Tnig020374.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- gtf3a
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010014297.1:2171-7617[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.47 1e+02 5.2 1.6 1 23 765 787 765 787 0.92 2 17 0.051 11 8.2 0.4 1 19 793 811 793 814 0.92 3 17 8.6 1.8e+03 1.2 1.0 3 23 821 841 820 841 0.95 4 17 0.0004 0.084 14.9 1.7 3 23 850 871 849 871 0.98 5 17 0.0033 0.69 12.0 2.1 1 23 878 901 878 901 0.95 6 17 0.0001 0.022 16.7 0.7 1 23 907 930 907 930 0.94 7 17 0.05 11 8.2 0.7 2 23 938 958 938 958 0.97 8 17 2.9e-07 6.2e-05 24.7 3.3 2 23 964 985 963 985 0.97 9 17 1.6e-05 0.0033 19.3 0.2 1 23 991 1013 991 1013 0.99 10 17 0.0011 0.23 13.5 2.8 2 23 1025 1047 1024 1047 0.95 11 17 0.028 5.9 9.0 2.3 1 23 1053 1076 1053 1076 0.95 12 17 0.0067 1.4 11.0 2.6 2 23 1098 1120 1097 1120 0.95 13 17 6.2e-05 0.013 17.4 1.2 2 23 1127 1149 1126 1149 0.97 14 17 0.0013 0.27 13.3 3.0 3 23 1158 1178 1158 1178 0.99 15 17 0.00046 0.097 14.7 1.1 1 23 1184 1207 1184 1207 0.96 16 17 1.5 3.2e+02 3.6 4.3 2 23 1214 1235 1213 1235 0.96 17 17 0.0021 0.45 12.6 2.6 1 23 1241 1263 1241 1263 0.98
Sequence Information
- Coding Sequence
- ATGTCGAAGAGTACATTAGAAAATTCTACTGAAATAACTGCAGTAGGAACCATTGGTATATCAGAAAATTATCAGATATCCAACAGCTCTACCATTGACCAAGTTTCTTTTGAAGATAAAATCCAATCTGATAATTCAGCAGGGTTGGCATTTGCTCCATCGGATGCGCAGGCGTTATCAGGTAGCGATGATGCTTatggacaaaatattattatagagaTTATAGAAGCCAATGAATCGGTGAAGTCTGAAAGTTCTTTATTATTAGGTGATATTCAGAAAGTTCTTACATCTAAACACTCAACAGTACTTCAAAATAAAGATCACAATTACAGTGAAATAACAACTTGTAAGAAGAAAGATCGACTTGTGCAAGAAGATGTTAAACAAAGAACTATGCAAAAAATACCAGTGCAACAAAAAGTGATATCTGGGTCTAAAGAAAAAATTGGTCAAaagattacaaatattaatgacCTCAAGAAAGCCACACCACTTGTAAAACTTCCAGTTTTATTGTCTCCACCAATCactaagaataattttaatagaaCTGAAGGGATAAGAGAAGAATTACATAAGTACTGCCGGACATGTGCGGGTTTAAAAATGCCTTTGGTTGATATTTTTGGAGAAAGGGGGATTCAGATGAGGTTAAATCAACAAATGAGACATTTAgaagaaattgataaatctACCAGTCTGTCCACTCAAATGTGTATGGATTGCATTTGTGATTTGAAAATgagttataaatttttcatgcaGATTAAGAAAgccgaaatgaagttaaaatctATTCACGCCTCGCTTAACGAAACACATTCAAAAATTTCACATATTTCTGAACAAAAGATTGTTAAAGACATTCCAAAAACCATACCAGTAAAAGAAATCAAAAGTCCATCTCCTGAAATTAAACAAGTTGATCAATATCAGTGCAAGCCTGTTTCAATAAACACTACGATTTTACCCCAACAATACCCAAATATTTTACCTTCTAATGATGATATTGATCACGATGGTATAAAAGGAGAGTGTGCTGATTATgattattacgaaaatatacAACACCAGGATGAACTTGAATCAATTGAAGAATTTGATCCAGATGATGTACATTCAAATCCTGATTTGCCAGAAGGTTgcgaaaatgaatatgaatttgGCCCCAAAGATCAAAATACTGAGATCAATAGTTTAAATCAATTAGCTTATACGTTTGATGAATCACTCAATGcatatgtaaaaattgatcGCAAACAAGATAACAAGTGTGAAAGTGCAGAAACAAATATTGTCGCAACTGATCCTGCACAATGCAGTGATCATGCAGAAGCTGAGCAGTTACAAAACCAAGCAGTAAAGCAGcctaatattttgaaaagaaaacttTCCAGCGATCTAAAAAATGAGGGTAATGTCGACAAGACAGTTAATAAAATAGACTTCCAAAAGATCAATTTTGGTCCAAAAGAtagtaaaatacaaaagttgaatGTTCACGAAACATTAAACATAAAGACAGAGGAAGAAGGTATAATGTACGTCACTGTCAAGGGTAATAATCCAAatgaacttttgctagtaaaagttaaaaaaatggataaaccTTCGGATAAGAAGGTAGAAAAGGTGcatggaaagaaaaaaaatgacataatttcaAGCATCAAATCATTTATAGGAAAAGATGAGTCAACTTTAGACAGAGCCAAAGTTGATCCAAAAGACCATTATATTGAGGAACAAATAgaagaatataagaaaaaacgagaaaaaatatTAGGTGAACAGTTAAATTTGGCAAAAGCTGAAGATGGAATTCGATCTGTTAAAGAATCTTTTGTTATCGGTCCACAAGATCAACAAACTATAATCATGGAAGAATTGGatgaaacagaaataaaaccaaaaattgaacaagacatcgaaattggtgaaaatttaGTTGAATCCGACCAAGCATTTTCAACACCTCAATCTTCAGCCCGTATTAGTAAACTTCGACAAAGATGggcagaaattaaaaagaaacacgaTATTATGAATAAGGATTTAGCACAAACAAATTCTATTGATAGATTACGATCGGTTTTAGGAGGGGAGGTggaaaatttacaagaatttcTGGAATACTTGAAAATTCGAAGAATTGTTGTTTCTCGACTAAAAGATGAAGATATTATTAGTCTATACGAAACCAAGAATAATGTGAATCTTAATAAGAACGTAGTTGAGACGGTGGAAATAGAGGCTGTCGAGGAGGATCCATTTGtggaaaaagaaacatttcattGCGATTGGTGTTTTAAGCAGTTTCCAAATAAGGAACTTTCAGAAGAACATGCAAAGAGTCATGATTTAAAACTATTACACTATTGTGATGATTGTGATGAAGAATTTCCAACGAATAAAGCAAGACGAAATCATAATGTTACCTgtatcaaaaaattgttatgtaaatattgCGATATTCTTTTAGATTCTAAGGGTAAAAAAAGACAGCATGAACAGAAACATTGTGATGACCTTTATGGACAACTGTGTGATATGTGTGGAGAAAGATTCAAACATCAAGGTACCCTGGATCAACATGTAAAAACTCGCCATATGGAACTAGAAAAGACTTTTCAGTGTCCAAAATGTCCTAAGAAATTTgcgtttaaaacaaaattaagttttcaCTTAAAATCAGTGCATACATCAATGCGAGCATATTTGTGTGAAGATTGCGGTGCTGACTTTAAAAATCCTGCAAGTTTAAGGCATCATAGAATTCGCAAACATCAGCCAATCAGTAATAAGCGTGAGTGCCCTGTTTGTAAAAAATCTGTACCAGTATACAGTCTATCAAAACACATGCATACACATAAAGCTTACACGATTAAATGTCCCCACTGTGACaagatgtttaaaaattcttctaCGCTTAAGCAACATACAAGGATTCACGAAGATCAAAGGCAATATAGATGTGATATGTGTGGAGTTGGATTCAATCGGCGAGATGGATTAAGACTACATTTGAAGGTTCATGAAAAAGGTGATAGTAGAGGTTTAAAAGAATGTTCATGTCAAGTGTGCGGAGAAAAATTTCCCAATCATTCAATGCTTGTAATTCACAGAAATCGTAATCACAAAGATGGTAGACATTATACTTGCCATATATGCAATAGATCAATGATTTCTACACGATCCTTAGAGTGGCATTTGTCTCATATTCATAATGAAAGTATGCCTGGCATTCCAAAAAGTGACCCAGATAGTAGCGCTGATATTAAAAGAGTTTCGTGTTACCATTGTGACAAGACTTTCAAGACAGAAATGATTCTCAGAACTCATATTAAGAATACACATGTGGAAAAAGATCCGATGAAGTGCTTAGACTGTGACGAGACATTTACATCTGAAGTTAGGTTGAGGCATCATATGATGACCGCACATAATCGTCTTGAAGGTACCTTAGGGTGTCCTCATTGCACAAAGCGATTTGTGAATTCTTTAAGGTTAAAGACTCACATGATATCTCACTCTGAAGAAAGACCATATACATGCGAAATATGTGGTTTTAATTTAAAGACAAAGATTCAGTTGATCAAACATCGTCAAAATAGACATAGTGATGAGAGGCCTCTTCAATGCCGGTATTGTACGTGGAGGTGTAAACAAGTAAGTGCTCTAGTCTGTCATGAAAGAACGCATACAAATGAAAGGCCTTACTCGTGTAGTGAATGTaaccaaaaatttaaatatcttggTGACAAGAATAAACATGAAAGGCGTCATGAAAGCTTAGGAGGTGCTGGATTCAAGAGAATTGTATCAGGCAGAAACACAAgagtaaagaaaaaagaacctGAGTCGACTGGATCAGAACCAGACCAAGAAGAATATGAAATTACAGGACATTTTGATGATCATTATCAAGAAGTGGATGAAACATTTGTAGAAAAGTATGAGGAAAAATTAACTGAAGATCAAGTTGTGAAATTTGAAACATCAGTAGCAGAAGTAGAATCCTATAATGCGGCTTACGAAGAGaCTTATGAAGAAACCTCGCAAGATATACCAGATGGCACACAAGTAATAATGACAATGGAAGACCCAGCAGTTTACACGGAGGAAGTTGGAGCAGACGAGATTGAATCCACTGAAATAATAACGGATGATATGATGACAAGTCAAATCCTGCAACCTGGAACCGTGGTTCATCTACAGCAGCAGGATGAGACAGGACAGATTCAAGTTATTCCTGTAATGCTGTCCTTACCTGATTTGACAGATGGAAGCGCAGAGGTCAATTTGGCAACTGCATCCATAATGTACAATAATTGA
- Protein Sequence
- MSKSTLENSTEITAVGTIGISENYQISNSSTIDQVSFEDKIQSDNSAGLAFAPSDAQALSGSDDAYGQNIIIEIIEANESVKSESSLLLGDIQKVLTSKHSTVLQNKDHNYSEITTCKKKDRLVQEDVKQRTMQKIPVQQKVISGSKEKIGQKITNINDLKKATPLVKLPVLLSPPITKNNFNRTEGIREELHKYCRTCAGLKMPLVDIFGERGIQMRLNQQMRHLEEIDKSTSLSTQMCMDCICDLKMSYKFFMQIKKAEMKLKSIHASLNETHSKISHISEQKIVKDIPKTIPVKEIKSPSPEIKQVDQYQCKPVSINTTILPQQYPNILPSNDDIDHDGIKGECADYDYYENIQHQDELESIEEFDPDDVHSNPDLPEGCENEYEFGPKDQNTEINSLNQLAYTFDESLNAYVKIDRKQDNKCESAETNIVATDPAQCSDHAEAEQLQNQAVKQPNILKRKLSSDLKNEGNVDKTVNKIDFQKINFGPKDSKIQKLNVHETLNIKTEEEGIMYVTVKGNNPNELLLVKVKKMDKPSDKKVEKVHGKKKNDIISSIKSFIGKDESTLDRAKVDPKDHYIEEQIEEYKKKREKILGEQLNLAKAEDGIRSVKESFVIGPQDQQTIIMEELDETEIKPKIEQDIEIGENLVESDQAFSTPQSSARISKLRQRWAEIKKKHDIMNKDLAQTNSIDRLRSVLGGEVENLQEFLEYLKIRRIVVSRLKDEDIISLYETKNNVNLNKNVVETVEIEAVEEDPFVEKETFHCDWCFKQFPNKELSEEHAKSHDLKLLHYCDDCDEEFPTNKARRNHNVTCIKKLLCKYCDILLDSKGKKRQHEQKHCDDLYGQLCDMCGERFKHQGTLDQHVKTRHMELEKTFQCPKCPKKFAFKTKLSFHLKSVHTSMRAYLCEDCGADFKNPASLRHHRIRKHQPISNKRECPVCKKSVPVYSLSKHMHTHKAYTIKCPHCDKMFKNSSTLKQHTRIHEDQRQYRCDMCGVGFNRRDGLRLHLKVHEKGDSRGLKECSCQVCGEKFPNHSMLVIHRNRNHKDGRHYTCHICNRSMISTRSLEWHLSHIHNESMPGIPKSDPDSSADIKRVSCYHCDKTFKTEMILRTHIKNTHVEKDPMKCLDCDETFTSEVRLRHHMMTAHNRLEGTLGCPHCTKRFVNSLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHRQNRHSDERPLQCRYCTWRCKQVSALVCHERTHTNERPYSCSECNQKFKYLGDKNKHERRHESLGGAGFKRIVSGRNTRVKKKEPESTGSEPDQEEYEITGHFDDHYQEVDETFVEKYEEKLTEDQVVKFETSVAEVESYNAAYEETYEETSQDIPDGTQVIMTMEDPAVYTEEVGADEIESTEIITDDMMTSQILQPGTVVHLQQQDETGQIQVIPVMLSLPDLTDGSAEVNLATASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -