Tnig022464.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- -
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010016641.1:1312-4062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.9 1.9e+02 4.3 0.5 2 19 117 133 116 136 0.86 2 14 9.1e-05 0.019 16.9 1.8 1 20 142 161 142 164 0.96 3 14 0.98 2.1e+02 4.2 0.8 1 23 170 193 170 193 0.89 4 14 1.4e-05 0.0029 19.4 1.5 1 23 199 221 199 221 0.98 5 14 3.5e-06 0.00073 21.3 0.5 1 23 361 383 361 383 0.98 6 14 0.023 4.8 9.3 0.3 2 22 393 413 392 413 0.94 7 14 0.00011 0.022 16.7 2.9 1 20 434 453 434 456 0.93 8 14 0.0021 0.45 12.6 0.7 1 23 461 484 461 484 0.95 9 14 2.9e-06 0.00061 21.6 1.7 1 23 490 512 490 512 0.98 10 14 0.00072 0.15 14.0 5.8 1 23 519 541 519 541 0.98 11 14 0.00031 0.066 15.2 0.3 3 23 549 569 547 569 0.97 12 14 0.00079 0.17 13.9 0.3 1 23 575 598 575 598 0.95 13 14 9.9 2.1e+03 1.0 0.2 1 23 612 634 612 634 0.78 14 14 0.12 26 7.0 0.0 2 23 894 915 893 915 0.96
Sequence Information
- Coding Sequence
- ATGGAAACAGAAGAGAACGAGCAGTTTGTTGATTTTCCAATCAGTGGGGTTCCTGATGACTTACGAGATCAAGTCGTTTCTCGCGAAGAGATATGCGAACCTGTTAACGAATGTGTCATCCTTCAAGAAGATCTTGCAGAGGTAACAGTTGGTCATGAGATGGTTGAAACCCAGGTGGCTGTCCTCACTGAGCATTCAGACGAGGAAGAAGAACATCCTGTAATTTATCCGATATACATTAAAGAAGAGGATCATCAACCGTATACATCAGGCGATGACGAATCTATGGCTGTCGAGGCATTACGCCAACTCGGTGGCATGTACCCTGCTTATGAAGATAAAAAAGTCACTTGTCAGAACTGCTCCAATACATTCACACAAGCAGAAATGACGaaacataaaacaaattgtCCATCTCAAAAGTTTACATGTAACACTTGTGGGGAAAATTTTGAGAGAAAGGTCGACTTAAATAATCATATGGTATGTCACCAAGTAGATCGACCTCATGCCTGTCGAACTTGCGGAAATTTATTTCGGTCCAAAGCTATTTTGCATGCTCATATGGTCGAAGTGCATCAAGTAGAAAGACCTCACAAGTGCACAATTTGTGGGTCCGATTTTCAACGGCCATCTAGTCTCTCTAATCACATGaaaatacacacatatgtaGCAGGCCGAGCTTTAATGCAAGCAAATAATATTGCATCAAATGTTGAAGCATTTACGCATGATTCATCAGTGGCCTCAACTTCCGTTCAAACTGTTCATAACTTTGAGCTTCCTCAAGTCCAATGGGCTGTGCAAACTTACAACTTTCAAACTGATAATACAAGCGGGCTTAACAATCAGAATGAGAAATTGGATACGTTACAGGAATTTACAGTAATGCCGAATGGTGAAGTAGCACAATTTGAATACGCTAATGAAGCTGGTATTGATGCTCAAATTGGTCAGCAATATAGTCTGACACTGAACTCATTTGGTAACTCTGAAACGTTAGTAAAAGTTGAAGCAACCCCATTCAACAGTGATGATCAAAGGAGGTATGTAGACGTAGAAATGGAGGATAGTAGAACTCATACATGCAATCAGTGTGGAGTGAGCTTTGCTCGGGCTTCCGCGCTTACAATACATGAAAAGACGCATTTGCCAAAAAATTGTAGCACACCTGTTCAATGTAAGAGCTGTGACAAGCAATTTCAAGATGGAAATCAGTTATCGAATCATCAAATAAcctgtgtaaaaaaaaatatgcagaaTAGTGAGCAAGGAGAGACCAATAACAAATGGGGAAAGCACTCGTGTTCAGAATGTGGTAAAAGTTTCACCACTAAACAGAAGATGTTTCGACATCAATGGATTCACCGAAAGAAAACACATTCATGCGAAGTCTGCGGCACTCAATTTGAAAAACAGAATCAACTTGATGAACATCGACTTTCCGCTCATCCTGGTGATTCTCCACATACTTGTCCTGAATGTGGAAAATGTTTCGTATCTCGACAAGGACTTTGGGAGCATGGCAGAACACATGCTGGTAGTCCAGCACATTTTCACTGCGATGAATGCACAAAAACTTTTTCTTCGAGGCAAGGCTACTTGATTCATCACCGCACTCATACAGGTGAGCGACCGTACGGATGCAGATATTGCTGGAAAGCCTTCCGTGATGGAGGAACTTTACGAAAACATGAAAGAATTCATACTGGAGAACGCCCACACATATGTCCCTTATGTTCAAGGGCTTTCAATCAAAAAGTGGTATTAAGAGAACATGTTCGTTGGGTGCATGCAGCTGGCAAGAACGAAACAGAGTCTACTGGTCCCCCTTTTCCATGTCCTTTGTGCAGTGCACTAAATCAGGATCGTGATGAATTATGCGCGCACATAGTTCAACATTCAGATCAAATTATTGCAGCAGCAAAGGCAAAGACAAATGCTTCAGTTCCAAAGAAAGCACCTAAGAAAAAGACCAAGTCCCAAGGAAAGTCAAAGACAAAACAAACTAAAGCAGAAAATAAGGAAAGGGTATTTGATTCGGAACAACATGAAGCTGTGATTTCAATCTCAGCAGATAGGACTGTAAGCGATCAACCTATGACTATAACTCACCAGAATAACACAGTATTAATAGTAACAGGCAAAGAAAATGATACTATGTGCATCATTTCTGGTGATAAGCAAAGCAATGTTAAAGAAGATTCAGATAATAACCATAATGAATCAATTGATTTAATTGCGATTGGAAAAAACCAGATATCTAATGAACTTGTTTCTTCCCGAGACGAAGAAACCATTTCGGCTGTAATTAGTCATAATTTACTATCATCTAACACAATGCATTTGATTCCATTTACGAAGTCAGGTGAAACAGTCCATCTTATTTCTAATAAGCAAAATAATACTTTACATCTCATttcgaaacaaaatgaaaacttaCCTGTGCTGACTCTCCCAAATCCAGAAAGCGAAGAAACCTTCTCTGAACAAATTTCACACATAAGTAATAGTGAATCATCTATGAATATAAGCCACAACATGGAAGATGAAAATTCTACAGAAAAGGCTCTTTCTCCAGAAACGATATTCGTTGATGGAGATGCTCTTAAATCTGCAATAATCCAAGTCGAATATGAAGGTGAAGAGGTCGAAGATAGTGATGAAAGTGAAGAGATGGTATGCGGTATATGCGGTGATGATTTTGATGATAAAAACGTTCTAATGGAACATGTAAAGATACATATTTAG
- Protein Sequence
- METEENEQFVDFPISGVPDDLRDQVVSREEICEPVNECVILQEDLAEVTVGHEMVETQVAVLTEHSDEEEEHPVIYPIYIKEEDHQPYTSGDDESMAVEALRQLGGMYPAYEDKKVTCQNCSNTFTQAEMTKHKTNCPSQKFTCNTCGENFERKVDLNNHMVCHQVDRPHACRTCGNLFRSKAILHAHMVEVHQVERPHKCTICGSDFQRPSSLSNHMKIHTYVAGRALMQANNIASNVEAFTHDSSVASTSVQTVHNFELPQVQWAVQTYNFQTDNTSGLNNQNEKLDTLQEFTVMPNGEVAQFEYANEAGIDAQIGQQYSLTLNSFGNSETLVKVEATPFNSDDQRRYVDVEMEDSRTHTCNQCGVSFARASALTIHEKTHLPKNCSTPVQCKSCDKQFQDGNQLSNHQITCVKKNMQNSEQGETNNKWGKHSCSECGKSFTTKQKMFRHQWIHRKKTHSCEVCGTQFEKQNQLDEHRLSAHPGDSPHTCPECGKCFVSRQGLWEHGRTHAGSPAHFHCDECTKTFSSRQGYLIHHRTHTGERPYGCRYCWKAFRDGGTLRKHERIHTGERPHICPLCSRAFNQKVVLREHVRWVHAAGKNETESTGPPFPCPLCSALNQDRDELCAHIVQHSDQIIAAAKAKTNASVPKKAPKKKTKSQGKSKTKQTKAENKERVFDSEQHEAVISISADRTVSDQPMTITHQNNTVLIVTGKENDTMCIISGDKQSNVKEDSDNNHNESIDLIAIGKNQISNELVSSRDEETISAVISHNLLSSNTMHLIPFTKSGETVHLISNKQNNTLHLISKQNENLPVLTLPNPESEETFSEQISHISNSESSMNISHNMEDENSTEKALSPETIFVDGDALKSAIIQVEYEGEEVEDSDESEEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -