Tnig004739.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- -
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010001666.1:11753-14001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.074 16 7.7 0.6 2 23 135 156 134 156 0.97 2 15 4e-06 0.00084 21.2 0.4 2 23 161 182 160 182 0.98 3 15 1.4e-05 0.0029 19.5 2.4 2 23 189 210 188 210 0.97 4 15 4.2e-07 8.8e-05 24.2 0.9 1 23 244 266 244 266 0.98 5 15 0.00064 0.14 14.2 0.3 1 20 272 291 272 294 0.94 6 15 2.8e-07 6e-05 24.8 1.4 1 23 300 322 300 322 0.98 7 15 2.6e-06 0.00054 21.8 1.7 1 23 328 350 328 350 0.96 8 15 3.5e-05 0.0073 18.2 0.6 1 23 356 378 356 378 0.98 9 15 2.1e-05 0.0045 18.9 7.2 1 23 384 406 384 406 0.97 10 15 2.9e-07 6.2e-05 24.7 0.9 1 23 411 433 411 433 0.97 11 15 0.00017 0.035 16.0 1.0 1 23 439 461 439 461 0.97 12 15 4.7e-06 0.00099 20.9 5.6 1 23 467 489 467 489 0.98 13 15 8.1e-07 0.00017 23.3 1.9 1 23 495 517 495 517 0.99 14 15 2.2e-06 0.00047 21.9 0.9 1 23 523 545 523 545 0.99 15 15 9.5e-05 0.02 16.8 3.8 2 23 552 574 552 574 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATTCGGCTGGGAAAGATGAGTCCTTGGATGCATTGCCTATGGACTGTCAAGTTCTGGATGAGAATATCGTAAGTGTTGTACTCAAAGAAGAACCCGGAGGACGTTTTGATCCTAACTACATGGAAGACATATGTTCAGGAACTTTCGATAAGGTGTTTCTACCTATTGATAATCATGAAGTGGATTTTCCGGATGAAATGATAAAATTGGAGTTGGAAGGAGAACCAGGCAGTCACCATCAATGGGCAGCGCAACTTGCTAGCGCAAGTTTGTCAGATAAGGAGGATGGACCGGTAAAAAGGTACCTTGCAAATGTTGATCTGGAACAGGGGGCTCCAGGAGAGCACTACTTAGCCGGCACAACAAACCCGCAGCAACAGAAATTCTGCAAAATTCAATGTACAATATGTAAGAAATGGTTTTTAAACAACGACTCAATGGTGACGCATCTCAAAATGCATTGTGCTGGAGACCAGTGCGAAGTATGTCAGCAGACTTTTCCAGACAATTCAGGTCTGCATGCACATATGTTAACGCACGTTGGCATGAATCCAGTGGAGTGTTCCGTCTGTCAAAAAAGGTTTGCTTACAAATGGTGTTTACGCAATCACATGCAAACGCATCTACCAAATAAACCTTTTGAATATGATTCGCTGCAACAGGCATTCTTGAAGAAGTACGGTGTGAACGGTGAAAATTCGATACGTGACGACGATCGACCGTACACCTGTCAAGTTTGCCAAACGACCTTTCGTGAAAAAGGAAACTTAAATCGGCATATGCTCGTACATTCTGGTGAAAAACCGTACAAATGCGATGTGTGCTTTGCCACGTTCCGGGAGAAAGCAAAACTAAATGTTCACATGCCTGTTCATGCTGCTAACAAGCAGTTTAAATGTACCATGTGCAATAGAGCATTTTCTCAAAAGACTGCACTGAATAATCACATGCTGTCACATAGTGGTGAAAAACCACATGCGTGCAGCGTTTGTGAAAAGACTTACAAAAGGAAGTCTGAGTTAATCAGACACACAATGATCCACACCGGGGAACGGCCTTATGAATGCAAAGAATGCTTAATGACCTTTAGAGAAAAGGCGAAGTTAAATTCACACATGTTAGTTCACACTGGTGAAAAACCTCACGAGTGTCATATTTGCCATAAAGCTTGTGCCCGAAAGTCAGATCTGAATAGTCACATGCTGTCACATACGGGTGGTCAGTACGATTGTAAAGTCTGTGAAAAAATCTTTACAAGAAAATCTGATCTGAATCGTCATACCCTCGTTCATACTGGAGAGAAACCTTATGCGTGTGAGCACTGCGAGATGGCTTTTCGAGAAAAGACGCGGCTGAACTCGCACATGCTTATTCATACCGATGATAAGAGGCACACTTGCCACATATGCCAAAAGAATTTCCGCGAAAAATCGATGCTCAGGAAACATATGCTAATACACACAGGAGATCGGCCGTATGAGTGTTACGTCTGTCAGAAAACCTTTACCCAGAAAACGACATTGAACAGTCACATTCTCACGCATATCGACGAAACGTCTTACGAATGCAGCATTTGTAAAAAGATTTATCGCGAAAGATCCGCGCTACGAAAGCATCTGCTCACACACACAACAGATAAGAGCAACGAATGTCCAATTTGCCTGAAGAAGTTTTCTCACAAAACTGCGCTGAACAGTCACATCTCTACGTGTCACAGTTTGTAA
- Protein Sequence
- MEDSAGKDESLDALPMDCQVLDENIVSVVLKEEPGGRFDPNYMEDICSGTFDKVFLPIDNHEVDFPDEMIKLELEGEPGSHHQWAAQLASASLSDKEDGPVKRYLANVDLEQGAPGEHYLAGTTNPQQQKFCKIQCTICKKWFLNNDSMVTHLKMHCAGDQCEVCQQTFPDNSGLHAHMLTHVGMNPVECSVCQKRFAYKWCLRNHMQTHLPNKPFEYDSLQQAFLKKYGVNGENSIRDDDRPYTCQVCQTTFREKGNLNRHMLVHSGEKPYKCDVCFATFREKAKLNVHMPVHAANKQFKCTMCNRAFSQKTALNNHMLSHSGEKPHACSVCEKTYKRKSELIRHTMIHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCKVCEKIFTRKSDLNRHTLVHTGEKPYACEHCEMAFREKTRLNSHMLIHTDDKRHTCHICQKNFREKSMLRKHMLIHTGDRPYECYVCQKTFTQKTTLNSHILTHIDETSYECSICKKIYRERSALRKHLLTHTTDKSNECPICLKKFSHKTALNSHISTCHSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01488865;
- 90% Identity
- -
- 80% Identity
- -