Tvar022530.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028281.1:5245144-5249150[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00081 0.068 14.3 0.9 1 23 58 80 58 80 0.98 2 18 0.43 36 5.7 0.0 2 23 106 128 105 128 0.92 3 18 0.18 15 6.9 0.2 2 23 151 173 150 173 0.95 4 18 9.6e-05 0.008 17.2 0.1 3 23 181 202 180 202 0.97 5 18 0.0079 0.66 11.2 6.1 3 23 209 230 208 230 0.96 6 18 0.053 4.4 8.6 0.8 1 23 236 259 236 259 0.97 7 18 7.9e-05 0.0065 17.5 0.9 2 23 266 288 265 288 0.94 8 18 0.0027 0.22 12.7 1.1 1 23 294 316 294 316 0.96 9 18 0.0078 0.65 11.2 0.8 1 23 322 345 322 345 0.88 10 18 0.00036 0.03 15.4 1.0 1 23 423 445 423 445 0.97 11 18 0.57 47 5.4 0.1 3 23 472 493 470 493 0.94 12 18 0.00019 0.016 16.3 0.3 3 23 517 538 516 538 0.97 13 18 0.014 1.1 10.5 2.0 3 23 546 567 545 567 0.91 14 18 0.1 8.5 7.7 0.2 2 23 573 595 572 595 0.96 15 18 0.033 2.7 9.2 1.7 1 23 599 622 599 622 0.97 16 18 0.0032 0.26 12.4 4.0 1 23 628 651 628 651 0.97 17 18 0.16 13 7.1 0.1 2 23 658 679 657 679 0.96 18 18 1.1e-05 0.00088 20.2 1.3 1 23 685 708 685 708 0.96
Sequence Information
- Coding Sequence
- ATGGTGGGTGGAGAACTATTATGCAATAGACAAATAAAGAACGTAGAAGACTTACCTCAGCCGCGGCGACCGGGAACTTCCAAAAGAGACGAGCGTCAGAAACTAAGGCACAACGTCATACAAGTCCTTATAAACTCCATGGTGATGCCATTCAGGTGGTTAAAGAGTTCGTACAGATGTTTTTACTGCTACGATATCTTTGACCAGTCGTCTGACCTCAAGGCACATCAAATCTCCCACCTCGACAACGAGACTAAACATAGGACAATGAACAATTACTGGGAACCTGTGGTCTACGTCGATGTGTCTGATTTGTCTTGCAGACTTTGCCCGGAGATTTTAAACGATCTCTACGAATTGATAGATCATTTGGTTTCGAAACATGATGTTGAATACAACAATGATGTCGGCAGCTGTATGGTTCCGTTCAAGTTGGACAATTTGACGCTAAGTTGTCTCGTCTGTGGCGCCAATTTCTTCACTTTTGGTCCTCTGCTTCAACATACAAATAAGGACCATAAAGGCACCTCAAGAATCTTATGCGAGATTTGCGGTCAGAACTTTAAAGACAATGTCATGTTGCGAACACACGTCAAGATCGTGCACGAAAACGCTGGTCTGTTGTGCACGGAATGCGGTGAAAAATTCGACTCGAAGTGCAAACTAAAAACGCATCAAAAACATCAACATGATATTGAGAAGAAGTACGTGTGTTTGGTCTGCCCTTTGATCTTCCAAAGTCACTACAAGAGGTCACGGCATATGGCCATGGAACACGAGAATCGTGAGGTCATTCGTTGCCCGCATTGCCCCAAAACCTTCGTCTTCCGCTCCATGATGATGACGCATGTCCGAGACGGGCATTTAAAAGTAAAGAACCACATTTGCAGTATCTGTGGTTGGAAGGCTGTGAATTCTAACAGACTAAAGAATCACATGTATAAACACAGCGGGGAGAAGAATTTCAAGTGTGAATCGTGCGATAAAGCGTTCACGACTCGAAAGATAATGAGGGCGCATTTCGCGAGGATCCACAAACAAGTACAGATCCAACAACCGTTATTACATTACGATAATCAAGTCGATCATTATAATGAATCGCGcgtgaaaattaaaattgaggTCGAAGATGAAGAGACGAAACCTAAAACCAAGAAAAAGGAGAAAAAATCTCCTCAAAAAGATAACCTCAACTTGCTAAGGGAAAGTGGCGTTCAGCTACTATCAAAATCAACAGTCATACCATTCAGATGGTTAAAAAGTTCCTTCCGATGTTTCTATTGCTACGAAATCTTTAAAGAACAAAAAGACTTAAAAGCTCACCAAATCGCCCATCAAGACCCAGAAACAATACTTAAAACAATGAATAAATACTGGGAATCGGTCATCTATGTTGATATTTCCAAACTAGCTTGTCGACTTTGTCCAGAAAAGATAGACGATTTCGACTCCCTGATACAACATttgataaaaaaacacaaaattccTTTCAATATCGACATAGCTAACTGCATTAAACCGTTCAAACTAGAAGACATGACTGTAGACTGTGTGATATGTGGCAAAAACTACACGAATTTCTCATTCTTACTCGTACACATGAATAAGGAACATTTCGACCTATTCTCGATTCTCTGCGACATTTGCGGGAAACATTTCAAGTCCCAACGGATCTTAAGGGACCACGTGATCCACGATCATGAAAAAAAGCCAGTCGAGTGTAATCTGTGCGGCGAGACGGTCGTCAGCATGACAAGAATGAGAACTCATTTACAGAAGGCCCATAATAAAAGATACCGGTGCTTGGTCTGCGCTGAAACCTTCGAAAATCACTACAGACGCACCCGTCACATGATCTCGATCCACAAGCTTAAAGACGAATTTAAATGCCAACACTGCACGCTCAGTTTCGTGTACAGAAATCGACTATTAACTCATATTAGAGAAAAACATCTAAGGGAAAAAAATGTGATGTGCAGTGTCTGCGGTTGGGAGGGCTTTGGTAAAACTAGTTTGGGTCTCCATATGAAAAAACATAGCGATGAAAGGAACCATCCTTGTCCATCTTGTGATAAAGCGTTCAAAACTAGAAAGAATATGATACAGCATTTAAGAAATATACACCAAAAGGGAGCTAAACCAAAGGaaatagttttacaaaattTGTAA
- Protein Sequence
- MVGGELLCNRQIKNVEDLPQPRRPGTSKRDERQKLRHNVIQVLINSMVMPFRWLKSSYRCFYCYDIFDQSSDLKAHQISHLDNETKHRTMNNYWEPVVYVDVSDLSCRLCPEILNDLYELIDHLVSKHDVEYNNDVGSCMVPFKLDNLTLSCLVCGANFFTFGPLLQHTNKDHKGTSRILCEICGQNFKDNVMLRTHVKIVHENAGLLCTECGEKFDSKCKLKTHQKHQHDIEKKYVCLVCPLIFQSHYKRSRHMAMEHENREVIRCPHCPKTFVFRSMMMTHVRDGHLKVKNHICSICGWKAVNSNRLKNHMYKHSGEKNFKCESCDKAFTTRKIMRAHFARIHKQVQIQQPLLHYDNQVDHYNESRVKIKIEVEDEETKPKTKKKEKKSPQKDNLNLLRESGVQLLSKSTVIPFRWLKSSFRCFYCYEIFKEQKDLKAHQIAHQDPETILKTMNKYWESVIYVDISKLACRLCPEKIDDFDSLIQHLIKKHKIPFNIDIANCIKPFKLEDMTVDCVICGKNYTNFSFLLVHMNKEHFDLFSILCDICGKHFKSQRILRDHVIHDHEKKPVECNLCGETVVSMTRMRTHLQKAHNKRYRCLVCAETFENHYRRTRHMISIHKLKDEFKCQHCTLSFVYRNRLLTHIREKHLREKNVMCSVCGWEGFGKTSLGLHMKKHSDERNHPCPSCDKAFKTRKNMIQHLRNIHQKGAKPKEIVLQNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -