Tnig008357.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- -
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010003880.1:4844-15123[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 7.1e-06 0.0015 20.4 1.0 1 23 134 156 134 156 0.98 2 29 0.003 0.64 12.1 1.9 1 23 179 202 179 202 0.96 3 29 0.00049 0.1 14.6 0.5 2 23 209 231 208 231 0.96 4 29 0.00073 0.15 14.0 1.6 1 22 251 272 251 272 0.95 5 29 0.37 78 5.5 0.2 3 23 367 387 365 387 0.94 6 29 0.0072 1.5 10.9 0.5 1 23 395 418 395 418 0.92 7 29 0.00024 0.05 15.6 0.1 1 23 492 515 492 515 0.96 8 29 0.007 1.5 10.9 0.3 1 23 521 544 521 544 0.96 9 29 0.14 29 6.9 1.5 1 23 557 579 557 579 0.97 10 29 0.0019 0.41 12.7 2.6 3 23 624 645 622 645 0.95 11 29 0.37 77 5.5 0.8 2 23 708 731 707 731 0.93 12 29 6.3 1.3e+03 1.6 0.0 2 23 740 762 740 762 0.83 13 29 0.028 5.9 9.1 0.1 2 23 769 791 768 791 0.95 14 29 1.5e-05 0.0031 19.4 1.2 1 23 799 821 799 821 0.98 15 29 0.00024 0.05 15.6 3.3 1 23 899 922 899 922 0.97 16 29 0.0037 0.78 11.8 0.6 2 23 929 951 928 951 0.95 17 29 0.0087 1.8 10.7 8.7 1 21 978 998 978 999 0.95 18 29 0.003 0.64 12.1 1.8 2 23 1013 1034 1012 1035 0.93 19 29 0.0073 1.5 10.9 0.7 2 23 1068 1091 1067 1091 0.92 20 29 1.1 2.3e+02 4.0 0.2 2 23 1099 1121 1099 1121 0.95 21 29 4.1 8.6e+02 2.2 0.0 2 23 1128 1150 1127 1150 0.87 22 29 0.64 1.4e+02 4.8 4.7 2 23 1159 1181 1159 1181 0.96 23 29 0.085 18 7.5 0.9 2 23 1187 1209 1187 1209 0.93 24 29 0.0092 1.9 10.6 0.2 1 23 1271 1294 1271 1294 0.96 25 29 0.001 0.21 13.6 2.3 1 21 1322 1342 1322 1343 0.95 26 29 0.56 1.2e+02 5.0 1.3 2 23 1438 1460 1437 1460 0.94 27 29 1.2 2.5e+02 3.9 0.2 2 23 1467 1489 1466 1489 0.94 28 29 0.34 72 5.6 1.8 1 23 1500 1522 1500 1522 0.97 29 29 6.2 1.3e+03 1.7 0.3 3 19 1531 1547 1531 1550 0.94
Sequence Information
- Coding Sequence
- aaattgaagGTGGAGAATTGCGACGAGGATGACCCTTACTCGCAGTTGCGTAACGAGCTCTTGAAGCAGAGGAGGATGCCAGTACTGATTCCGGAAGCGCCAGTAGTCAATCCAAATGCCGCATTAGGCACTCCTCCGAGGCTCAATTCCGATGGGGAAGCCGAGCCGGAGATCGATGAATGCATCGACCAAAGtgatgaagCATCAGATGTGGCTGGTGTGGACGACACCGAAGACAGAAAGTCCGACGAATACGAGATGGACATGGAGATGAATCCGAGCGACTTCTTGGAGATGCCGCCGATGGTCACGGAGGACAGCGAAGACAACGGTGCCAACGCCTCGATGGTAATGCAGGACACGGGTGTCTTCCAGCACAAGAACGAGCAGCACGAGGTCTACGTCTGTTCCCTCTGCAACAAGGCATTCAGCTCGAAAGGCCACCTGTCCCTGCACGCGCGTATACACGTCGGCGCCGGCGACGTCATAGGCGAAAAGGTCATCACCGACGATCACACGTCGTACAAAAGGCCGTATCAGTGCGATCTGTGCAACAAGTCCTACTCGACGGCCAAGCACCGCTGGGGCCACGTCTCGACGACTCATCGCGGCCATCCTGCTGTAACGTGCGGCTACTGCTCGAGGATTTACTCGACGCGCACGAACCTCGAGGAGCACGTCAAGTCCCGGCACTCGGGACTACCGCCACCGCCGGATCCGCCCGGTCCGTACGTCCATCCGGAGACGCGGCACCAGTGCAAGACCTGCCCGAAAATGTACACCAACGTGACGGACCTGAACAAGCACAGCAGAACGTGCCTCGGCGATCAGCGTAGGGACATGGCCAATTGCATGCCGGTGCAAAAGATGAAAGTCGAGGCGGCCTCCGACATGTCGAGCGTCGACTCGGATCACGAGAGCAGGGACTACAGGAACGCCGAGGCGAAGCTCGCGATGAATCCCCAGCTGACGATACTGAAGCAGGCCCTGACCAAGGGCGACGCCATGAAGCGCGAGTACGACGAGAAGAACAAGACGCTGAAGAAGGCGGCCAATTCGATAAAAGAGGAATACGACGCGCAAACGAAGCGTTGGTGCTGCGAGGCATGCCCACTGAACTTCAACTCCGTCGACGGCCTCAGGGAGCACGAAATGAGTCACGAAAACGATGTCAACAAGCCGTACATCTGCATACTTTGCGGAAAGGACTTTGCATTGAGGTCGCCCCTTACCAGACACATCCTGACCTGCCACGGCGTCGACCCGTCGCCCATGATCAGCGACGACGTGTGTCTCAAGAAGTCCTTAATGGGTCGAATCGCGCCGGTGATTGATCCGAACATTGGCAAAGACGGCATGTCGAGTTCCCCGTTGTCTCCTGATCACGAGGCGAGTTACGTTCATAATCATGAAAACGAGGAGGAAGAGGTGGAAAGCGGCCACGAGAACAATGCGGTCGAGCTGGAGACCGTCTTCATTTGCGAAATTTGCACGAGGGACTTTAACGATCGCGCCTCGCTTTGGCTGCACATACGCGCCACGCACAAGGAACACGCAGCATTCGCCTGCGGGGTGTGCTTGAAGATTTGCGCCGACAACGGACAGTTGCAGAATCACGTAAACATGTACCACGGAGGCTCGAAGCTCTTGATGGCAGAACAACGAAGGTACAGCTGTACGATCTGCGGCAGACAGCACGACTCTCGAAAGAAACTGATAACGCACGTGTCGATTCACAACATCGATTCAACGTACGATCCAGCGGGCTTCGTCCAATTGAACAGCAATTTCTACAGCGAAAACTTGAACAGCAACGAGGCGAACGATTTAATCATGGACTGCGATCCCGAAGAAGGAGAGAAGATCGACTGCAGCATGTGCTGCAAATCATTCCCGAACGAAGATCATCTCATCAGGCATCAGAGGAACGCACATAAGTCGGACCCGATGACACCGGTAGGCGAATACGGCGGTAATGGTAACGGCCAGGGTCAAAATGGGAACGGTAACCGCGCTCAGTACCATTTGTTCTTCGTTTGCGAACTGTGCGGCAGTTCGCATCCGAGCAAGTGGGAAAGGTGGTTGCACGTAAGCAGCACGCACGGCAACGAGCCTTCCATTAGATGTGAGAGAGAAGATTGCGCCAAGATCTTCGCGACCAAGTCCCTGCGCAATGATCACGCACAACACCACTTGGTGCAAGGAAACTCCCCGAACACCTGCGAGGTTTGCGGCAAGCTCTGGGGTAGCCGAGTCGACTATTGGAAGCACGTGATGGGCGTCCACTCGGACACGGTGCCCCTGATATGCGGAGTTTGCCTGAAGGTCTTCCCCAACGTGACGTTGCTGAGTGATCACGTCAAGACCTCGCATTGGCCGCTGACCAACGGCGACTTTAGCTGCGACATATGCGGCAGACCTTACTCGAACAAGTCGAAAATGTCGCGACATCGAAAAATCCACGGCCTCGACGTGGGCGTCGGCGGCGGTGGAGTCGGCGGCGGTGGCCGCGGTGCCGAGAATTACGCGAATCACACCCTGAACGAGTCGTCGATCTTTGAGTCCTCCTTGGGTCACGTCAGATTGGACAACGGCGGCGTCGTGAAGACGGAATTGAGCTGCGACGTGTGCGGCGACATGTCATTCCAGTGCTACGAAGACCTGTGCAATCACAGGCGAGGGGTGCACCGCCTGTTCCCCTGCGATCTGTGCAACAAATGCTACGGTAGGACGTCGCATTTGTGGAAACACGTCAACCGGGTGCACAAGGGCCACAAGGACGTCACCTGCCGATTCTGCTCGAAGACGAGCGCGTCGAAGGACCATTTGGCCGCGCATATCGCCAAGATTCACAGGTACGAACCAGAAGTTAAAAGAGACATGAGGGAATCGTTCAGCTTGAAATCAGGGAACACGGAAGAGGAAGCCGTGCATCACTGCGAAAAGTGTAACAAATGCTTCCACAAACGATACTTGCTACGTCGTCACATGAAAGGTTGCCAGAACTATCGTAAGGATCCCGGCGCCCTTTTGACGCGGTGTCGAGCATGCGAGAGGATCTTCAAAGATCGAGCCAGTCTGCAGAAGCACATCGAGAACCATCACAGTACGTACACCTGCCATCTCTGCAACGATACGATTACGTCGAAGCTGGGCATCATGACGCACAATCGCGTGCACCACATGCAGCATCCGGATCTCACTTGCGAGCTGCCAAACTGCAGAAAGCTCTTCCGGACGAAGGAGGACCTCGAATCGCATCGCAAGGATCACAATTACCACGGCGTGCCTAACGTCTGCGACTTTTGCGGCGACACCGTCGAAAACAAGCTGAAGCTGAAAATGCACATTCTTTCGTTGCACCGAAACGAGATCGGTGTCTCCTGCGGAGTGTGCTTGATTCCGATGAAGGATCCCAAAGATTTGAAGAAGCACGTCGAGGACGTGCACGGGAGCATCCTGCGCAAGCCAAACACCTGCCAAGTATGCGGCAAGCACTACGCTTCCAAGTGGAAGGCCTTCGATCATACGAAGAAGTGCCACGGTAAGGTCTTCCGTACATGCAAGCAGTGCCTAGCCGTATTCACCAGCGACGACGACCTGAAGTCGCATTACGAGCACGTGCACAACGTGCCCAAGGATCAACTGGCCGCTTTTGAATATCGATTGGAGATCGGCCCGACTAAGCCCGACGAGTACGATCCGTGCGAGGTTGTCCTTAAAGAAGAGCCCGACGAATTGGACTTTGACGACGAACCTTGCGACGAAGACTCGAATGGGTCTAAACGGCGGCGATCAATGACCGACACGTACGACTGCGACATTTGCCCCGAGATGTTCCTCAATCAAGACACGTTGTCCTCGCATTACAAAAACGTGCACAATACAGATCCGGTAAGGATATTCAAGAAAATGAAGCTCGACAATGATAAAGCCAAGCGTCAGATGAGGGATCGGGAGAACTTTGAGTGCAACAACTGCCAGAAGCAGTTCTGCACGAAAACGCTGTTCTGGAATCACATTAACGTGTGCACCAGACGCAATACCTCGATGTCGATATTGGAGACACATCTCAAGAACAACAATCAAATTAAGCAGGAACAGCAGGAACCGGAGCCTGATCCGATGCTGACAGAGACGAATCTGAACATTCCAGACTTTAATCTCTTCGAAGATATAAACATGCAGCTGTCCGGGCAAAAGCCGTTGCCGAGTATCATGCCGCATATGGCGTCCAGGACTTCATCGGGATCAAAGTGTTCGAGAAAGGATTCGAGGAAAGTGTACGACGAGTCGACCAACACCGAATGCGCATGCGAAGTCTGCGGTAAGCAGTGGCCCGCTAAGAAACATCTCTGGCAGCACTTGATTCGGTTTCATCGAGCAGAGGCTGCAGTCACGTGCGGAGTGTGCCTTAAACTATGCACCACTTACATTGATCTCGCCGATCATCTGAAAGCCGCGCATCAAGCGATCCTATCGACGGAAGGGAACAACTTCACATGCAAGGTTTGCGGCAGATATCACAATGCGCGTAGTAAACTTTTGCTGCACATGAGCATTCACATAGACTGCCATCTGAACACTTGGTGCTACAAGTGCCAGCGTGACTTGGAGACGCAAGAAAAGCTGAAGGAGCACTCGACCGTGTGCTTGGGTAAGCAATCGAGGAACGCGATAGGTCATTCGAACGAAGGCGTCGAGCACGAGGAAAGCATGAAGAACGACGCAGATGAAAAGGAAGGAAGCTTCATTGGAGACGAAGCTTCGCTAATCGGAGACGCGGAAGAGGTTGGTTTCGATTCTGATGACGATGGTTCTGAGAACGGCGACGATTCCAACTCCAATTCCAATTCCAATTCAAATTCCAATTccaattctaattctaattcgAATTCTAATACCAATTCTAATTCCAACTCGGAAAAATCCAACGATTCCGATAGTGGAAGCGACAGTTCTagcgacgatgacgacgacgagaATGAAGGAGAGGCCAAGTCCAGATCTAACAGCAGGTCCTCCAACAGCTGCGACAGTGAAAGCGAAGAATCGGATAACATGGAAATGACAGGAGAAAATCAAGTTCCGATGGATGAGTCTGAGAGTATCGCAAAGGATGCGAATGAATCTGTAAAGAAAGAATCGTCAAATATCGAAGAACGTTGCGAGTCTCCAGTCAAGTCGGAAGCAGAGAGCATAGATTACTCAGACGACGAAGGACCACCAGTTTTGAGTCCAATTATGCCACTGTTATCCAAAGCGAACGAAGTCGATTTGTCTGAAGACGAAGAGGATGAAGCTGACAATGAAGAACACGAAGTTGAATCGGTTGAAGACAATGAAATGAATCAGTCAGAAAACGAAGCTGAAGAAGAGGAAGGAGAGGAAGAAGGGGAAGGAGAGGAGGAAGCAGAGCAAGGAGAGGAAGAGGaggaaggagaagaagaagaggaagatcAAGATGAAGGAGAAGGAGATGAAGGAGAAGGAGAAGAAGGTGAAGAAGAGGAAGAGGATGGAGAAGAGGAGGAAGGAGAAGAATTAGAGGAGAATGCCGATCATGAAGGAGTGCTGGAAGTCGATGAGAATGAAGTTCACGATATGAATGGAACGGTATTGATGCTTGCTAACGATGCGGACGGTAATCAGATACTAATTCAGAGGAACGTGTCAGAGTTGGCTAATGAAGTTTCGAATCACGAGTTAACTCAATATGTATATCAAGAAGGTAGCGCATATGCGCTGGAAGATTACGAGGCCATGGTAGAGGATCAGCGGCTTTCAGATACAGGAATGAATATGGAAGGCGGCGAACATATGGAGGGAATGGTCCATGATGAGGTCGAGCAGGACGAAGAAGTCGGTTCGGACGATGACGACGCAGAATTCAGCTCTAGTGCCAAAAGCTAA
- Protein Sequence
- KLKVENCDEDDPYSQLRNELLKQRRMPVLIPEAPVVNPNAALGTPPRLNSDGEAEPEIDECIDQSDEASDVAGVDDTEDRKSDEYEMDMEMNPSDFLEMPPMVTEDSEDNGANASMVMQDTGVFQHKNEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHVKSRHSGLPPPPDPPGPYVHPETRHQCKTCPKMYTNVTDLNKHSRTCLGDQRRDMANCMPVQKMKVEAASDMSSVDSDHESRDYRNAEAKLAMNPQLTILKQALTKGDAMKREYDEKNKTLKKAANSIKEEYDAQTKRWCCEACPLNFNSVDGLREHEMSHENDVNKPYICILCGKDFALRSPLTRHILTCHGVDPSPMISDDVCLKKSLMGRIAPVIDPNIGKDGMSSSPLSPDHEASYVHNHENEEEEVESGHENNAVELETVFICEICTRDFNDRASLWLHIRATHKEHAAFACGVCLKICADNGQLQNHVNMYHGGSKLLMAEQRRYSCTICGRQHDSRKKLITHVSIHNIDSTYDPAGFVQLNSNFYSENLNSNEANDLIMDCDPEEGEKIDCSMCCKSFPNEDHLIRHQRNAHKSDPMTPVGEYGGNGNGQGQNGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSTHGNEPSIRCEREDCAKIFATKSLRNDHAQHHLVQGNSPNTCEVCGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVTLLSDHVKTSHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDVGVGGGGVGGGGRGAENYANHTLNESSIFESSLGHVRLDNGGVVKTELSCDVCGDMSFQCYEDLCNHRRGVHRLFPCDLCNKCYGRTSHLWKHVNRVHKGHKDVTCRFCSKTSASKDHLAAHIAKIHRYEPEVKRDMRESFSLKSGNTEEEAVHHCEKCNKCFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNDTITSKLGIMTHNRVHHMQHPDLTCELPNCRKLFRTKEDLESHRKDHNYHGVPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHGSILRKPNTCQVCGKHYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDDDLKSHYEHVHNVPKDQLAAFEYRLEIGPTKPDEYDPCEVVLKEEPDELDFDDEPCDEDSNGSKRRRSMTDTYDCDICPEMFLNQDTLSSHYKNVHNTDPVRIFKKMKLDNDKAKRQMRDRENFECNNCQKQFCTKTLFWNHINVCTRRNTSMSILETHLKNNNQIKQEQQEPEPDPMLTETNLNIPDFNLFEDINMQLSGQKPLPSIMPHMASRTSSGSKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTTYIDLADHLKAAHQAILSTEGNNFTCKVCGRYHNARSKLLLHMSIHIDCHLNTWCYKCQRDLETQEKLKEHSTVCLGKQSRNAIGHSNEGVEHEESMKNDADEKEGSFIGDEASLIGDAEEVGFDSDDDGSENGDDSNSNSNSNSNSNSNSNSNSNSNTNSNSNSEKSNDSDSGSDSSSDDDDDENEGEAKSRSNSRSSNSCDSESEESDNMEMTGENQVPMDESESIAKDANESVKKESSNIEERCESPVKSEAESIDYSDDEGPPVLSPIMPLLSKANEVDLSEDEEDEADNEEHEVESVEDNEMNQSENEAEEEEGEEEGEGEEEAEQGEEEEEGEEEEEDQDEGEGDEGEGEEGEEEEEDGEEEEGEELEENADHEGVLEVDENEVHDMNGTVLMLANDADGNQILIQRNVSELANEVSNHELTQYVYQEGSAYALEDYEAMVEDQRLSDTGMNMEGGEHMEGMVHDEVEQDEEVGSDDDDAEFSSSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -