Tnig020403.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- lov
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010014324.1:4643-6827[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-15 3.4e-12 47.4 0.0 1 44 512 555 512 556 0.94
Sequence Information
- Coding Sequence
- atgtcaagtataGAAGGGAGTTCTGACATGGACTTGAATTCTCACTATTCGTTACGTTGGAACAACCATCAGGCACATATTATCAAGTCCTTTGAAGCTTTGCTACTTGAGGAGCATCTCGTTGACGTGACGCTTGTCTGCGCTGACGCCAGCATGAAGGCGCACAAGGTCGTTCTCAGTGCTTGCAGtCCGTTCTTCCAGCGAATTTTTGCGGATCATCCTTGCAAACACCCCGTGGTGGTGGTGAATGATTTTCCGGGGCGCGAGATTTCGGCGCTGATCGACTTCATGTATCGTGGCGAAGTTTCTGTAGGCCGCGAAGATTTGTCAAGTCTCATGAAAGCAGCGGAAAGCTTGCAAATTCGAGGTCTTTCCATCCCTTATCTCCGACTGACGAGTCCGCCAGGAACCCCGACTACAGATTTGATGATGGGCGACCTTTCCACACCAGACGGTGCAAGTCAAATTGTGGCGCCAGAAGAAGAAGACAATATGTCGGAACACGCAGCTCCACCGATAAGTAGAGAAATTGATTTGCAACGACAACGGGACcagagaatgaaaaatataaacttttctcAGCGTTATCAACGCGAGTCAAGTAGCTCGCCGTCGATTCCAAGGCGGAAGCAGGCGAGACCACGAAGGAGATCCGGTGATTCCGTGGCGCAAGATTTAAGTAAACCTCACACATCTTTGTCTTCAAGCCCCGAAAATATTAGCCTGAATCtcagcaataataataataaccaacATCAACGTGAAACTCCAACTCATCAGCAACACCATCAACATTTGAAGCCTCACATTCACCAACTAGCACTGCAGCATCCAATGCAACAAAGATCACCGGTCAATAACCTGAGTCAACACGAAGATATGGCGGAAAATCTCTCAATGAAGAGAGACGCGAAACATTCACCGTCGCCTTCCGCCGAGACAGCATACAAGTCAGACAGTGATGCCGTAAGCAGCCCTTCGTGTTCTCCCGCAGCCAACAGTAATACTCATCCGGACGGTTCACTGCAAGATCTGTCGACGGCAGGTCTTTCAGGTATAACGGGTCTCACTTTAACGCCTCCGCATCAACACAGTGATTATCTGCAAAACTTGGGACATCTCGTTGGAACAGCCCCAGTCTCACAATGGATGACTCAACAAAGCCCGTTGGATCCGGGACATCATCCGAGAGAAGGAAGCCCGTTTTCTAAACATTATCCATACCAACAAGCAGATGATCGAAATTTAGCAAGGCCGCAGGTTGGCGATTATCAGCTTGACGGTTTGCCTGCTCTTGGTGGTGGTCCTAGTCTTTATCCCCATGGACCACCACTTGAGTTGCACGATAGCTTCAAGGCACAAAGCATTCATGGCTTCTTTATTGGTCAGAACGTTGGGGCGCCGTCGAAAAAATCCAAGAAACACAGAGGTGACGGCCTTCCACACAGAAGGTGGAACGATCATAGAGGGCTAGCAGTGTGCAGACCAAAAGGTCAGCATAGTGCACCACGCGGAGGACCTCCCAGATCGTGGACGAATCATGATCTCACACAAGCTCTGACTATGGTGTGGAATAAACAAATGACTACGTCACAAGCGAGCCGCGTCTACAGTATTCCCTACAACAGTTTATTGATGTACGTCCGAGGTAAATACGGGAAAAGTCTGAAGTTAGAGCAGCTTCGAAGGGATTGTACCGGCGAGGTTATGAACTGTAACAACAATATTGTTAAGGCCGGAGAATTACCTCAGTCGAGGTTACCATTGCCGCATCCGGCTGAGGAAGGAAACTTCACGCATCCACTTCTCGGGGCTAACTTACCACAAGGCTTCTTTCCAGAATTCAACCCGAGTTTTCCAGTGCCGGTCAGCATGGTCCATCTGTTACAACCAAGCGATCAGAAATCGTTCCACTCGCCATCGAATACAGGCGGTTGCGGTGCTAGCGATCTAACGTCAAAAAGTAGAACTCCGTCGCCTAATTTGCAGCAAAACCATGATGTTATGCCTCCGCCAACGCATTCAGCGCCCGCGCTGTTACAGCAAAACGGATCCAATTAG
- Protein Sequence
- MSSIEGSSDMDLNSHYSLRWNNHQAHIIKSFEALLLEEHLVDVTLVCADASMKAHKVVLSACSPFFQRIFADHPCKHPVVVVNDFPGREISALIDFMYRGEVSVGREDLSSLMKAAESLQIRGLSIPYLRLTSPPGTPTTDLMMGDLSTPDGASQIVAPEEEDNMSEHAAPPISREIDLQRQRDQRMKNINFSQRYQRESSSSPSIPRRKQARPRRRSGDSVAQDLSKPHTSLSSSPENISLNLSNNNNNQHQRETPTHQQHHQHLKPHIHQLALQHPMQQRSPVNNLSQHEDMAENLSMKRDAKHSPSPSAETAYKSDSDAVSSPSCSPAANSNTHPDGSLQDLSTAGLSGITGLTLTPPHQHSDYLQNLGHLVGTAPVSQWMTQQSPLDPGHHPREGSPFSKHYPYQQADDRNLARPQVGDYQLDGLPALGGGPSLYPHGPPLELHDSFKAQSIHGFFIGQNVGAPSKKSKKHRGDGLPHRRWNDHRGLAVCRPKGQHSAPRGGPPRSWTNHDLTQALTMVWNKQMTTSQASRVYSIPYNSLLMYVRGKYGKSLKLEQLRRDCTGEVMNCNNNIVKAGELPQSRLPLPHPAEEGNFTHPLLGANLPQGFFPEFNPSFPVPVSMVHLLQPSDQKSFHSPSNTGGCGASDLTSKSRTPSPNLQQNHDVMPPPTHSAPALLQQNGSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01489533;
- 90% Identity
- iTF_01489533;
- 80% Identity
- iTF_01489533;