Tvar015681.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- Mblk-1
- Assembly
- GCA_030269945.2
- Location
- AP028274.1:2106834-2114266[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-15 8.3e-12 45.3 0.0 1 38 91 129 91 132 0.95 2 2 6.1e-19 9.8e-16 57.9 0.0 1 43 303 346 303 348 0.95
Sequence Information
- Coding Sequence
- ATGAAACTACTCATAAGAACGACAGTTGCCCCTATTGGTGAAGAAAACCTGCAAATTAGAGAAAGCCTTACCGTTAAAAAATGGTTATCAGAGAGCGACAAGACAGCAGCTCCATCGTCTCCGAGTCCAGCTGAACAGCCTTTGGACCTGAGCGCCAAGTCTACTTCCAGCACCAGTGGAACTCCACCTCCAGACCCTAAGTTCTTGGATAACCGATTGCGACGATCGGCGTTAGATAGTGCATCAAATAGTACAGGCCGGCGCACGTACACGGAAGATGAATTACAGTCCGCTCTACGTGACATCCAGTCCGGGCGACTCGGGACCCGGCGGGCGGCTGTGCTCTACGGCATCCCGCGGTCTACGCTACGCAACAAAGTCAATAAGTTCGGTCTCCTCGCCGACAATCACGACTCGGACCAGGACAGCGACCAGGACCGCGCTGAATCTCCTCCCTCGGTCATCCTCAAGATACCGACGTTCCCGCCGCCTGATGACAAGAGCTCGTCCCCTGCTACACCTATCAGCACCCCGATCACGCCCATCACACCGCTCGTACCGCAGCTTCAGCCATCGCTAAACCCGACCTCAAATCTGTTGTTGTCGCCATCCGTGTTCGCGGACCCACCTGCCGGCTCGCAACACATCTTCACGTCCTTGAATGACGTCATAGCGAAGAGCATCAGTCAGAAGTTCCAGCAGCCACTCGACGCTCGTGCGCACCAACCTGATCTATCGTTTATGAGAGCGCCTGACGCTCGCCACGTGTCCGTCATCAAGAGTCAAAATGACAATCAAAGAAACTACTCCATGCCGAGTAATTCTAAAGTGCCGACGAACAACAACGGACAGCCTGCTGCTGGCGGCAAGGGCACGCGACCCAAGAGAGGTAAATACAGGAACTACGATCGCGACAGTCTCGTCGAAGCTGTGAAAGCAGTGCAACGAGGCGAGATGTCCGTGCACCGCGCCGGGTCTTACTACGGCGTGCCTCATTCAACATTAGAGTACAAAGTTAAAGAAAGGCATTTGATGCGGCCTAGGAAACGCGAACCGAAGCCTCCACAGGACACAAAACCGCAGCCACCGAAACCTCCTCCGCCCAAACCTCCAGGCAAGCCGTTTTCCAACGGTCTCAACGGGCCTGACACGCCAGCGTACCCGACGGGCTATCCATTCTGGGCTGGCCCCGGCTTCGCGCCACCGCCGACACCCGACCTGTACGCGTCCCACATGATGCGGCGTCTCCGCGAGGAAGCTCCTCCGCCGGCGAACGGCTCGTTCTTAGAAGGCATCATTCGCTCGAGCCTGGAGCGTCCCGGCGCGGCGCTGATGCAGCGGCTGGCGAGCGAGTCTCCGAGCCTGGTGCGGCGGCTGGCGGCGGACGCGGAGGAGCCGGCGGCTCGGCGCGCGCGGCTCGACAGCTCCGACCACGCGCTGGCGGCCGACATGCGCGAGGCCGTGCAGCGGCTCCGCGCCGACAAGCTGCGGCCGCGCAACGGCACCCCCGCCCCCAGCCCGCCGCCCGCGCCCCCCGACCGTGTCTAA
- Protein Sequence
- MKLLIRTTVAPIGEENLQIRESLTVKKWLSESDKTAAPSSPSPAEQPLDLSAKSTSSTSGTPPPDPKFLDNRLRRSALDSASNSTGRRTYTEDELQSALRDIQSGRLGTRRAAVLYGIPRSTLRNKVNKFGLLADNHDSDQDSDQDRAESPPSVILKIPTFPPPDDKSSSPATPISTPITPITPLVPQLQPSLNPTSNLLLSPSVFADPPAGSQHIFTSLNDVIAKSISQKFQQPLDARAHQPDLSFMRAPDARHVSVIKSQNDNQRNYSMPSNSKVPTNNNGQPAAGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPPQDTKPQPPKPPPPKPPGKPFSNGLNGPDTPAYPTGYPFWAGPGFAPPPTPDLYASHMMRRLREEAPPPANGSFLEGIIRSSLERPGAALMQRLASESPSLVRRLAADAEEPAARRARLDSSDHALAADMREAVQRLRADKLRPRNGTPAPSPPPAPPDRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00113243;
- 90% Identity
- iTF_00236563;
- 80% Identity
- -