Tnig001337.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- -
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010000275.1:1805-10814[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.56 1.2e+02 4.9 2.7 3 23 278 299 277 299 0.92 2 20 0.071 15 7.8 2.0 1 23 369 391 369 391 0.98 3 20 0.037 7.7 8.7 1.3 1 23 440 462 440 462 0.98 4 20 0.024 5.1 9.2 1.1 1 20 521 540 521 542 0.93 5 20 0.027 5.6 9.1 3.1 1 23 582 604 582 604 0.98 6 20 0.00099 0.21 13.6 0.8 1 23 664 686 664 686 0.96 7 20 0.0005 0.11 14.5 0.1 1 23 692 714 692 714 0.97 8 20 7.7e-07 0.00016 23.4 0.6 3 23 757 778 756 778 0.96 9 20 4.5e-06 0.00095 21.0 1.2 1 23 784 807 784 807 0.97 10 20 0.00026 0.055 15.4 1.1 2 23 816 838 815 838 0.92 11 20 3.9e-05 0.0083 18.0 0.6 1 23 846 868 846 868 0.94 12 20 0.028 6 9.0 0.1 2 20 916 934 915 934 0.95 13 20 0.056 12 8.1 0.0 2 23 970 991 969 991 0.95 14 20 0.022 4.6 9.4 7.6 1 23 1004 1026 1004 1026 0.97 15 20 0.0002 0.042 15.8 0.3 2 22 1045 1065 1045 1068 0.89 16 20 0.25 53 6.1 0.2 2 23 1104 1126 1103 1126 0.94 17 20 0.0044 0.94 11.6 3.2 3 23 1153 1174 1150 1174 0.87 18 20 0.00084 0.18 13.8 0.7 1 23 1182 1206 1182 1206 0.96 19 20 0.098 21 7.3 2.4 1 23 1211 1234 1211 1234 0.97 20 20 0.047 9.9 8.3 0.9 2 23 1265 1287 1264 1287 0.94
Sequence Information
- Coding Sequence
- ATGACCGACTCTCCGGTGCAATTGTCGCCTGAAGGCCCTGAAGGCGCCGGAGATGCCAGGAACTTCACCGCAGCTACGGAAGAGAACTTTGAAAATGCTTGTCGACTCTGCATGACCACTGATTTGGAAAGATGCTCTATCTTTGCTGTGCCACACGGACCTGTGCCTTTCATCGAGAAGATTCGCTCCTGTTTATCCATCCagGTTTCGACTAATGATAAGACATCTACTTTAATTTGTACAAACTGTGTGGAAAATGTGAATCAATGGCACGGTTACAAAGAGACATGCCTACAGTCACAGGACAAATTTATGCAATGGATGGTAAAAACTGGGACATTTCCTCATcaaACTGTTACAATAAAAGAGGAACCTGTAGATCTAGCTTATACGGAAGACCCGTCAATTGAGATCCTGTGTGATACTATGCCTCAAATAAACCAAATGCACATGAATAATGGCACTACTATGGTTGCAATACCAAACAACATCGATATTCTCACTGAAGAGAATTTTATATCACCTGCAAGCAAATCGAAGACTGTGTCCCCAATAAGGACAGTGAACAAAAACATTGAGAAGCCTAGATATGAAATTGATAGGAGTTTTaacataacaaatataaaaagtgaacCAATGGAAAGCGATAATGAATATAGCGTAGAAATAGACTCTGCAGATGGAAGTGAACTACTTCTTAATCCAATGGCTGTAGCTAGCGGTAAAGATGCGGACAGAGTTGTGGAAGCGGATTCTACACAAAAAGCTAAAAAGAAAATGCGACGTGGGCCACACACACATTATCGTGGAGCTCGTATCTTCAAAAGGAAGTGCATTCATTGCAATATCAATTTAAGCTCAAAAACTTCCTTCGCTAAGCACATGGCGAGGTTTCATGATTGTAGGACGTATAATAACGTACCTTCAAATGATCATTCACCTAACTTGCCTTCACCCACGAAGAAACTAAGAAAGCAGATGCCTGAACTGACTGAAAGACCAGCAGGATATAGAACGGATACTGTTGTAGATCAAACAGCCGGTATTAATAGATCTGCCCCATTGACTCcaatacaacaaaatattatcaGTCAATTGAAAACATATTCTTGCTACTCTTGCGAAAAACAATTTGATGATCGGCGAAGTActttaaatcatataaaacaGCATTTGCCAAACATTAAGCCATATACTTGTATCGCGTGCCTGATTCAATTTCCTGATCGAGATGTCTATAAACAACATTGTGCTCTATCATACAACTGCGCCATGAAAATTGCTATGGTAATTCCCAAACATGGTGTAGAAAAGTACTTTACGTGCAACATGTGCCTGCGACCAATGCCAAATCGCTCGGAACTTTTACATCATCTATCAAAACACTCAAACTCAAACAAACCATGTGAATCAACAGTTTCCTCGCTAAGGCCTCCTCCTAAACTGCGACCAATGGTACCTCAAAATTCATCACACTCTTTGATACCGGTTGATGATGGAAAACCGTCAGTAGCTCCTGAAATTCCTGGACCTTATGTTAATGGTGATCCTTCTCACAATCACATGTGCGATTTATGCGGCATGATCTACAGATACAAACCTAATATGTGCAAACATCGTGAAATATGCGAAACACTGACTGAATCAGAACGGACATCATACAGATGCGTACATTGTCGAATGACATTCCTAATCTTTAAGAAATTCCATTCACATCTCATCCAAGATCATAAAAAGAAGGACTTTGTGTGCTTCAATTGTCATGCTAAATTCGTAAATCCGAATGATTTCTTACTCCATCATGAGACTCATAAGCCATATTCATCACAGCACAGTAGAGTCGGGGAAAGGATGAACTATTCCACAGAGAGAAGCCTTCAAAGTGATCAATCACTTCCAGAAACAATGTTAGAGCCTCAGATGGCCCCTGAAACAGAATGGGATGGATACGCTGATGACGTTCCTGTCAATAGTATCACTGAAGAACGACATAATTGCGCATTGTGCAATATGGAATTTTCTACAAATGCAGAATTAACAGAGCATCGTAATCTGCATCTTAAGGTGAAAATTTACTCGTGCGTTATTTGCCGCAGCATGTTCAGCAGTTCTGGAGCACTAGAAATTCACATGAAAGACCATGGTATCGAAGATCCTAAGGAACAAAATGCAAACAGTTCGTGCGTTGAATATGGTCATGCACAGCAATCTCACGATAGTTCAGATCCAAACATGTCAATATCTTCTGATCCAGGTGGACGTAACATATGTCGAGATTGTGGTCGAACTTTTTCGAATCTCGCTAATCTCAGGAGGCACCTAAGAAACGTACACACTTACGCTTCTACGTTTATATGTTCCAAATGTGGAAAAGCATTTAAGAGCAAAGAAACTTACGAATATCACATCAAGACTGATCATAATAAGTCACCCAAGCCAGTGATGCGCTGTCCTAAGTGCCCGAGGACCTTCTCTTATCAAGGAAGTTTGATCGTTCACTGTCAAACTGTTCATAATGACCATCAAATGTCTGGATTCTCATGCGATATATGTGGAAAGACGTTTAAGGAAGAACAATCACTGAAAACGCACAGAGGATGGCATATGCGTACAAACAATCGACTAAGCATCGATAAAAATCGTATGGTGATGATTGACAATAGTACCCCAGTTGTCAGCACCCCAAAGCCAGCTAAAGCCAGAAAATCTTTCCCAAATCCGCAGCAACAACAGTTACTGACCCTCCAATGTCAAGTTTGCGACGATCGATTCGCTGATGTATCCGAACTCCGAAAACATCTCTGGGAAGTACACTGTTCAAGAAATAAATCAGAGAAAATGTTCGAGGAAGGCGAAGAAGGCGGGGAAGGCGAGGAAGGCGAGGAAAACGAAGGGGTCTCTGAACTACAGTGCCAACTTTGTCCAGATCTCTTTGCAGATGAAGAATCACTGAGAGCTCACATGGAATGGCATGAACAAAATCATGAAAGTGATGAACCGAAAAAGACCTTCTGCTGTGAAACTTGCGGTAAACATTATAGTAGCCGGAAGCTTTACTTGAGACACAAGAAGTTACACAAGAGTATACAGATAGCAGGAATGAAACTTCAATCCTTAAACATGAAGCGGCCAACGTGTGCTATCTGCGACAAGGCATTTGCCACTGAAGCTTCATTAAAGAGACACAAGTCTATGACCTCTCATTACCAAGCAAAACGAAAGCCGACAGATGGTCAGGAAGCACTTCAAATGAACTTAAAGAAAGAACCTGATTTAACTGTTGAGGTACCAATAAGAAAGAAGCCAGTTACGTGCCTTATTTGCAAATCAGTTTTCCCCAGCATGAGCGTTCTATACCGGCACAAACAGCTTGTCCACAAAACACACCCTAACAAAGACGGGTCGGTTCCGATGGACGAATGTATACCATTGCAAAGTTCAGAGGGTTATGTTTGTTGCAATATCTGCGGAAAACAATTTCCTGGTATTTCTAATCTTAAACAACACTTTTCACATAAGCACAAACAACCACCGAATACAGTGTTTCCATGCAAATCATCCAATTGTAAACTCGTTTTCAGCACACTCAGTGCACTAAAGAGTCACGAGACGACACATACATGTATGATTTACAGTTGCAACCGGTGTGACCGACATGTCTTTAATCGTGGTTCGATGGTGAAACATGTGACGACCCAGCACCAAGCAGAATGCGAATCCGGTGTCGATGAACAAACAATGTACTCGGAGACTGACCTGTCTGTCTACAAAGTCAAAGGTGCCACGAGCACAATGTGTCCGAAATGCAAAATTAAGTATCCAAACATGAGAGCTTTGaagattcattattttaagtttCATGAGAAACCTTGA
- Protein Sequence
- MTDSPVQLSPEGPEGAGDARNFTAATEENFENACRLCMTTDLERCSIFAVPHGPVPFIEKIRSCLSIQVSTNDKTSTLICTNCVENVNQWHGYKETCLQSQDKFMQWMVKTGTFPHQTVTIKEEPVDLAYTEDPSIEILCDTMPQINQMHMNNGTTMVAIPNNIDILTEENFISPASKSKTVSPIRTVNKNIEKPRYEIDRSFNITNIKSEPMESDNEYSVEIDSADGSELLLNPMAVASGKDADRVVEADSTQKAKKKMRRGPHTHYRGARIFKRKCIHCNINLSSKTSFAKHMARFHDCRTYNNVPSNDHSPNLPSPTKKLRKQMPELTERPAGYRTDTVVDQTAGINRSAPLTPIQQNIISQLKTYSCYSCEKQFDDRRSTLNHIKQHLPNIKPYTCIACLIQFPDRDVYKQHCALSYNCAMKIAMVIPKHGVEKYFTCNMCLRPMPNRSELLHHLSKHSNSNKPCESTVSSLRPPPKLRPMVPQNSSHSLIPVDDGKPSVAPEIPGPYVNGDPSHNHMCDLCGMIYRYKPNMCKHREICETLTESERTSYRCVHCRMTFLIFKKFHSHLIQDHKKKDFVCFNCHAKFVNPNDFLLHHETHKPYSSQHSRVGERMNYSTERSLQSDQSLPETMLEPQMAPETEWDGYADDVPVNSITEERHNCALCNMEFSTNAELTEHRNLHLKVKIYSCVICRSMFSSSGALEIHMKDHGIEDPKEQNANSSCVEYGHAQQSHDSSDPNMSISSDPGGRNICRDCGRTFSNLANLRRHLRNVHTYASTFICSKCGKAFKSKETYEYHIKTDHNKSPKPVMRCPKCPRTFSYQGSLIVHCQTVHNDHQMSGFSCDICGKTFKEEQSLKTHRGWHMRTNNRLSIDKNRMVMIDNSTPVVSTPKPAKARKSFPNPQQQQLLTLQCQVCDDRFADVSELRKHLWEVHCSRNKSEKMFEEGEEGGEGEEGEENEGVSELQCQLCPDLFADEESLRAHMEWHEQNHESDEPKKTFCCETCGKHYSSRKLYLRHKKLHKSIQIAGMKLQSLNMKRPTCAICDKAFATEASLKRHKSMTSHYQAKRKPTDGQEALQMNLKKEPDLTVEVPIRKKPVTCLICKSVFPSMSVLYRHKQLVHKTHPNKDGSVPMDECIPLQSSEGYVCCNICGKQFPGISNLKQHFSHKHKQPPNTVFPCKSSNCKLVFSTLSALKSHETTHTCMIYSCNRCDRHVFNRGSMVKHVTTQHQAECESGVDEQTMYSETDLSVYKVKGATSTMCPKCKIKYPNMRALKIHYFKFHEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -