Tvar006913.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- -
- Assembly
- GCA_030269945.2
- Location
- AP028263.1:11560934-11566670[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8.6 1.4e+04 -3.4 0.1 30 37 75 83 75 85 0.79 2 5 6.9e-12 1.1e-08 35.3 0.0 2 39 140 178 139 182 0.90 3 5 5.1e-12 8e-09 35.7 0.2 4 39 196 231 193 234 0.92 4 5 2.7e-13 4.3e-10 39.8 0.1 2 45 249 293 248 293 0.95 5 5 7.5e-19 1.2e-15 57.6 0.1 1 42 300 342 300 344 0.96
Sequence Information
- Coding Sequence
- ATGCCGAGCAACactttcaatttaataaatcaTCCAGTACAACCATCGCAAGAAGATCGAAACTTTTATTCTCATCCCTACTTGCCCGATGAAGCAAATGCTTTGGAAGAGTTGGTACCGCTAGCGCCGGCGGGACCCACCGCTACTCCAGTCTGCGTGAAACAAGAACACGAACACTCGCCCGTACTCATGCTTGAGACTTTAGAACCGGCGCATAACAcgAATTCCACGTTACTAGAGAGACACCTCTCTCTCCTGACGCACGAAACAAATGACGTTCAAGAATCTAGCGACTTCATGCCGTTGCTCAATATCAAAGATGAACCAATGTCTGAAGGAGAACAACAACATCAAAGCGGTGATGACACCAGCGACTCTCAACCCGAGCCCGCCGCGCGCAGCCCCAAGAGCTGGACACAGACCGACATGAACAACGCCCTCGACGCGCTACGGAACCACAACATGAGTCTTACTAAGGCATCAGCTCTATTCGGCATCCCGTCCACGACGCTGTGGCAGCGCGCGCACCGCCTCGGCATCGACACGCCCAAGAAGGAGGGCGGCTGCAAGTCCTGGAGCGAGCGGGACCTCTCCCGCGCCCTGCACGCCCTGCGCGCCGGGACCATTTCCGCCAACAAGGCCAGCAAGGCTTACGGTATACCCAGCAGCACGTTGTACAAGATAGCTCGTCGCGAGGGTATCCGCCTCGCCGCCCCCTTCAACGCGGCCCCCACCGCCTGGCGCCGCGCCGACCTCACGCACGCACTCGGCGCGCTGAGGACCCGCGCGCTCTCTGTGCAGCGAGCCGCGGCGTTGTACGGTATACCCACAGGTACCCTGTACGGTCGGTGCAAGCGAGAAGGCATCGAGTTGTCTCGCTCCAACCCGACGCCGTGGTCCGAGGACGCCATGGCGGAGGCGCTCGAAGCTGTCAGGATCGGTCAGATGTCTATAAATCAAGCGGCCATACATTACAACTTGCCTTATTCATCGCTGTACGGACGATTCAAAAGATGCAAATATCAGAATGTCCAACAAATCCCTCAGACATCCATCCAGGAGTTCCACACCTCGGAGTCTGAGTACTACTCACACACACATGAGCACACACATATGTACACACATGTGGACCACCAGTACTACCAACAGAACTATAATACTGTTATCACTTGA
- Protein Sequence
- MPSNTFNLINHPVQPSQEDRNFYSHPYLPDEANALEELVPLAPAGPTATPVCVKQEHEHSPVLMLETLEPAHNTNSTLLERHLSLLTHETNDVQESSDFMPLLNIKDEPMSEGEQQHQSGDDTSDSQPEPAARSPKSWTQTDMNNALDALRNHNMSLTKASALFGIPSTTLWQRAHRLGIDTPKKEGGCKSWSERDLSRALHALRAGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLTHALGALRTRALSVQRAAALYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMAEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQNVQQIPQTSIQEFHTSESEYYSHTHEHTHMYTHVDHQYYQQNYNTVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -