Tvar005850.2
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028262.1:9213188-9221877[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0045 0.37 12.0 1.0 3 23 435 456 434 456 0.96 2 22 0.32 26 6.2 0.3 1 22 835 856 835 856 0.95 3 22 0.062 5.2 8.4 2.1 3 22 934 953 932 953 0.90 4 22 0.027 2.3 9.5 0.1 2 20 961 979 960 983 0.89 5 22 0.0091 0.75 11.0 0.2 3 23 1005 1026 1003 1026 0.97 6 22 0.014 1.1 10.4 3.2 1 23 1032 1055 1032 1055 0.94 7 22 0.12 9.6 7.5 0.0 1 23 1080 1103 1080 1103 0.90 8 22 0.017 1.4 10.1 3.4 1 23 1108 1130 1108 1130 0.97 9 22 0.026 2.2 9.5 0.3 1 23 1136 1159 1136 1159 0.95 10 22 0.00096 0.08 14.1 1.3 1 23 1171 1193 1171 1193 0.98 11 22 0.0013 0.11 13.6 4.0 1 23 1243 1266 1243 1266 0.96 12 22 0.006 0.5 11.6 1.1 1 23 1324 1347 1324 1347 0.97 13 22 0.0062 0.52 11.5 2.9 2 23 1372 1394 1371 1394 0.95 14 22 0.06 5 8.4 0.1 2 23 1400 1421 1399 1421 0.93 15 22 0.025 2.1 9.6 0.2 1 21 1467 1487 1467 1488 0.94 16 22 0.00014 0.012 16.7 0.9 1 23 1498 1520 1498 1520 0.94 17 22 8.1e-05 0.0068 17.5 0.3 2 23 1610 1632 1610 1632 0.93 18 22 1.1e-06 9.5e-05 23.3 2.1 3 23 1639 1659 1638 1659 0.98 19 22 0.048 4 8.7 0.7 1 23 1678 1700 1678 1701 0.93 20 22 0.17 14 7.0 0.0 1 23 1723 1745 1723 1745 0.97 21 22 0.018 1.5 10.1 0.9 1 23 1751 1774 1751 1774 0.95 22 22 7e-05 0.0058 17.7 0.5 1 23 1782 1805 1782 1805 0.96
Sequence Information
- Coding Sequence
- atgAGTGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAAGCGAATTACTGCCCGTTTTTCCTACCACCAGTTCCGATGACTGTGAACCTCACATCCTCGCCTCAAAAATCAAGGATTGTGTGTCTGTTGAGataacCGAAAATGACGACTTGCCGACTAATGTCTGCAGGAAATGCATGGATAATGTCAACAATTGGCATATTTTCAAGGATGTATGTGAAAGAACACAAACCAAGCTGATAGATCTGATTAACAAAGATGACAGCCTTCTAGAAGAGGTGAAAGTTAAAAATGAACCAGTTACAGATGATGCTTATGATGATGGGGTTGTTATTGATGGTTCTTACCCTGAAAATGAGCCTCAAAGTTCCAGCAAATTACAACCGGAAGGTCCACCAATTTTGGCTTCACTAGGACTGACACCAAGAAGTGACAAGACATGCATAGATCCCCGTATGGATTGGCATCGGGTGCATGCAATATTGAATATGGTACAAGATGACGAAGTTATCAATTCCCTGCAAACAAATGAAGAAAGTGACGTGGTACACTTCTCTGATCATGATTCTAATTCAGAATCAGAACTACAGGATCAAAATGATGACTTTTATGACTCTAAATTGAATTATAAgtgcaaaaataacaaaatcctATCCAAAACACCTACAGTTACAAAGTCACAGTCACATAAAGCTAAAGAAAGTTTGAATTttcgaaaacaaaaaacaatcccACCAAAATACTTTAAGAATGTTGAAGATGCTTGGCTACATTTCTTCTCAGAAGACTTACTAGAACAAATTGTGTCATCTACCAATGACCACCTCAATAAAAACAATGTATCAGATGACCGGACCAACATTACAGAAATTAAGAACTTGATtggtatattatatttacacgGTATAATGAGGCCAACACATGTGAAACATGCAGATCTATGGGACAGCGAATGTGGTGTGCCAATTGTTAAAAGCACCATGGATTACAACCGATTTTTGTTTCTCCTCAAGAATCTACGTTTTGAAGAACACCATGATCTATCTAATGTTCAATATGATCCATTGAGTCGGATTCGCAAAGTATTGGAAATCTTCGCTTTGAATTGCAGAACTGTTTTTGAAGGAGTAGAAAGCGAAAAGGAAGAAGACGATGAAGAGGAACATGtgaataatacaaataattccCTTGTAAAGATGTCAAACATGCCCGAAGTTTCTATCACAGTTATGCGTCCGACTGGTGAGACTTTACATGCCCGTCAAGGTATTCAACAAATAGCATCAAAAGACTGCCTAGTTTGTGGACGTAGCTATCGGTATTCTCATAACGCGAGGCGACATGAGCTCACCGCACATAGCTTTGATAGATATACTAACAAAACCGCACCGAAAAAGTCCCGGACACATCTACAGCCAAAGTTGAGGCCTAACCCATTCAATCCCAAGGCACGACTTATGCCGAACCCTATTAGCCACAAAatccaatttaaaaatattccaatTGTAACAGCATCCAAAGCAGGCCCCCCGAAAGCAATCCCAATCAAAACTGTTAATGCTAAAGCTTCTCAAAACAACTTGCCGTATCCCCTTCGTATTAAAGCCTTAAAAGACTTGCAGATAAAAAAGAAGGAACcacaaattttgaaaacacttTTGACAACAAAACCAGAAGTGTTAGTTTCTGAGCCAGAAATTTTAAATTCTGGACCAGAAAGTCCAGAAACTCTTATATCTGAACCAGAAATAGCGTCTTTCCAAGTTGAAACTATTTTATCTGAGGTAGACCCAGATGTTTATGATCAACAAGGCGATGATGATGCGGATGGTGAAGTAAATGACAGTCAAAATCAGAATTATGACACAGTCGATATGGATTCTGAAAATGAAATAGAAATTGCTCGCCAACGTGAAGAAATAGAAGAAGataaaaatgatgaaaatgAGGACAATGGCGAAAATTACAACGAAAATCATGATGAAAATATACAGAGTGATAATGACAAACACCACAACGAAGATACTGCAGATAGTCAAGAAAATATGATTTTAGGTGACAATATTCACATAAAATATGAAGATCAAGAAGACAAGGACAATGATGATAATCAGGACGAGAATgacgacgatgatgatgatgactatgtGCCTCCCGAAGGTCTCACTCCAGTGGTGGAAATCAATGAGGACATGCAAAATAATTCTTATCTGAGTGAAATGAATGAAGAAGAGGAGGGACTAGATGAAACAGCTGATTCTGGTGAAGCAGCCGATCCTAACGAAACAACTCCAGAAGGCGAAGAAAAACCAGTAAAGGAATTAGATCCAGATAAAATTTACGTGACTAAATCCCAAAGagattttataaacaaataccGTGATATCATCCAACAGATCAACACTAAACGATGCCTATGTTGCGACAGAGAACATCCTCGTAGGAAAGCGGTTAtacaacatttacaaaaaaatggaCACAAAGTTCCCAAACATACCTGTTACAATTGTGTCGTAACGTTTGGACATATTGGTGCTCTTCTTAGCCATATGCGATCGAACACATGCACAGATTTatggaaaataatttatgaCGAAAACGGTATCACAGATGATAACGTTATCGAAGACGAACCAGTGCCGGTAGACTTGAAAGTTCAGTACAAAGACATTTTCAACGCTAGGTCCTACTCTTGTAGACTCTGCCCTGCTAAATTCCAACTGAAACAATTTATCATGAAACACGTTCTAGATATTCACGAAGACGGACAATCTATGATGCCTCTGCATTGTATACACTGCAGAGTGAGGTTCAAAGATAAGAATTTGCTAAAGAAACATATACGCGTTGGAGATTGTACTGTAGAAATTTCATGCGATATGTGCGATGAAACGTTTAGAAATGTTCAACAATTTAACGACCATGCAGTCGCGGTACATGCTGGTAATCTTGATCCAGCCGCCGAAAACTCAAACAAATGTGTTGACGGTAGACCCACCGATTGCCCAGTGTGTGGAAAGAAGAATACAAACTATCCTAGTTTGGTGAAACACTTGAAAACTATACACGGCGAAGAAAAACCTCATTTCTGCAAACATTGCGATTTGAAGTTTGAACAAACCGCCGATCTTGATAAACACATATACATGGAACATTCTCATGGAAGTATGGGTGTTAACAGTGAACCTGACATGTCTCTTGTTAAAGAGGAGGCCGAAGAATATCACTAttcttgcactgaatgtaatgCGATTTTTGAAACAGTTGACGCATGGACTGACCATCAAGTCGCCGAACATAATCAGGTGGCACATCATTGCGATCAATGCGAAAAGAAATTCTTACGTCCCTCCGAACTCGCGGAGCATAAGAACACACACTTGCGGGTTAAATTCTATCCGTGCAGTTTGTGCTCTAATTCGTATAGTACTCCTCAAAAACTTGCTGAACACGTGCAACAGTTCCACCCTGGAGGAGGAAATGGGCCTACTGATTCTGAATTCTACTGTGACATTTGCATCAGATCTTTCAAAAGTCGCCAGGCTTATTCCAATCACATGCGCATACACGCCAAAGTACCGACGACAAACAGAAAACCTGGAGATCCTAAGAGTTTTGCTCCTCAAATTGTCGGCAAGCCAATTAAGTCTTATCCTGGCGTGCAACCGGGCTTTGTATCCTTTAAACCTAATTATAGTAACATTCCTAACGCTCCGTATTGTTGCGATATCTGTGGTAAAGGATTTATGCACAAGAAAAATATTTGGAAACATAAGAAAGTACTACACGCTGATTTATTACACGACAGAAACGACAGTGAAGAGAATACCATGCATGCCTCTACTGAAGAGGAGGAATATAATCCAGATGAAAATGGTGCGATACTTTCGACACCgcaatttaatagttttaatttcgCAAACTTTAATAATTCCCAACAATCTCAGTCAGAATTACCTTACTCCTGTGAGTTGTGTTATCAAAGATTTCCAGTTAAAAATGCGTTGTGGAAACACAAACGTAATAAACATGGCATTGTACAACCTGGCTCTGAAAATCAAAGTCAGGGAACTACTGAAAGAGGCGATACGAGTAGCAGATCAAGTTGTACAatctgtaaaattaatttttcagACAAAAAGTCCTACTATCGCCACAGAAAGAACTTTCACAAAACTTCGGTTCAAATGTGTAAAATATGCGGCAAACCGCTTAGTTCTACCGAATTATACGACCACTTGAGGGCGGCACATTCTCGCGAGCTACTCGGTTACAACGCTACTCAGGCCACCGGCAGCAAGTCCCAGGATACTTCGCAAGACGTGGACGGTGGTGAATACGAAAATGATCAAGACGCCGGTGATGCGATCGTTGATTATCAAGCTAGATACCCATGTGAAACGTGCGGAAAACAGTTCATAGGAATGCTAGCACTGCAGAATCATCAATGCGTTAATCAGCTACCACAGCAGCCCCAGACATTCGAATGTGAAATTTGCCATAAAAGTTACACTTCTATATCTGCGTTAAAAAGCCATCGTGGATGGCATCTGCGTTCTCCAGACGGTAAAGCCGCTGCCAACAATTCAGGACTATGGATGCCACACCACAAGGTTTCACATAAAGTCAGTAAGCATGAGATTGTCGACGCATCTCAACTAGCCCGCGTTCAACATTCGACGCCGAATTCAGCCTCCGTTGCCAAAAGAAGACTGCCTCCAGAGGTTGAGGTAACTGTAGTCAACCCAAACAAAAAGCTACGATCCGACGACTCGATCGAAACGGATCAGCAGAGTACAGGACCTCTCGAAGACCGTTACTGTAATATTTGTGACAAAGAGTTTACGAAGCGCGCAGCGTACCAACGACACATGGACGAGGTTCACCAACCGAACTCTGTCTTTTGTCCGGTCTGCAAGAAAAGCTTCACGAGAAAGTCCACTTTACTTGTTCACATGAAGAAACATTACGAAAGCGGTGAGGGCAGTTCATCTGCGACAGGTTTAGGGGATGAAGAGTTTCATGCTTGTGATCTTTGCGGGGCACAGTACGATAACGCCGAAGCATTGAGATCTCACAAAGTGAGGCACCACGCAGAAGAAGAATCTGGTGAGTCTGAAGACGATGGGAACGGTGTCGTGGATCCACCGGGTGAATTCACGTGCGCCCAATGCGGAGACGGAGTGGCCACACCACGTGACCTCATCGCCCACCGAACGATGCATGCGACTCCCACAAAATTCTTCTGCAACATCTGCAAAGTGTACTTCACGAAGGCCATTGATCTATCTACGCATACGAGAGCTCGACACTCGGACAACGAAAAAGTATTCTTTCCCTGTGCCATGTGCGACCGATCCTATATGAACAAGAAGAGTTTACAGAGACACATAGAAATGTCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRSELLPVFPTTSSDDCEPHILASKIKDCVSVEITENDDLPTNVCRKCMDNVNNWHIFKDVCERTQTKLIDLINKDDSLLEEVKVKNEPVTDDAYDDGVVIDGSYPENEPQSSSKLQPEGPPILASLGLTPRSDKTCIDPRMDWHRVHAILNMVQDDEVINSLQTNEESDVVHFSDHDSNSESELQDQNDDFYDSKLNYKCKNNKILSKTPTVTKSQSHKAKESLNFRKQKTIPPKYFKNVEDAWLHFFSEDLLEQIVSSTNDHLNKNNVSDDRTNITEIKNLIGILYLHGIMRPTHVKHADLWDSECGVPIVKSTMDYNRFLFLLKNLRFEEHHDLSNVQYDPLSRIRKVLEIFALNCRTVFEGVESEKEEDDEEEHVNNTNNSLVKMSNMPEVSITVMRPTGETLHARQGIQQIASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKTAPKKSRTHLQPKLRPNPFNPKARLMPNPISHKIQFKNIPIVTASKAGPPKAIPIKTVNAKASQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEVDPDVYDQQGDDDADGEVNDSQNQNYDTVDMDSENEIEIARQREEIEEDKNDENEDNGENYNENHDENIQSDNDKHHNEDTADSQENMILGDNIHIKYEDQEDKDNDDNQDENDDDDDDDYVPPEGLTPVVEINEDMQNNSYLSEMNEEEEGLDETADSGEAADPNETTPEGEEKPVKELDPDKIYVTKSQRDFINKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYDENGITDDNVIEDEPVPVDLKVQYKDIFNARSYSCRLCPAKFQLKQFIMKHVLDIHEDGQSMMPLHCIHCRVRFKDKNLLKKHIRVGDCTVEISCDMCDETFRNVQQFNDHAVAVHAGNLDPAAENSNKCVDGRPTDCPVCGKKNTNYPSLVKHLKTIHGEEKPHFCKHCDLKFEQTADLDKHIYMEHSHGSMGVNSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSLCSNSYSTPQKLAEHVQQFHPGGGNGPTDSEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKSFAPQIVGKPIKSYPGVQPGFVSFKPNYSNIPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLHDRNDSEENTMHASTEEEEYNPDENGAILSTPQFNSFNFANFNNSQQSQSELPYSCELCYQRFPVKNALWKHKRNKHGIVQPGSENQSQGTTERGDTSSRSSCTICKINFSDKKSYYRHRKNFHKTSVQMCKICGKPLSSTELYDHLRAAHSRELLGYNATQATGSKSQDTSQDVDGGEYENDQDAGDAIVDYQARYPCETCGKQFIGMLALQNHQCVNQLPQQPQTFECEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPHHKVSHKVSKHEIVDASQLARVQHSTPNSASVAKRRLPPEVEVTVVNPNKKLRSDDSIETDQQSTGPLEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCKKSFTRKSTLLVHMKKHYESGEGSSSATGLGDEEFHACDLCGAQYDNAEALRSHKVRHHAEEESGESEDDGNGVVDPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFTKAIDLSTHTRARHSDNEKVFFPCAMCDRSYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -