Tvar022569.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028281.1:5419138-5423860[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.43 36 5.7 3.1 1 23 63 86 63 86 0.95 2 19 0.11 9.4 7.6 0.0 3 23 109 129 107 129 0.93 3 19 0.026 2.2 9.6 3.7 1 23 151 173 151 173 0.96 4 19 0.00038 0.031 15.4 0.6 1 23 177 199 177 199 0.96 5 19 0.00048 0.04 15.0 0.7 1 23 204 227 204 227 0.95 6 19 0.0014 0.12 13.5 0.5 1 23 233 256 233 256 0.96 7 19 0.13 11 7.4 2.8 1 23 263 286 263 286 0.96 8 19 0.00015 0.012 16.6 1.6 1 23 292 314 292 314 0.96 9 19 1.5e-06 0.00013 22.9 0.6 1 23 320 342 320 342 0.99 10 19 0.012 0.97 10.7 0.5 1 20 396 415 396 419 0.88 11 19 0.32 27 6.1 0.1 2 23 448 470 448 470 0.88 12 19 0.24 20 6.5 1.2 1 23 492 514 492 514 0.97 13 19 0.015 1.2 10.4 0.9 1 23 518 540 518 540 0.97 14 19 0.0037 0.31 12.2 2.6 1 23 545 568 545 568 0.93 15 19 0.2 16 6.8 5.4 1 23 574 597 574 597 0.96 16 19 0.00064 0.054 14.6 0.3 1 23 604 627 604 627 0.98 17 19 3.6e-05 0.003 18.6 0.3 1 23 633 655 633 655 0.96 18 19 9.2e-07 7.6e-05 23.6 2.4 1 23 661 683 661 683 0.99 19 19 0.00083 0.069 14.3 6.5 1 23 689 711 689 712 0.96
Sequence Information
- Coding Sequence
- ATGCCTATATCGgttttttctctatttttagacGAGACTGAAGCCATGCCTATAATAGCTGATCCGCACGACCTCAAATTCGCGACCATCGAGCGCGATGAAGCCAAACGAGAACTTTTCAGGAATAACATCACAACGATACTAGAATCTTGCACAGCCTACCCCTTCAAATACAGAAAGGGGGCTTATATGTGCTTCTATTGCAAGAACAGCTTCTTAGACCCAACGAAACTTAGAGAGCACACGCATTCCGAGCATCCGAATCCAAAGCCGTCGAAGCCACGTAAATATGAGCCTCTAAAAATGGACTTTACTAACATCATCTGCAAGATTTGCGGGCAGGACATAGAAGATTACGCGATGTTAAAAAATCACGTGACAGAGCACGGAATGACTATAGATCTAACGCACGGCGAAAGCGTCCTACCCTACAAATTAGATGGGGATGTTCACTACTGCCAAATTTGCGGCAAACAATACGAGGTATTCCTCACATTACATAAACATATGAACGATCACTACCAGCTTTTCATTTGCGAGCATTGCGGCAAAAAGTTCGCCACAGCCCAAAGAATGGTGAACCACGCAATAACGCACGAAACCGGCGCTTTTACCTGCACGACTTGCGGCAAAATCTTCAGTTCCTACTCAGCTAGATATGCCCACGTGTCCAAAGTCCACAAATCGAATAAACGCTACAAATGTCCAGTATGTGACGTCAAATTCGTCTCTTATAAACAGCGACTGAAACATCTGACGATCGTCCATGGACAGAAGCCCGCTGCGTTTCCGTGTCCATCTTGCCCGAAGATCTTCGACTTATGTAGCAGACGAACGGCTCATATCCGACACAAGCATCTCCAAGAACGAAACCACGTGTGCTCTGAGTGCGGGATGAAGTTCTTCTCGAATTATGAACTGAAGGAACATTTAGTGAAACATGGGGGTGAAAGGATATATCAGTGTGATGTTTGTAAGAAAGCTTATGCACGATTGAAAACGTTGAGAGAACATATGAGAATACATAACAATGAGAGGCGGTTTATATGTCCAGTCTGCGGTAACAGCGATACGGAGAACGATCTAGAGGAGATAGAAAAGCAAAATCATATCACGAGAAGGCTTAACGCGTGCACGATTGTTGAAAACACAACAGTCTGCCCTTTCAGATGGTCTAAGAACCACTATCTCTGTTTCTACTGCGACCTCAATTTCCCTGATCTAGCAACCCTAAAAAAACACAACGATGGCCAACACGAGAAAACAAATTCGATTCCAATATTACGAGGActcaaaaaaatgaaaaagactGATTTTGTCAAAATTGATTTCAGTAATGCGGTGTGCAGAATTTGCGGTAGGACGCTAGATAATATAGCCGAAACTAAAAGACATTTGGTAGAGGAACACGGAAAGAAAATAAACTTCGAATGTGGAGATGGAGTTTTGCCTTTTAAGTTGATGTCAGGCAACTTTAACTGCGCCATCTGTCGAGTTGATTGCGAAGAATTCAAGACCTTAAATCAACATATGAACATACATTACCCTCATTACATCTGCGAGCAGTGCGGCTCAGGTTTTATGACACCACAAAGACTGAAGAACCACGGGCACACCCACATTTCAGGGTCACATCCTTGTGAAATTTGCCACAAAAAATTCCGTTCGAAAAACGCTAAAAACGACCACTACGCTATTGTTCATCTGAAAGCCAAAAGACACAGGTGTCCGCACTGTTTTGAACTTTTCAGCAACTATTTTCAACGCAACAAGCATCTGTCGTCCGTTCATGGACAGAAATTAAAAGAGTTTAAGTGCTCTGTCTGTTCTAGAGTGTTCCAAGCTAGTGGAAAATTAGGGGTCCACATGAAGACGGTGCATTTGAAGCTGAAAAGATTTGCATGTGACGTTTGTGAATGGCAGTTTTATTCCAAGTCAGAATTAAAAGAGCATATGGTCAAGCATACCGGAAAGAGGGCTTTCCAATGTACGATTTGCAAAAAGTTTTACGCGCGGAAATATACGCTGACAGAACACATGAGAATACACGATAATGACAGAAGATTTGTGTGCGCAGTCTGCGGTAGTTCTTTCGTAcaaaaatgtagtttaaaaCACCACACGAAAACACATCATCCTAATAGCATCACTCAGATATCCAAAGACAATGAGTATCTGAATAATGAGAACTGTGTTTGA
- Protein Sequence
- MPISVFSLFLDETEAMPIIADPHDLKFATIERDEAKRELFRNNITTILESCTAYPFKYRKGAYMCFYCKNSFLDPTKLREHTHSEHPNPKPSKPRKYEPLKMDFTNIICKICGQDIEDYAMLKNHVTEHGMTIDLTHGESVLPYKLDGDVHYCQICGKQYEVFLTLHKHMNDHYQLFICEHCGKKFATAQRMVNHAITHETGAFTCTTCGKIFSSYSARYAHVSKVHKSNKRYKCPVCDVKFVSYKQRLKHLTIVHGQKPAAFPCPSCPKIFDLCSRRTAHIRHKHLQERNHVCSECGMKFFSNYELKEHLVKHGGERIYQCDVCKKAYARLKTLREHMRIHNNERRFICPVCGNSDTENDLEEIEKQNHITRRLNACTIVENTTVCPFRWSKNHYLCFYCDLNFPDLATLKKHNDGQHEKTNSIPILRGLKKMKKTDFVKIDFSNAVCRICGRTLDNIAETKRHLVEEHGKKINFECGDGVLPFKLMSGNFNCAICRVDCEEFKTLNQHMNIHYPHYICEQCGSGFMTPQRLKNHGHTHISGSHPCEICHKKFRSKNAKNDHYAIVHLKAKRHRCPHCFELFSNYFQRNKHLSSVHGQKLKEFKCSVCSRVFQASGKLGVHMKTVHLKLKRFACDVCEWQFYSKSELKEHMVKHTGKRAFQCTICKKFYARKYTLTEHMRIHDNDRRFVCAVCGSSFVQKCSLKHHTKTHHPNSITQISKDNEYLNNENCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -