Tnig005883.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- -
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010002345.1:5218-13496[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0056 1.2 11.2 0.6 2 23 1098 1120 1097 1120 0.90 2 12 0.21 44 6.3 0.2 2 23 1154 1175 1153 1175 0.96 3 12 3.1 6.4e+02 2.6 2.4 3 21 1332 1350 1331 1351 0.96 4 12 4.5 9.5e+02 2.1 0.4 3 23 1372 1392 1370 1392 0.95 5 12 0.069 15 7.8 0.7 1 21 1470 1490 1470 1491 0.93 6 12 0.067 14 7.9 0.8 1 19 1532 1550 1532 1556 0.90 7 12 0.0029 0.62 12.1 3.3 1 23 1575 1597 1575 1597 0.97 8 12 0.0095 2 10.5 1.1 1 20 1650 1669 1650 1672 0.95 9 12 0.0023 0.48 12.5 2.0 3 23 2060 2080 2058 2080 0.95 10 12 0.56 1.2e+02 5.0 0.1 1 23 2438 2462 2438 2462 0.93 11 12 0.022 4.6 9.4 0.0 1 23 2473 2498 2473 2498 0.96 12 12 0.00035 0.073 15.1 0.7 1 23 2500 2522 2500 2522 0.98
Sequence Information
- Coding Sequence
- ATGTCGGGTGAATATCCTGAAGTACCAACTGAAACAGAGCCATTAGTTTCTGAGGCACTGGAACCAAATATCCATAGTGTTGAAACTGCAGAGCATTCAATGGCTGAAAGTACAAAATCATCATTGTCTAAAAAGAAGAATACTAATACTCTGTTTGCAGAAAAGATGAGAAATCGGAAGAAAGAGGCAGAAGAAAGAATTAAGTCTGTCTCACCGGAACAAACTTCATCTTCATGTAAAACAGTCACAGAAGAGGTAACTCAGGTTGTAAAGAAATCTGCATCACAGTTGGTCAGTGTGAAAGATAAGAATCGTGTAAGACGCAGAAATAGTCAATGGAGTAAAGGttttgtagttaaaaaaaagaaatacttcagTACATCCCGACAAGCAACAGATACGTCAAAATCAAATGGCGAAACAGTCAAGATATCACAGAAAACTAAAAAACCAGTTATGATGCAAAATGGCACAACACAATCAAATACATCGAAGATTGAAACAGAACAAAAAGAAACTGGCGAAAGTAGCAAACTAGACATTCATATGGAAGTAGATGAACAAGAGGAAATGCCAGTAAGAATGACAAGACGTTCCCGTTTATCAAACAAACTAGAAAATAAAGAAGTTTTAGAATCTGTAATTGCTTCAtctgaaataattcaaaactctAGCTGCAGTCGTACTGAACCTTTTATTGGGAAGTTAAGAacaaaggaagaaagaaaaatggttatagataaagaatttaatataaGCTCTTcacttgtaaataatatttcgagCATTCCAAATTCTGTTCCTACAACAGATTGTGTACCATCTAATGCAAACACTTTGAAAAGCAATGTTATAACTTTACCAAAAAAGGAAAACCCTGGTACCTCGAAGAAAGATGCTTCTGACGTAGTTAAAGATGTGTGTACAGAGAAAAATCAAATGCCacaagagaaaaaagaaacacctAATGAAAAAAACGAAGTATTTAAGGAAACAAGTAGCAGAACCAATGTTAGTAGTACACCTGTTTTTGATAGTACAAAACAAATAGAGGAAAAGCCTGAACCATTAAAAACACTCCAGGAAGTTCAAGAAAAGAGTGTAGACCATGCGGAATCTATTTCAGGAAGTAGCTCTTCATCTGCAGAGAACATAAagaaaacaatgacaaaaaaattcaataaaaccaAAGAAGATGATAAAGAAGTAACAAGTGAAGATTCGACTTGCAGACGTACAGAACCTTTTGTGGGTAAAAGAGAGATTAAACCAACATCATTACGGGTTAGTGAACCTCAGAAAGTAGAAGAaccaaatgaaaaagaaagtactaaagaaaataaaagtataaaagaaaCTGAAAGTACACAAGAAATTGAATGtataaaggaaaatgaaagTACGAAAATAACGGAATGTACGAAAGAAAGTGAAAGTACGAAAATAACTGAATGTGCAAAAGAAGGTGAGCCTACAAAAGCAGATGCCCCGTTAATTGCAGTCAATGAACATATTGATGATAATGAAATCATGTCTTTACCAATGGATTCCACAAATAAGGATGAGGAATGGAGTTGCAAGCGTACAGAACCATTTGTAGGAAAGGTACAACGTCATGGTTCTAGTATGTCGGTTGTTTCATCTAGACTACAAGGTCAACCTGAGGCAGTTGTTGAGGAGCCGGTTTTTGAAGAGCCAGGATGTAGCAGAACGATGCCTTTTATTCGACCTCATCTATCTGCAGAATTGAATACAATATATGATAAACAAAGAGattctaaaataaatgtagCAGTGAAAGTGCCTGATGATAATATTGGTGGTAGTGCAAAAGAAAGTAATAGTACTTTGACAAATTTCAAGAAACGTCCAAAAACAcctaacaataatattaatgaagaaatgTCTGCacctaaaaaatttaaatcttcaAAGAAGATAGGAAATAATTCTGACTGTGGCCCTTCTCATTCATCTGATGCAAATTCTACATCAACAAAAACAACACCATCAAAGGGAACAACTATTTGTGGAATGTTTTCCTTGAATTGTACAAAGCATGCCCATCATCATGatcaaatcaataatttaaatacatctgctttaaaaaagtttgaaataagaTTATCAAAACTTGAACACAGTCAAAATCCTGAAGTTAAACAATGGCTTTTGATGCAGAAGCAACGAAAGAGGCGACGTGTATCTTCTAGCAGTtacgaaaataatcaattatgtaataatgaaCCAAATACTAAAACAATCAGGAATTATCAGACTCCAAGTTCTATGAACGAGACCTTTGCTGGGTCTGTACCACGTGTTATTGAATCTTCTGAAGGGAAAAATATTCAACCTCACATCACATCAATTCAAACAGTACCTTCAGACATTTCTTCatcaaatgataataatatttcaatgacAGAAGTGACACAAATATTATCAGAGACTCCAAAAAGAGCACCTTCCAAACGTCGTCGAAAATCGACTTCAATATTGAACTCTATTTCGAAAGAAGATCTAAAAGACAAGCACAAACCATCTGAAATAAAAGACTTAAAAGTTGAATTGATAAGACTAGAAACAGTTCAAGGCTCTTTTGATAATGATTATTCTGCTAGTGAAATCGAAAGCTTGACTAAAAAGTATGTCGACTTCCTTATGAATTCTAATTTTTCATGTCAAATGTTGCGGAGATCTGTAAGAAATGTACAACGTACAGAAGATTCGGATGATGCGTTTACTGAGGAAGACTATTCTGACAATTTGGTGCCACGGCCTAGGACGAGCAGTCAAGCACGTGATGACTTAATTGCTATAGAAAGAGATGCTCTGTATGACGATGCTCAGACCGACGATTGCTCTGATATAAAACCTTTAATTATACATGCTTCTGATGTATTTGCTTATGATAATCGGATTATTGATCTCGCTACTGAGGAAGAGGAAGAAGCTTCTGAAATGATGACCAAACACACAAATGTAGATCCTTCAGTACTTAACAATAACATTTCACACCAGTCATTATCATCTGATTCAGTCATGAGTTCTTCAACCCACCATGCAATGAACCAGGAATCTAGGAATAAAGCAGCTGTACAAATTTCGGATGTCCTTCACTCCTCcgcaaatattagaaataaatcgaaaaagaGTACTAATTCGGACAGTGCCAGTATTGATAAATCTATTACATTGAATGAAGAGTCTTTAAGTAGTGAACCAGAGTCCATGACTGATTCGTCCAGTCAAGCAAAACGACGACAAATCCATGGTGTTAATGTTATCAAGTGCacaaaatgtgataaaatatttgtgaatGAAAAAGTTTTACAAATCCATTTAGTACATGTTCATAAAGAACACaaagtgaatgaaaatgttACTACTAAACCACCTAAACCAAAGAAACAAGTTACTTTGACTCGTCGAAAGTTTACTTATAACAACAGTCTCGAGTGTAATGTTTGTTCAGCTGTTCACGCAAACAAAGAGCAACTGTTTGAACATATAATAACGCATACACCAACAGAATTGCAGAATGCGTGTGACTCAGCGCTAGAAAAACAGAATCGCAAAGAAAATTCTAAAGATAATGGAACTGCAGATGTCAATAGCGATTCCTCTACTCAGGCAGAAAGCAATAATGTAGAAGCAACATCCACCGATATACAGGCAAACTGCAATGATGTTCAATCTAACGCCAATGATGTAAAAGCAAAAGCAAATGAAGTACAATCAAATTGTGAAAGCTTGAATCAAAATTTGCAAGAGGCAACTCCAGAGGTTGTTGAATTCACACAAATAAACTTGACACCGGAACAGAATTCTGTGCAGAATTTTGTAACAGCACCTGTTACTAACAACCCTGATGAGCAGTTAGTTACAAGGCAGACGGACCAAGTCAAACCGATTACTGTTTGCCCTTGCCATAGAAACGAAACTTCTGAGCTCAATAGTCTAGATTTGCAAATCGAAATGGTTCTTTTGTGTAAAACTTGCAGAGTTTTGTTTCGTAGAAGAGACTGCTTTGAAATTCATTATCGTAATAGCGAAGAATGCCAAAAAGCGAGATCTGACTATTTGAATGTTAGAATGCCAAAACTCTTTTGCAGCAGTTGTCGTTTTGTATTGAATTCACTGCCAGAGATGCGTAAACATTTAGAAATGCATGCCCGACAAAACTCTCAGGGAACTGTGACGTTCTTATGCAATATTTGTAAAGTGGCCTTCTTTGgtgttggaaatattttttacaaccACTGGTTTAGCCACAACAAAGAACCTCTGTTTGTGGCTAGTCGATACAGTTTTCCCAAATTATCTGTTGTATCAGTGAATGATGAAACTTCTCCAACGATATGTGGTCTAAGAAATAGGGATGGATTCTTTTATGTTGCTGAACACGTTTGTCGAACATGCAGAGTACCATTTGGTTCAGAATCTGAATTACGCAGGCACCATCTTTCTCCCTGCAGTGTACCTGAACCTCCTGTAGTAGAGCTTAAAACGGTTAAGGACAAGCCCAAACCACTGATAAAGATACATAATCCGCAACCTACTAGGACGACGAagttaaaattgatcaattacaTATGCGACATTTGTAAAAGGTTCTTCAACAGCAAAAAACTCTTTGATGATCATAATTTAGCGATGAATCATCTAAAACGAACACTGCCGCGATGCTCAGCGGTTGGTCATGGTGCAACTGCAATGTACATGTGCCACATTTGTAAACGAACGTTCAGACAGTTACAAATGATGAAGGACCATTGGGATAAGCACAGCCCAGTCGCAGAATTGTACGTGTGTGATAATTGTACCGTAGTGCCAACCGGTGATCCGTCTCAGTATACATACGAACTATTCCAGAAGCATTGCACTGATCATCACGCTAACGATGCGAAGGTCacgtgtaatatttatttttcgatggcGAAATACGTTTGTTCAATCTGCAAAATCGGTTTCGAGAACGAACGACAGTTGAAGGAACACCAGATCTGTCATCAGGGATTGCAATCACAACAGCCGATTAGAATCTTATCGGCCAATACTCCTACGCAAGGGTCAACGGTCATTTGGGTGACCGACAACCAAATATCCCGCGACGGCGGTAAACAACTGTATCCATTGTATGTTAACGTTGTTGAGGGTAATACCAGTTACGATGAAGCCTCACCAGCGGCACAGATTCGACGTCCCGCCGAAACAGGCGTCATAGTTAACAATACAGCGTCGATTCCGTCTCAACCTTCAGGGGTCACGAACATCTCAAATTTCAAAGCACTCGCGATTCAAGGGAATCGGGCAGTTCTTTCCGAGACCGACAGCTCGATGCTTCGCCAAATGCTGAACTCACAAGAACAGGAGAAGTCGGCACGACTTGAAAGCCCTAATGTACCGGAAACTACGATGCCGAAGATAACAAATGTCGAGACCGTGATTGATCTCGTGGATTCAAGATCCAACAGTCCTGCGGAAAATATAAGCATCACTAACGTACAGAGCGTTGCACAACGTAATGGCGAAGGATTAGCAAATCCGAGCGAAAGCAGAACCAAGGAGAACGACGATGGGTCGAGGCAAAATTACATGACGAAGGTGAATCCAAATTTCGAAACGTTATTGGTTGCGGAAAGTTCCAAAGGAAAGCGTGTAGGAAATACACCAGGACAGCAGCAGGTATCGAATaaagtgaatttattaataaagccCATTACCGAGGAATCGCAGAAGAAGAGCATAGACGATTCTCGGAAGAATGTACCGTCCGATATTGAAATCATCTCCGTATCAAAGAAGAATGGGACTCTCGCCCAGAACGCGACTATTCAGAGCTTGAAACAGAGTGCTAATAAAGCAAATGACGCGAGTCCCGTGCCGAGTCCCCAACCGTTCGAAATCGTATTGGTGAGTGAAGACATGGCAATCGATAGCCCTAATCTCGATCTCAACAATTCGTTTGAGTCGAAAAACTGTCAGCGGAACCGTCCTCAAAGCCTCTTAAAAACGGAGACCAAGATCGAATCTCATGCCAATCAAAACTCGGTACAATCTGGCGTTTCGACCAATAAAGCCACACCTACCGACAATGGCACAGAGAGCTCGTCCAAGTCGTTCTTGAGGGTCCGAAGCGTCGCGGAATTGCAGAAAATTCAGTTGCACCTGTGCGCCGTTTGCGGAATAAGTTTTGACAATTGGCGGGACTTTGAGCACCACTCGAAGACTCATTCTAAGGCAGACAAGAGTACCACCAAGACCAGTGATCTACGTATCGTCGACACGGAGTCTATATCCCGTAAGGAATTCGCGGAAACGCCTTCTAGTTCCGCGCCACCGGTGCAAATGATCTCTCCCATGGTAACGGATCAAAGTTCGACACCAAGCGGATCGGCTTCGAAGAATAAAGAGCAGCCTTATTGGTTCGCTTCCTGCAATAGCGGTGAAACGCCTGTTGCGGAATTAAGCCACGGGGAGAGAGTCGCAGTGTCCCGTCCTTTGGAGCAATCGGTTGGATACACGAAGTCGACGAGCGGTAGTTTAGCAAACAATACATCGCGTGTTATTCAAGCTTATCCGAGCAGCGGAGCGGCTCGAACCGTCGCTATCCAATTGCCTGAGCGCAGCGGAAACAACGTTCTCACGAAACGGCCATCGGGAGCTGCTACGCGAATTCCTCAAAATCTTCCGAAAGACCCACCTCCTCTTCCGACGTATTCCAGAGTCGAGGAGCCCTTCTCGGCGCACAATCAACGAGCGAGATCTTCAACGTCAACGGACTTTACGGCGAGTGTCAAACAAACGAAGAAGTACTCCTGTCCGACTTGCAGGGCATTCAGCAGCGATTCGCTCGAAGAAATGTCGCGTCACGCAGAAACGCACTTTTCGACGAACGCCCAGATGAATCAGCACAGTCTGAAAACATACGGTACACCTTATCAGCCGTTTCAAAATACCAATACGATGCAGCAAGCACGACCGGTTCAGTCAATTAAGACGATCTATGCTTGCAAGTTCTGCCACAATTTCAGATCGGAGAATATAACGTTAATGAAGCACCACGAAAGGTCTCACTTGATGCCGCGACAAGATCCACAGGGCGTGTATATGCAACgacaacagcaacaacaacagcaacaacgtcagcagcagcagcagcaacaacaacagcaacaacgtcagcagcagcaacaacaacaacaacaacaacgacagCAAGTTCATAAATCTAAACACATGCCGGTGGTCCACGTCGCCGACAGACCTAGATCCGTGACGCAGAGCAAGGCAGGGCCGAAAACGTTCGTTTGTCGCATTTGCAATTTGTACAGTTTCCAGTCAAGTGCGGAGTTGTTAGAACATTTGGACAATGCTCACAAGGCGCCGTCTTCCGGCCAGGTCTGTTGCTACGTATGCGATTACTGTCCAACGCCGCTGATATTCGATTCGGAAGACGCGTTGCGCAATCACATGAACGTTAGTCATAATTATTCGTGCGAGGTTTGCCTGAGGAGGTATTCGTCGCGACAGGACCTACAAGTTCACCAAATGAGCCACGGACCCATTTCTAAAAATGCGTAA
- Protein Sequence
- MSGEYPEVPTETEPLVSEALEPNIHSVETAEHSMAESTKSSLSKKKNTNTLFAEKMRNRKKEAEERIKSVSPEQTSSSCKTVTEEVTQVVKKSASQLVSVKDKNRVRRRNSQWSKGFVVKKKKYFSTSRQATDTSKSNGETVKISQKTKKPVMMQNGTTQSNTSKIETEQKETGESSKLDIHMEVDEQEEMPVRMTRRSRLSNKLENKEVLESVIASSEIIQNSSCSRTEPFIGKLRTKEERKMVIDKEFNISSSLVNNISSIPNSVPTTDCVPSNANTLKSNVITLPKKENPGTSKKDASDVVKDVCTEKNQMPQEKKETPNEKNEVFKETSSRTNVSSTPVFDSTKQIEEKPEPLKTLQEVQEKSVDHAESISGSSSSSAENIKKTMTKKFNKTKEDDKEVTSEDSTCRRTEPFVGKREIKPTSLRVSEPQKVEEPNEKESTKENKSIKETESTQEIECIKENESTKITECTKESESTKITECAKEGEPTKADAPLIAVNEHIDDNEIMSLPMDSTNKDEEWSCKRTEPFVGKVQRHGSSMSVVSSRLQGQPEAVVEEPVFEEPGCSRTMPFIRPHLSAELNTIYDKQRDSKINVAVKVPDDNIGGSAKESNSTLTNFKKRPKTPNNNINEEMSAPKKFKSSKKIGNNSDCGPSHSSDANSTSTKTTPSKGTTICGMFSLNCTKHAHHHDQINNLNTSALKKFEIRLSKLEHSQNPEVKQWLLMQKQRKRRRVSSSSYENNQLCNNEPNTKTIRNYQTPSSMNETFAGSVPRVIESSEGKNIQPHITSIQTVPSDISSSNDNNISMTEVTQILSETPKRAPSKRRRKSTSILNSISKEDLKDKHKPSEIKDLKVELIRLETVQGSFDNDYSASEIESLTKKYVDFLMNSNFSCQMLRRSVRNVQRTEDSDDAFTEEDYSDNLVPRPRTSSQARDDLIAIERDALYDDAQTDDCSDIKPLIIHASDVFAYDNRIIDLATEEEEEASEMMTKHTNVDPSVLNNNISHQSLSSDSVMSSSTHHAMNQESRNKAAVQISDVLHSSANIRNKSKKSTNSDSASIDKSITLNEESLSSEPESMTDSSSQAKRRQIHGVNVIKCTKCDKIFVNEKVLQIHLVHVHKEHKVNENVTTKPPKPKKQVTLTRRKFTYNNSLECNVCSAVHANKEQLFEHIITHTPTELQNACDSALEKQNRKENSKDNGTADVNSDSSTQAESNNVEATSTDIQANCNDVQSNANDVKAKANEVQSNCESLNQNLQEATPEVVEFTQINLTPEQNSVQNFVTAPVTNNPDEQLVTRQTDQVKPITVCPCHRNETSELNSLDLQIEMVLLCKTCRVLFRRRDCFEIHYRNSEECQKARSDYLNVRMPKLFCSSCRFVLNSLPEMRKHLEMHARQNSQGTVTFLCNICKVAFFGVGNIFYNHWFSHNKEPLFVASRYSFPKLSVVSVNDETSPTICGLRNRDGFFYVAEHVCRTCRVPFGSESELRRHHLSPCSVPEPPVVELKTVKDKPKPLIKIHNPQPTRTTKLKLINYICDICKRFFNSKKLFDDHNLAMNHLKRTLPRCSAVGHGATAMYMCHICKRTFRQLQMMKDHWDKHSPVAELYVCDNCTVVPTGDPSQYTYELFQKHCTDHHANDAKVTCNIYFSMAKYVCSICKIGFENERQLKEHQICHQGLQSQQPIRILSANTPTQGSTVIWVTDNQISRDGGKQLYPLYVNVVEGNTSYDEASPAAQIRRPAETGVIVNNTASIPSQPSGVTNISNFKALAIQGNRAVLSETDSSMLRQMLNSQEQEKSARLESPNVPETTMPKITNVETVIDLVDSRSNSPAENISITNVQSVAQRNGEGLANPSESRTKENDDGSRQNYMTKVNPNFETLLVAESSKGKRVGNTPGQQQVSNKVNLLIKPITEESQKKSIDDSRKNVPSDIEIISVSKKNGTLAQNATIQSLKQSANKANDASPVPSPQPFEIVLVSEDMAIDSPNLDLNNSFESKNCQRNRPQSLLKTETKIESHANQNSVQSGVSTNKATPTDNGTESSSKSFLRVRSVAELQKIQLHLCAVCGISFDNWRDFEHHSKTHSKADKSTTKTSDLRIVDTESISRKEFAETPSSSAPPVQMISPMVTDQSSTPSGSASKNKEQPYWFASCNSGETPVAELSHGERVAVSRPLEQSVGYTKSTSGSLANNTSRVIQAYPSSGAARTVAIQLPERSGNNVLTKRPSGAATRIPQNLPKDPPPLPTYSRVEEPFSAHNQRARSSTSTDFTASVKQTKKYSCPTCRAFSSDSLEEMSRHAETHFSTNAQMNQHSLKTYGTPYQPFQNTNTMQQARPVQSIKTIYACKFCHNFRSENITLMKHHERSHLMPRQDPQGVYMQRQQQQQQQQRQQQQQQQQQQQRQQQQQQQQQQRQQVHKSKHMPVVHVADRPRSVTQSKAGPKTFVCRICNLYSFQSSAELLEHLDNAHKAPSSGQVCCYVCDYCPTPLIFDSEDALRNHMNVSHNYSCEVCLRRYSSRQDLQVHQMSHGPISKNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -