19 23 0.1 8.3 7.7 5.2 2 23 1063 1085 1062 1085 0.95 20 23 0.0015 0.13 13.4 3.4 1 23 1091 1114 1091 1114 0.98 21 23 0.00077 0.064 14.4 2.4 2 23 1121 1143 1121 1143 0.95 22 23 0.00013 0.011 16.8 2.5 1 23 1149 1171 1149 1171 0.99 23 23 0.00021 0.018 16.1 1.7 1 23 1177 1200 1177 1200 0.98
Sequence Information
- Coding Sequence
- ATGAATAAAAGCAAATCGTTGCGTAAAAACGAGACCGCTGAAGGTACTAAAACAACTACTTGGGAGCTTTACCCTTTTGAGAATAGTTCCGCATCTGAAACTGTCACTGAGACAGCGTCAGATGCAGCTAAAGTCAAAACAAAGAATGCTAAAGCAAAATCACCTAATGATAAGAACGTATCTGCAAAAGAATATAACGAGCAAAAACACAACATCATACAGATCTTGAAGAATACGAACGCAACTCCTATAACTAATAATAATGAAACTGGATACAGCTGTGTTTACTGCTTCCAACGTATCAAAACCACGTCAGAGCTAAAGTCACATATCATTCAAGAACACGACGAAATGATAAAAGGATTTGTTGAAGCTATACCCAGGAGATATTTTTACGTAAAACTTGACATTACTGACTTAAAATGCAAGCTTTGTGACAATACTGTTGATGATTTAAAAAGTACATACGATCATTTGATTAATACCCACAGTTTGAAGTTGTACACTGGCgtgaaaaatatcattttaccGTTTAAGTTCAACAGTGAAGAATTTCAGTGCACGGCTTGCGACAGTGTTTGCGGGTCGCTTAGGTCCCTTCAAGAGCACATGTATCGCCATTACGGGGAGCATGTTTGTGACAAATGCGACGCTCGGTTCATGATCAAGGAGATGCTCTCAAGGCACGCGAGCAGCCATTTAACTGGCACATTTCCTTGCAAACAATGcgataaagtttttaaaactgATGCCAGAAGAATTGGTCACGAGAAAACCGTACACAACCCAATGGGATCAAAGTGTAAATGCAGATTGTGCGGTGAATCTTTCAAAGAATACTACCTAAAGATGCGTCATATGGAATTGGTTCACGGTGAAACCAAAGAGGTCCAGTGTCAAGCGTGTAGTCGCACTTTTCCGACCTGGGCTAAAATGAGGAATCACGTGAAAAACTTCCACCTGCGTCAGATGAGCGCAAAATGCCAGCATTGCGGATTAAGTTTTCAAAATAGCGAATTCCTGAAAGTACATATGAAGACTGATCATAAAGATGTCAAAGGTTTCGAATGTTCCTTCTGCTCGAAGTATTACGCTACCAGGGGAACGCTTGCTCAGCATATGCGAATACATAAGAATGATCGCAGATACAAATGTCAACATTGCGACGAAGCGTTCTTCCAAAAGCCCAGTTTGACGGgacatttgaaaacaaaacacgGAATAATGCCTGTTAAACCTGATAATAGAAATGACAgcACCCCGTATACGCCCGATGAAgagtatataaaaatattgactAAAACTGGAACTGCTGAAGCCACGAAAGCTAACCGGCAGTTCTATGTTATTGAGAACAGATCCACGCCTAAAATTGGCACAGTAAATGCGCCAAGCACCGCCACTGAAGAGTCCGAAACAGAAAGTGCCAATACTCTGCCCAAATATCCTATAGACGAAAGGATCGTAATAGCAAGAGAAAGTAATGATCAAAAGTACAACTTGAGACATATCTTGAAACATACAAATGCAACGCCGATAAAAAACTGCATCGAAGCAGGATACAGTTGCGCCTATTGCTCGGAACCACACAAAACCCCGGCAGATCTAAAGACTCATACTTTACAAAAACATGATGACATGATACATAAATTCATGGAAAGGACACCCTTGAGAGAATATTACGTTAGACTTGACATAACCGGCTTAAAGTGCAGGCTATGCTGCTTACATATTGATGTTTTAAAAGGCATATACGATCATCTAATCAACACCCATAATTTGAAGTTTTACACTGGTCGAACAAACTATATATTGCCGTTTAAGTTTGACAGCGATCACTTTCGTTGTTCAGCATGCAGCAGTTATTGTGGTACGTTCAAATCTCTTCAAGACCACATGTTTCGCCATTTTGGAGAACATGGTTGTAAGACATGCGACGCTAAGTTCATGACAAAACAGATGCTTTTAAAGCACTCTAACACTCACTCGACTGGCTCTTTCCGATGTAGGCATTGCGAGAGAGTTTTCGAAACAGACAAACGGAGAATCGAACATGAGAAAGACGTGCATAATTCAACTGGTGCTTTGTTCAAATGTCTCTTGTGCGACGTTACGTTTAAAAACTACGGCATGAAACGGCAGCATTTGATGTCAGTGCATGGAAGCACTAATGAGTTTCATTGTCAAACGTGTAACAACATTTTCCCGACTTGGGCTAAAATGCAACAACACATGAAGGAGTTCCATTTGAGGAACCGAAGTATACCTGGTCAAGAATACATGAACAAGTATTTGAATTTAAGTAAAGACTTGAACAAATTAATGTCAATATCAAAAAGAAATCCAGCTCAACGGGGTACCGTAATAACTGCTACTACAGTTAACAAACTACCTATTGAGACTGTTGTTGACAAAGCTGAAACTCCTATCAATGCTAATGCTCCAACTGAGATGAAATTCGTGCCCAAAATTGTCACCATAACTGCACTCAGTAAAGTCGATAATGTAgacaaaacaaagaaaaataaagtggCCAAAACTGCGTCTAGGAATTCAGTTGCAACTGAAACTCGCAGTCAAAAGCACAACATCAGACAGATCTTCAGAAACACTAATGCAACGCCTATAAAGAGTTGCAATGAATCTGGATACAGCTGCGTTTACTGTTCGGAAGTGTACAAAACTCCAGCAGAACTAAAATCTCATACGTTGCAAGTACACGATGATGACGTCCAAAGCTTCATGTCTAGGACATCCATCAGAGAGTACTACGTTAAACTGGACATAACGGACCTAAAATGCAAGATATGTGACAGCCCTATTGatgatttaaaaagtatatacGACCATCTCATAAACACCCACCACTTGGAGTTTTACACTGGTCTGAAAAATTATATCGTACCCTTCAGGTTTAATAGTGAACAGTTCCGCTGTACTGCCTGCGACTGTGTTTGTGGATCACTAAAATCCCTTCAAGAACACATGTACAAGCATTTTGGTGAACACCCTTGCGAGAAATGTGGCACTGTGTTCATTAATAGACAGGGCCTTAAAAACCACGAATGGAACACTCATAATTTGACAGGCAGCTTTCCTTGCACGAAATGCTCGAAAACATTCGAGACTAATCGAAAGAGGATGCTTCACGAAAAAATGGTGCACGACCCGACACGGCACGTCAACAAATGTAGCATTTGCAACGAGACTTTCAAGCATTATCATATGAAAAAGCTACATTTAAAGCTGGTCCACGGCAGTGCGAATGAATTTCAGTGTCAGGCATGTAACCATAGATTTCCTACTTGGAATAAACTGCGTACGCATGTCAGAAAATACCACTTGCGGCAGATCAGTGCTAAATGCCATCATTGCGGTATAAGTTTTCAATCTAGCGAGCTTTTGAAGGGCCATTTGAAGGCTGAACATAAGGATGACCAAGGATTCAAATGTTCCCTATGTTCGAAGTACTACGCTAGCCGGAAATCCCTGAGGCAACATTTGCGGATACATAAAAACGATCGGAGGTACAAATGCGAGCATTGCGGGGACGCTTTCGTCCAACGCACCAGTTTAAAGGGACATTTGAGGTCAAAACACGACATTTTGTCGGTGAACACGATCGAAAATAAAGCTGTTAATGATATTTTCAAATGCTCATAA
- Protein Sequence
- MNKSKSLRKNETAEGTKTTTWELYPFENSSASETVTETASDAAKVKTKNAKAKSPNDKNVSAKEYNEQKHNIIQILKNTNATPITNNNETGYSCVYCFQRIKTTSELKSHIIQEHDEMIKGFVEAIPRRYFYVKLDITDLKCKLCDNTVDDLKSTYDHLINTHSLKLYTGVKNIILPFKFNSEEFQCTACDSVCGSLRSLQEHMYRHYGEHVCDKCDARFMIKEMLSRHASSHLTGTFPCKQCDKVFKTDARRIGHEKTVHNPMGSKCKCRLCGESFKEYYLKMRHMELVHGETKEVQCQACSRTFPTWAKMRNHVKNFHLRQMSAKCQHCGLSFQNSEFLKVHMKTDHKDVKGFECSFCSKYYATRGTLAQHMRIHKNDRRYKCQHCDEAFFQKPSLTGHLKTKHGIMPVKPDNRNDSTPYTPDEEYIKILTKTGTAEATKANRQFYVIENRSTPKIGTVNAPSTATEESETESANTLPKYPIDERIVIARESNDQKYNLRHILKHTNATPIKNCIEAGYSCAYCSEPHKTPADLKTHTLQKHDDMIHKFMERTPLREYYVRLDITGLKCRLCCLHIDVLKGIYDHLINTHNLKFYTGRTNYILPFKFDSDHFRCSACSSYCGTFKSLQDHMFRHFGEHGCKTCDAKFMTKQMLLKHSNTHSTGSFRCRHCERVFETDKRRIEHEKDVHNSTGALFKCLLCDVTFKNYGMKRQHLMSVHGSTNEFHCQTCNNIFPTWAKMQQHMKEFHLRNRSIPGQEYMNKYLNLSKDLNKLMSISKRNPAQRGTVITATTVNKLPIETVVDKAETPINANAPTEMKFVPKIVTITALSKVDNVDKTKKNKVAKTASRNSVATETRSQKHNIRQIFRNTNATPIKSCNESGYSCVYCSEVYKTPAELKSHTLQVHDDDVQSFMSRTSIREYYVKLDITDLKCKICDSPIDDLKSIYDHLINTHHLEFYTGLKNYIVPFRFNSEQFRCTACDCVCGSLKSLQEHMYKHFGEHPCEKCGTVFINRQGLKNHEWNTHNLTGSFPCTKCSKTFETNRKRMLHEKMVHDPTRHVNKCSICNETFKHYHMKKLHLKLVHGSANEFQCQACNHRFPTWNKLRTHVRKYHLRQISAKCHHCGISFQSSELLKGHLKAEHKDDQGFKCSLCSKYYASRKSLRQHLRIHKNDRRYKCEHCGDAFVQRTSLKGHLRSKHDILSVNTIENKAVNDIFKCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -