Basic Information

Insect: Trilocha varians
Gene Symbol: -
Assembly: GCA_030269945.2
Location: AP028279.1:13102693-13106445[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00019 0.016 16.3 0.7 1 23 448 470 448 470 0.99

2 8 3.7e-07 3.1e-05 24.8 1.6 1 23 476 498 476 498 0.98

3 8 7.2e-06 0.0006 20.8 0.6 2 23 507 528 507 528 0.98

4 8 7.4e-06 0.00062 20.7 0.8 1 23 534 556 534 556 0.99

5 8 8.9e-08 7.4e-06 26.8 2.1 1 23 562 584 562 584 0.98

6 8 5.1e-07 4.3e-05 24.4 1.3 1 23 590 612 590 612 0.97

7 8 8.6e-05 0.0072 17.4 7.3 1 23 618 640 618 640 0.97

8 8 0.00012 0.01 16.9 1.3 1 21 646 666 646 667 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00019	0.016	16.3	0.7	1	23	448	470	448	470	0.99
2	8	3.7e-07	3.1e-05	24.8	1.6	1	23	476	498	476	498	0.98
3	8	7.2e-06	0.0006	20.8	0.6	2	23	507	528	507	528	0.98
4	8	7.4e-06	0.00062	20.7	0.8	1	23	534	556	534	556	0.99
5	8	8.9e-08	7.4e-06	26.8	2.1	1	23	562	584	562	584	0.98
6	8	5.1e-07	4.3e-05	24.4	1.3	1	23	590	612	590	612	0.97
7	8	8.6e-05	0.0072	17.4	7.3	1	23	618	640	618	640	0.97
8	8	0.00012	0.01	16.9	1.3	1	21	646	666	646	667	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGCTGTCATACGGCGATTGGTGCGATGTGAAACTGCTCTGTGGAGCTCGTACATTTGACGCTCATCGTGCTGTACTTGCCAGCGTTAGTATCTTCCTCAGGAAAGTTCTTTTATCATGTCCATCAAATGAATCGCCATCGTTTATAATATTGCCTGAGTTTGACGAGGACGCTATGTCTTCAGTTCTTTACTATATTTATAATGGAGAAgtagttttacaaaaacaaaagatagaaatgttttttgaaataattaaagCTATGGAAATTTACATTGATTACGAATATTTGAATTCAAAAGTAGAAGACAAGAATAGCTCTATCCCGGGTGTACTTTCaagtaaaaaacatttaaatgtaTTAGATTCAAATTCCACAGAATGTGTGAATAATTCAAtggttaatattaaaaagaaatccAATATCTACGATGTGCAATATCAGTTGAAAAATATAGATTCTCACGAAAGGAGAATGAGATATCAGGATAACATGAATCTACAATGTCACAATACTTTCGGAGATTTCAAACCACCGCTCACAGACCGACAAAGGAACTCTTTCCTACGTGATTTATTTATCGAGACATATCCTCGAAACGGTAATGTTAACGGTCAGACGAAAAGCGTGCTAGCAATATCAAACGAATGCTATCGTTCTCCGGGATCTGTGCTCTTCACGAATGCAAATGCCGAACATCTCAGCGCCGGCGACACGGTtgtagaaaaatacaaaaatacggTCAACATCCCTTTTTATTCGCCGACGTATCAGACTGAACACTTAAGTAACTACACTCATAGTCAGAACTTGATGCAGAAGTATATACAAACTAAAAATACAGATGAAATCATCAATTTAAGATCCTGTTATGGATATACAAATATGGTAACACAATGTACAGATTTATCAAATGTTCCCATATTAGAGACAAACATGCTGAAAGACAACGTTGTTAAAACGCATCCAAAATTTTCATGTTTTTCCAAATCGGATGCCGGAGTACCTTCGATGGCTTTAGAAAACCAGACAGTTTTAACAAAGAGTTCATTGCTAATTAGTCTGGCTGCAAATTTCGGAAAGGAATATTCGCAATCTAAAACAATGTCAAAAGCCACGATTTCGAATCATGTTTTAGAAAACCCATGGAGACCACGTTTGCCAGTTGAGACAAAACCATTTCGAAGAAAATATGGAGGATCAGATGAGTTCATCGGAGGATCATCTTCATTAGACAAGAGTGCTGAAACAAATATAATTAGTGACAGTAACAATAATTGCGAAACTGATCCAGTAGCTCTCAATGTTCGACTACCAACATTAAAAGAAGAGTTTAAGTGCGATGTTTGTAATCAGATATTTCTGTCAAGCGAAACACTAGTAACACACATGCGTCGTCACTCAACAAGCGCACGGTATGAGTGCAGTGAGTGTGGTAAAACATTCTCGCAGCTCCGTAACTTCAAGTACCACATGTCTATACACAGAGGTACCAGAGAATTTGCAgcaacttgcactgtatgtggGAAGTATTTTAACGACAGAGGATACCTTAGCAGCCATATGaaaatacatagGAATCGTAAGGAATACAAATGTTCGCAGTGTCCTAAATCTTTCAATCAGCGCGTTGCGTACAACATGCACGTGAGAATACACACAGGAGTGAAACCTCATGTATGTGATGAATGTGGCAAAGCGTTTTCTCGTAAGATGCTCTTGAAGCAGCATCAGCGTACACATTCAGGAGAGCGACCGTACGCCTGTCCGCATTGTGACAAGCGATTTGCTGATAGATCCAATATGACACTTCATTTAAGACTGCATACTGgTATAAAACCGTTTTCGTGCACGCTGTGCCCAaaatcatttacaaaaaaacatcatcttaagtctcatttaaattttcacaCTGGTTCGAAACCCTACTCCTGTCCGCGATGTAAACTCGCCTTTACACAATCATCGAACATGCGAACTCATTACAAAAAATGTACAGCACCAATACCTAATGATACTATCGAAGCGACaccttcaaataaataa
Protein Sequence: MCEWLSYGDWCDVKLLCGARTFDAHRAVLASVSIFLRKVLLSCPSNESPSFIILPEFDEDAMSSVLYYIYNGEVVLQKQKIEMFFEIIKAMEIYIDYEYLNSKVEDKNSSIPGVLSSKKHLNVLDSNSTECVNNSMVNIKKKSNIYDVQYQLKNIDSHERRMRYQDNMNLQCHNTFGDFKPPLTDRQRNSFLRDLFIETYPRNGNVNGQTKSVLAISNECYRSPGSVLFTNANAEHLSAGDTVVEKYKNTVNIPFYSPTYQTEHLSNYTHSQNLMQKYIQTKNTDEIINLRSCYGYTNMVTQCTDLSNVPILETNMLKDNVVKTHPKFSCFSKSDAGVPSMALENQTVLTKSSLLISLAANFGKEYSQSKTMSKATISNHVLENPWRPRLPVETKPFRRKYGGSDEFIGGSSSLDKSAETNIISDSNNNCETDPVALNVRLPTLKEEFKCDVCNQIFLSSETLVTHMRRHSTSARYECSECGKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCSQCPKSFNQRVAYNMHVRIHTGVKPHVCDECGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGIKPFSCTLCPKSFTKKHHLKSHLNFHTGSKPYSCPRCKLAFTQSSNMRTHYKKCTAPIPNDTIEATPSNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490295;
90% Identity: iTF_01490295;
80% Identity: iTF_01490295;