Tvar019389.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028278.1:3214497-3218864[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9e-06 0.00075 20.5 1.7 1 23 174 196 174 196 0.97 2 11 7.2e-06 0.0006 20.8 3.3 1 23 211 233 211 233 0.99 3 11 5.3e-05 0.0044 18.0 2.4 2 23 241 262 240 262 0.95 4 11 0.0024 0.2 12.9 0.8 1 23 267 289 267 289 0.98 5 11 6.1e-05 0.0051 17.8 1.7 1 23 295 317 295 317 0.97 6 11 1.4e-05 0.0012 19.8 0.7 1 23 323 345 323 345 0.95 7 11 2.9e-05 0.0024 18.9 0.7 1 23 351 373 351 373 0.97 8 11 0.00054 0.045 14.9 3.6 1 23 379 401 379 401 0.97 9 11 0.0014 0.11 13.6 4.7 1 23 407 429 407 429 0.98 10 11 2.7e-07 2.3e-05 25.2 0.8 1 23 435 457 435 457 0.98 11 11 0.00026 0.022 15.9 3.6 1 23 463 485 463 485 0.96
Sequence Information
- Coding Sequence
- ATGGCGTGGAACTCGCATCTAATTACAAATATACAAAGTTGCTGTAGGACTTGCCTATGTGATATGGCGGAAAAAACCTCCTACGATATTTTTTCTGAAACTGAAGAATCGCAATGTTTAAGACATATTTTATCGTATATCACGACAATAGAGTTAATATCCAGTAAGACCCTCCCAAATATGCTATGTGAATCATGTCACACTGAAATAATGAACTTCaacacttttaaaacaaatgttGAGAAAGTAGAGGATTTATTAAAGAAACATGTTCAGGGTTGTGAAATAGTTGCGGTAACTAAAGAAGAATTAAAAGATGAAAAATATGAACCAGAGTCACTGTTGTATTACAATCAAAGTGACATCAAAGCTGACGGAGATGACACTGTTTTCAACGACAATGAAGATATATCTGATGATATGCTAGAAGTGACTACTAATCTATACACTGATGATGAAAAAGTTGAAGACATTAAACCTAAAATAGCAcattccaaaacaaaaaaagagccCCAAAAACATATATGTGATGTCTGTGGACAGGAATTCAAGTACCGTAACAAACTAATCAAGCACATGTTGACACACAACCAGTTTCCAAACGAAGCAACTAAagatactaaattaaaattccaATGCGATGAGTGCGACAAAAATTTCAAAAGCGTCAATTCGTTGTGTGCTCATAAACGGACCCACTCTAAGAAAGATAGAATATTAATGTGTTCTGTCTGCAGTAAGGTGTTTAAAAAGGTTAGCCATCTGAAGCGTCACGAATTATCTCATAGAGAAAAGATTTATAGGTGTATGTATTGCGCCCGTTCATTTGCAGACGAAAACAGATTTAATGAACACATCAAATTGCATAAAGAGGCCAAAAAACATGTGTGTTTGCTTTGTAATAAgtcttttattaatattatgagcTTGCAGAATCATTTGAAAACGCATGTGAAAGATAATGCATTTCTGTGTTACTATTGTGGCAAGAAGTTCGGTTCAATAGGGAATTTGAATCAACACATCAATAGGCATACTAAGAAAACGCTATTTCCGTGTGATAAATGTTCTAAAAAATTTGTTTCTAAAGGCGGACTAAAGTCTCATCTAGTAAGGCATAGTACAGAAAAGCTATATAAATGTGAACTTTGCGATGCCAAGTTCGGGCACCGGTATTCACTCGAAAGGCACAAGTTTCGACATTTGGGTGTTAAACCTTACAGTTGTTCCTCTTGTATGAAAGGATTCTCAAGTAAATATCATCTGAGTAGGCACTTCCGTATCCACTCGGGCGAGAAACCATACCAGTGTGACATGTGCGAGCGTTCATTCGCGCAGAAAGGAGACTTGAATAGACACAGAAGGTTACACACTGGCGATAAATATCACAAatGCACACAATGTTCTCAAACATTCCGACTGAAGTCTGATTTATTACAACACATGACAGATCACTACAATGCGTCCCAAACTCCTGATAAAACGATTGAAAACGAACCTAATACTAAGGTGAGCCTAGAGAAGCCGGACAAGAGTTATATCATCGTGGAAGTGCCTCATGTTTATGAATAA
- Protein Sequence
- MAWNSHLITNIQSCCRTCLCDMAEKTSYDIFSETEESQCLRHILSYITTIELISSKTLPNMLCESCHTEIMNFNTFKTNVEKVEDLLKKHVQGCEIVAVTKEELKDEKYEPESLLYYNQSDIKADGDDTVFNDNEDISDDMLEVTTNLYTDDEKVEDIKPKIAHSKTKKEPQKHICDVCGQEFKYRNKLIKHMLTHNQFPNEATKDTKLKFQCDECDKNFKSVNSLCAHKRTHSKKDRILMCSVCSKVFKKVSHLKRHELSHREKIYRCMYCARSFADENRFNEHIKLHKEAKKHVCLLCNKSFINIMSLQNHLKTHVKDNAFLCYYCGKKFGSIGNLNQHINRHTKKTLFPCDKCSKKFVSKGGLKSHLVRHSTEKLYKCELCDAKFGHRYSLERHKFRHLGVKPYSCSSCMKGFSSKYHLSRHFRIHSGEKPYQCDMCERSFAQKGDLNRHRRLHTGDKYHKCTQCSQTFRLKSDLLQHMTDHYNASQTPDKTIENEPNTKVSLEKPDKSYIIVEVPHVYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -