Tnig005497.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- stc
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010002112.1:1685-6675[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1 5.3e+04 -4.3 1.6 15 19 464 468 463 468 0.81 2 15 0.08 4.2e+03 -0.6 0.1 4 10 497 503 496 504 0.94 3 15 2.8e-07 0.015 16.8 12.7 4 18 514 528 512 529 0.94 4 15 2e-09 0.0001 23.7 15.3 1 19 565 583 565 583 0.98 5 15 0.23 1.2e+04 -2.1 1.8 1 10 592 601 592 601 0.78 6 15 7.6e-08 0.0041 18.6 13.8 1 19 621 639 614 639 0.91 7 15 0.28 1.5e+04 -2.4 0.9 5 10 668 673 668 673 0.95 8 15 3.4e-06 0.18 13.4 13.5 4 19 686 701 679 701 0.86 9 15 0.74 3.9e+04 -3.7 2.0 5 10 730 735 730 735 0.93 10 15 0.00093 49 5.6 8.2 1 11 741 751 741 752 0.96 11 15 2.5e-10 1.3e-05 26.6 12.2 1 19 768 786 768 786 0.98 12 15 1 5.3e+04 -4.2 1.5 6 10 815 819 815 819 0.97 13 15 1 5.3e+04 -6.9 9.9 10 19 833 843 825 843 0.69 14 15 9.9e-06 0.52 11.9 18.5 1 18 879 900 879 904 0.91 15 15 0.00026 14 7.3 12.3 1 19 911 930 911 930 0.96
Sequence Information
- Coding Sequence
- atggcTACATGGGACGGTTCATATCAGGGACCTGACGGTTACTACGTTTACGCAGATCAAAACAATTCTTCATCAAATCGGAATTATTTTCCCcaaaattctgaaagtacaTCAACTCAAAGTAGATCACCCTGTCAATATGGTACAAATCCTACTACAACATTTGAGCAAAATGGTACAATAGTTTATGATCGATTGGAAAATAGCAGAGCTCTTCCTCAAGTTTTAAATTCCCAATTGACACGCAATACAAATAATGCAATTCAAACAACAGATGGTAACAACTTTAATGTTTCTCAAAGTTTTTACGAAAATAGTAGGCACGTGCCTCAGATGCCATCGTTTTACTGTCGGACTGGCAATTATCAAAAAGGAAATACGCGAAAAGGATTTTCATTTGATAACGTAGTAGAAAATTCTAACCTGCAAGTTACAGCAAATGAATTTGTGCCCAGTCGAAGAAATATACCTAATACGAGTAGCAGTATGCTTCCAGAAACTGCATCACATCAAAATCAAGATTTAGAGAATAAAGTGAATGTTTTTTATGCTGATAATAGATCTAAATACAGTgataagagaaatgaaaataaaaaagagcgaATAGGTAAGAAAAAATGGGAACCGCGAAGTAATCAATTTCAAAGACCTGAGAGAATGCAAGGTAAATATGACAAAAGTCAAAATTTTAGCAAGttccaaaatgaaaaatcatatcCTCACTACAGGAATTACTCTGATAAAACATACAATAGCGGGAAAAATACTCGATTAGGAAAGGAAGATGCAGAAAGCACAGTCGTTGAAAATGGTATGAATCATGTACAAAATGAAAGTATTAATGAGTCTCAAGATTCACATAATCaacataaagaaattaatacaaatacagAGCaggaaaatgtacaatttccaaaaataacaaaattttattcaaataatagtCGCCAAGAAAGATATGATAGGAAAGACCGTTATGGTGATAAATACAGTCCTAGAgataaaaaaactaataatcaAGATACCAACTTCCGAAGTGGTTATAACAAATTTGATCGAACAAGAGACTGGAATAAAGATTTTCTTGGAGAAACTCGAGAAAGAGATAAAAGAGATTCATCAGATTGGAGACAGAGGGGTGATAGTGTAAATAAGTGCAATTTACAGAAACgtacttataataaaaaatacgaaattgaTGACGATGCAAGTCAAAGAGAGAGATTGACAGAACAATTGAACCGGGGTCAATTAGAATGTTTAGTTTGTTGCGATTACATCCGTCAAAATGATCATGTATGGTCATGTTTGAATTGTTATCATGTTCTGcacttaaaatgtataaaacagtGGGCAACATCATCTAAAGGTGAAAGTGGCGACTGGCGTTGTCCAGCTTGTCAAAATGTGACTTCAGGAGTGCCCGAGAATTATTTCTGTTTCTGTGGCAAAACATCTGCTCCTGAATGGAATCGTCGCGAGATCGCCCATTCTTGCGGCGATGTTTGCGGCCGTGCTCGATCGGTGAACAACTGTGTGCACAAATGTACTTTGCTGTGTCATCCAGGATCGTGTCCACCTTGTGTCACAATGGTATCGAGAAGCTGCGGCTGTAGTAGAGTAACACAAATCCAAAAATGTGGCACTGCGACGTTATTTACATGTGACGCCATTTGTGATAGGGTTCTCAACTGTGGAATACATAAATGCGAAAGTGTATGCCATCATGGAAGTTGCGAACCTTGCAGCAAAGAAATAACACAAAATTGCCACTGCGGAAAGCACAATCGTATCCAAACTTGTATATCTGATTTGCCACCAACTTACTCATGTGGTAATACTTGTGGAAAGACATTAGATTGTAACAATCACCAATGTAAGGATGTTTGTCATCCAGGATCTTGTAGACCTTGCTCTTTAAAGGTAGAGACAGTAACACATTGTTGTTGTGGTCAAACACCATTATTGATTAAAAGAGAAAGTTGTTTAGATCCAATTCCCACTTGTGATAAAGTCTGCAGCAAACGTCTCAAATGTGGCCAACCTAGCAATCCTCATTCTTGCCAGGCAAATTGCCACGAAGGAGACTGTCCTGAATgtcaattaataacaaaagtCAGATGTCGCTGTGGTAATATGGATAGGGAAATTCCATGTATAGAATTGACAAGTAAAGCTGATGATGCACGTTGTGAGAAGAAATGCACAAAGAAACGATCTTGTGGCAAGCACAAATGCAACCAAATGTGCTGTATAGACATCGAACATATTTGTCCATTACTTTGCTCGAAAACATTAAGTTGCGGAAAGCATAAATGTGAACAAACTTGTCATAGAgGTCGCTGTCTGCCTTGTTGGCGAAGTAGCTTTGAAGAACTTTATTGCGAGTGTGGAGCTGCTGTGATCTATCCACCAGTTCCCTGTGGCACAAGGCGTCCAGTATGCGAGAAACTTTGCTCGCGGGTACATTCTTGCGGCCACGAAGTTCTACATAACTGCCACAGCGATCCAACCTGCCCCCCATGCACTGTTTTAACGAAAAAGTGGTGTTATGGTAAACATGAGCTTAGGAAATCTGTTCCATGTTacatgaatgaaatttcatgtgGTTTATCATGCAATAAACCTTTGTCGTGTGGTCGTCATAAATGTGTTACCACCTGTCATCCAGGGCCATGTGAAAAACCTGGGCAACCGTGTACTCAGCCTTGCACAACTCCTCGGGAACTCTGCGGTCATGCATGTGCCGCTCCATGCCACAATGATAAATGCCCAGATACACCTTGCAAAGAAATTGTTAagGTTACGTGCCAATGTGGACACAGAAGTACAACTAGATGTTGTGCAGAAAATGCAAAAGATTACCAACGTATTGCTAGTGGAATATTGGCTAGTAAAATGGCAGACATGCAGCTGGGACACACTGTCAATTTAGAAGAAGTGTTTGGGCAAGGAGCAAAAAAGCAGAACCAATGGAAGACATTGGAATGTAATGAAGAGTGTAAACTGATAGAACGGAATCGCAGACTGGCACTTGGCTTGCAGATTGTCAATCCAGACTTGAGTGGGAAGTTGATGCCAAAATACAGCACTTTCATGAAACAATGGGCCAAAAAAGACGCACACTTCTGTCAAATGGTGCATGATAAACTAAGTGAACTCGTGCAACTGGCGAAAACATCGAAACAGAAATCCCGTAGCTATTCTTTTGAAAGCATGAATCGTGATAAGAGACACTTTATTCACGAATCTTGTGAACATTTTGGTTGCGAAAGTCAAGCATATGATGAGGAACCGAATCGGAATGTAGTCGCTACAGCTGTGAAAGATAAgTGCTGGTTGCCTAGCTATAGCTTACTAGAAATGATGCAGAGGGAAAATGGTCAGCGTAAAGTACCAGGACCAATGCTCAATAAATTAATGCTCAGaaGCTCAGAAACTGTGCCGTTAAGTTCGAGAAAAAACATTAAACTGCCACCACCTCCTGCGATATCGCCATCTAGATCTCCGGAGCCTGAAATCGACTACTTTGACTATAAGGGTTGA
- Protein Sequence
- MATWDGSYQGPDGYYVYADQNNSSSNRNYFPQNSESTSTQSRSPCQYGTNPTTTFEQNGTIVYDRLENSRALPQVLNSQLTRNTNNAIQTTDGNNFNVSQSFYENSRHVPQMPSFYCRTGNYQKGNTRKGFSFDNVVENSNLQVTANEFVPSRRNIPNTSSSMLPETASHQNQDLENKVNVFYADNRSKYSDKRNENKKERIGKKKWEPRSNQFQRPERMQGKYDKSQNFSKFQNEKSYPHYRNYSDKTYNSGKNTRLGKEDAESTVVENGMNHVQNESINESQDSHNQHKEINTNTEQENVQFPKITKFYSNNSRQERYDRKDRYGDKYSPRDKKTNNQDTNFRSGYNKFDRTRDWNKDFLGETRERDKRDSSDWRQRGDSVNKCNLQKRTYNKKYEIDDDASQRERLTEQLNRGQLECLVCCDYIRQNDHVWSCLNCYHVLHLKCIKQWATSSKGESGDWRCPACQNVTSGVPENYFCFCGKTSAPEWNRREIAHSCGDVCGRARSVNNCVHKCTLLCHPGSCPPCVTMVSRSCGCSRVTQIQKCGTATLFTCDAICDRVLNCGIHKCESVCHHGSCEPCSKEITQNCHCGKHNRIQTCISDLPPTYSCGNTCGKTLDCNNHQCKDVCHPGSCRPCSLKVETVTHCCCGQTPLLIKRESCLDPIPTCDKVCSKRLKCGQPSNPHSCQANCHEGDCPECQLITKVRCRCGNMDREIPCIELTSKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHICPLLCSKTLSCGKHKCEQTCHRGRCLPCWRSSFEELYCECGAAVIYPPVPCGTRRPVCEKLCSRVHSCGHEVLHNCHSDPTCPPCTVLTKKWCYGKHELRKSVPCYMNEISCGLSCNKPLSCGRHKCVTTCHPGPCEKPGQPCTQPCTTPRELCGHACAAPCHNDKCPDTPCKEIVKVTCQCGHRSTTRCCAENAKDYQRIASGILASKMADMQLGHTVNLEEVFGQGAKKQNQWKTLECNEECKLIERNRRLALGLQIVNPDLSGKLMPKYSTFMKQWAKKDAHFCQMVHDKLSELVQLAKTSKQKSRSYSFESMNRDKRHFIHESCEHFGCESQAYDEEPNRNVVATAVKDKCWLPSYSLLEMMQRENGQRKVPGPMLNKLMLRSSETVPLSSRKNIKLPPPPAISPSRSPEPEIDYFDYKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -