Tnig012398.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichopria nigra
Gene Symbol
-
Assembly
GCA_030522945.1
Location
JAPYZR010006952.1:259-4491[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.033 7 8.8 2.2 1 23 426 448 426 448 0.98
2 18 0.022 4.6 9.4 0.8 2 23 474 495 473 495 0.96
3 18 6.3e-05 0.013 17.4 0.5 2 23 586 607 585 607 0.96
4 18 0.00022 0.047 15.7 4.4 2 23 673 694 672 694 0.97
5 18 0.00019 0.04 15.9 4.6 1 23 699 721 699 721 0.94
6 18 0.00069 0.15 14.1 0.8 1 21 727 747 727 751 0.92
7 18 0.25 53 6.0 1.2 5 23 829 847 825 847 0.92
8 18 0.00048 0.1 14.6 4.8 1 23 892 914 892 914 0.97
9 18 0.00033 0.069 15.1 0.7 1 20 919 938 919 940 0.94
10 18 0.034 7.2 8.8 0.3 2 23 951 972 951 972 0.97
11 18 3.4e-05 0.0071 18.2 0.6 2 23 1011 1032 1010 1032 0.97
12 18 3.1e-05 0.0064 18.4 1.6 1 23 1037 1059 1037 1059 0.95
13 18 0.00018 0.038 16.0 3.0 1 23 1065 1087 1065 1087 0.98
14 18 1.7e-05 0.0035 19.2 0.4 1 23 1103 1125 1103 1125 0.95
15 18 4.4e-07 9.3e-05 24.2 0.6 1 23 1131 1153 1131 1153 0.99
16 18 4.8e-05 0.01 17.8 0.2 1 23 1159 1181 1159 1181 0.97
17 18 0.00018 0.037 16.0 4.1 1 23 1187 1209 1187 1209 0.96
18 18 0.012 2.6 10.2 0.4 1 20 1215 1234 1215 1236 0.89

Sequence Information

Coding Sequence
ATGGACGCTGTAGAAGTAAATACGTCGGAACTCCCACAAAACGACAATGGTCTAGTTTCCGAGATGGAAATATGTCGAGTGTGTCTTGTTGCCAATCCCATGTTGCGTGATCTCTTCCACGACGATGAAGCTGCATCGCTGTCAGACAAGGCGATGAGTTTTACCAGTgtaaagatgttACCAAATGACGGACTGCCCTCAAAAATATGTTGTGACTGTGCAGACAAGTTAGAATCGGCATATGATTTCAAACTTCAAGTGGAACATGCAGACAATGTATTACGAGAGAGATTCAACTCCTTTAACATTAAGGCAgaactttttttcaatgatgACTTAAGTTCCCACAGAGACAGTGTAGTACAAATTCACACGCCATTTGTCAGAACTGCTGTTTCTTTAAGCGATCATACAAAAGATGACGAATCTTCATTGTTAAAACACGCATTAATGCAAGTTGAGACAGCACAAGAACAAGATGTAATTGTGCAGGCGCAATCATTGTACAAAATGGGAAGAACGTGTGATGCAGAAAGTGAAGTAGTCCAACATATTCAACATCAGCaatataaaaatctacaaaataattttaagatgcAACAGATTCATGAAGCGAATATTAGTAATATTCAACAACAgcaaatattgcaaatgtcaaATGAAACTCAAATGagagaaaattcaaaaattaaatcgaacCAAGAAATTACTAAAATAGTATGTATTCAGAAAGAAAACGAAACACACCATTTGCAAGAAATAAGGATCAATCAAATGCAAATGGAAGAAACTACTCAAAATATGAGTAAAGAATCAATCCATGGATTTCAAGGAAAACAAACGTCTCAAATACAATATACACAAGAAGAAGCAATACAaggtattatccgaaataaagcTCAATATAATGagaagatagaaaaaaatatggaTCGAACGTTGTCAGAAGATCAAGAATATGCTCTGGAAGAAGAACAAGATGAATCTACTGGGAAAGAAACATTCTCAACTgtacaaaattcttatatttctgATGTCACAgatattaaatttgaagaaagtaaagaaaatatcattaatgAAAGCATGTCATTGCagaaaacagaaacaaaaagtGAACAAGAATCACCAAATGAAATGCGGAGAAGTAAACGAAACTTGATTAAGAAATGTGTAAATACTGACAGAGACTCTGACGAAGAAAACTACTTTGAAAACTTGAATCTTAGCtcaagattaaaaaaagttCAAGCAGAAAAGtctgaaaaagttttttatatgtGTTATCTTTGCGACAAACAGTTTTTGTCTAAAGGAGTACTGAAAGAACATATGCATTCTCATGAAGAGGTCAGAAAAACACTTTTACTCACAAGAAAACCGCAAACAAAAATGCCTTCTTCtggaagaaaattaaataaatgccCCTACTGTGGAAAGGAATATCTTTATGTGAATTCCTACACCAAACATTTAAAGCAGcatgaaaaagaaaagtgtaataTAAAGCAAAACTcattttcatctgaaattaaagatGATACGTTGGGCtttgaagattttgaaaattctcaaAGTTCTTATGGGGGAGATGGAATGCAAGATGGTTTTGACACATcagatgaaaataatgaaaacgaaGATGTGGaacatgaaaaattcaaacacAGCCAAGCTGTCAAAACTGATAAATATTTAGAGCAAGTCGATACAAAACAAGAGATCCAAAAACACTGCATCAAACACGATTCCTTAAAGTGTAGTATTTGTGATAAAGACTTTGAGACTATGGAAAACCTAAAGGACCATAGATCAATTCATGTCATGCACGGTGTCCTCACTGATCAAGATATCAATGATGCTCAAGAACAGTCAAATATTATCGTCACTAGGGAAAACAATGAATTTActgatgaaaaacaaaatattaaaatacaacaAACTAGTGTTGATGATGAAGTGGAAGAAACGAAAAACAGTGGAGCAGATCAAGACTCGTCTAAATTGAATGATCTGAAATGTCCACATTGTCCAATGACATGCACTCAAAAAAATACTCTTTCCAGACATCTCGAAACTCACCGTGGTTTCAAATATGTCTGTAAAATATGTCATCAACAATTCACAAGAAAAGATCAATTTCGAAGACACAATGAACAGCATggcaaaataaaatcttttaaatgtaCTCAATGCAACAAAACTTTTGGCAATGAGCTCACTCTTCGAAATCATCTGATAGCTACAAATCATAAAACTATGATTCATGGTCATGAATATGATCCAAACAAACGCCTAAAGCGTGTAGCAGCAAAAGCAGCAcagaaaataattgataaaattagaaCTGAAGATGGTTTAGATGAATGTGACGATGATGACAGTGAATATGACCGAAAGTCACAAAAAGAAGTTGTAAATGACAACGAAATATTCACTTCAGTTCCTAGAAAACCTCATCAAAATAGACAATTAATCTGTATTACTTGTAACAAGAAATGTGTCTCGAAGCAGGTATTGGCAAAACATATGGAACAGcatgagaaaaatataaaacaagaaaagGTTGACCTTGAAAAGTTGAAACCAGTTATTGAAAAATACGAAGTAGGGGATAATGATCCCAATGACGATGATGACTTCGAAGGAGGTTTAGACTGGCCAATGGACAGTCATGAATGTACAACATGTAGGAAACGGTATAGTACTAAAAAATCTCTCCTTCGACATCAATTGCTGCATGAGGATCCAAATTTTGAGTGTGACATTTgtaatgtcaaattttatcgTAAAGATAAACTTAAAGCGCATTATGATAAGTGCTCAGAAAAAAATCCTGATCAagtaagaaaatgtaatatcTGTGGAGATAGCTTTGAAAATAACGACATTTTGCGAGAACATCGTGCAAGACATGTGACCGAAGGAATTCTTACAGAAGAGGACTTAAAAGAAATAGAACCATGttctgaagaaaaaaaagttactgAAAAAATTCCAAGAAAAAGAAGAACAGACATTGTTGGGCTTGAATGTACTGAATGTAACAAACAGTATACTTCTCGCAAAGGGCTTTTACGACATATACAGGTACATGAAGGAAAGAAATATCTGTGTGATATTTGCCCAAAAAAATTCTACAGACGTgaacatttgaaaattcatgTTGCTAAACACAATATGATAAAGCCGTATAAATGCAATCGTTGCACCAAACGGTTCATTAAAGAAGAACAGTTAACAAATCATTTGACCAAACACGATCGAGCTTTTAAGAAGACCAAAGATGCTGATACCTCAAAGCGTTTCCTCTGTGAAGTTTGCTCGAAAAGTTTCACACAGTCAACAACACTTGTTGCTCATCTGCGTGCACACAATGGCATTAAACCCTATGTATGCGAGGTTTGTTCTAGACCTTTTACTACTAACGCTTACCTTAAAATGCATATGAGGACTCACACTCAAGAACGGCCGTACATTTGTCAGTATTGCTCAAGAGCCTTTGCGAGAGCTGATACACTAGCCAATCATCTTACATCACACACTGGTGAAGCAAAATATCACTGTAAATATTGCCCTAAAAATTTCAGAAGACTGAAATCTCTTAAAGAGCATGTCTTCATTCACACAGGACAACGGCCATATGCATGCCCAACATGTGATAGAAGATTTAACAACAATGGTAGCCGATATGCACATAGTAAACGTTGCAAGCAAAATCTCGTGCAAAATCAAACGAGGACACAAACAGCTCAACAAACTTTGATACAACAACCACAACAGTCACAGCAAGAACAGCAGCACCAACAAACGCAACTGCAACAAACGCAACTGCAACATGTACAGATGCATCAAAGATTGCAACAAACAATGAGTCAAGCTCAAATCTTAAAAccacaaaatatcaaaacaattaCGATTACCAGGCCATCAGATTCAATGACTCAGCAGGTCTTACAACATCAGGAAATTATTATGCCCCTCATTCTACCACTTACGGTTACATTAACAGATGTTGGCGATGAAGTAATTCTACCGGAGAGTGCCAAGATATTTACTACAACTTGA
Protein Sequence
MDAVEVNTSELPQNDNGLVSEMEICRVCLVANPMLRDLFHDDEAASLSDKAMSFTSVKMLPNDGLPSKICCDCADKLESAYDFKLQVEHADNVLRERFNSFNIKAELFFNDDLSSHRDSVVQIHTPFVRTAVSLSDHTKDDESSLLKHALMQVETAQEQDVIVQAQSLYKMGRTCDAESEVVQHIQHQQYKNLQNNFKMQQIHEANISNIQQQQILQMSNETQMRENSKIKSNQEITKIVCIQKENETHHLQEIRINQMQMEETTQNMSKESIHGFQGKQTSQIQYTQEEAIQGIIRNKAQYNEKIEKNMDRTLSEDQEYALEEEQDESTGKETFSTVQNSYISDVTDIKFEESKENIINESMSLQKTETKSEQESPNEMRRSKRNLIKKCVNTDRDSDEENYFENLNLSSRLKKVQAEKSEKVFYMCYLCDKQFLSKGVLKEHMHSHEEVRKTLLLTRKPQTKMPSSGRKLNKCPYCGKEYLYVNSYTKHLKQHEKEKCNIKQNSFSSEIKDDTLGFEDFENSQSSYGGDGMQDGFDTSDENNENEDVEHEKFKHSQAVKTDKYLEQVDTKQEIQKHCIKHDSLKCSICDKDFETMENLKDHRSIHVMHGVLTDQDINDAQEQSNIIVTRENNEFTDEKQNIKIQQTSVDDEVEETKNSGADQDSSKLNDLKCPHCPMTCTQKNTLSRHLETHRGFKYVCKICHQQFTRKDQFRRHNEQHGKIKSFKCTQCNKTFGNELTLRNHLIATNHKTMIHGHEYDPNKRLKRVAAKAAQKIIDKIRTEDGLDECDDDDSEYDRKSQKEVVNDNEIFTSVPRKPHQNRQLICITCNKKCVSKQVLAKHMEQHEKNIKQEKVDLEKLKPVIEKYEVGDNDPNDDDDFEGGLDWPMDSHECTTCRKRYSTKKSLLRHQLLHEDPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNDILREHRARHVTEGILTEEDLKEIEPCSEEKKVTEKIPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCNRCTKRFIKEEQLTNHLTKHDRAFKKTKDADTSKRFLCEVCSKSFTQSTTLVAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNLVQNQTRTQTAQQTLIQQPQQSQQEQQHQQTQLQQTQLQHVQMHQRLQQTMSQAQILKPQNIKTITITRPSDSMTQQVLQHQEIIMPLILPLTVTLTDVGDEVILPESAKIFTTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-