Tnig017724.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- br
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010011626.1:165-2878[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4e-06 0.011 17.0 0.0 2 38 205 241 204 247 0.84 2 4 1.3e-10 4.2e-07 31.1 0.0 2 41 255 294 254 298 0.85 3 4 0.063 2e+02 3.3 0.0 7 34 312 338 309 344 0.77 4 4 7.7e-12 2.4e-08 35.1 0.0 4 40 369 405 366 408 0.94
Sequence Information
- Coding Sequence
- ATGTCTGTGACAGTCGGCCCGGAGCAAGTGGATTCGAATTACTATTTCAAATGGGACGATTATCAGAATCACCTTACCGAGGTTGCTCGTCAGCTTCTCGAAAACGATTCATTGGTCGATGTTACCCTCATTGCCGAACGCGAGCGAATTCCCGCTCATCGCATAGTTCTGTCTGCCTGCAGCactttatttcaagaGATTCTGAGTCAAGTCACGGAAGACCACCCGACTATTATCATTAGTGATATCTCTGCGCAGGATGTTAGATCCATCGTTGAATTTACCTACCATGGTGAAGTTCGCATTcctgttgaaaatattaataacttattAGATGCAGCTCACTCTCTAAGAATCATCGGTCTTATGGATattgATGGTTTAGACGAAAGTGATACTGGTATACACTGCAAGGACCTCAACCAGGAAGGCATTGAATCTTTTGTCCAGCTTAATGATATGGAAGACACAGTGCTTCAAGAACTTAGCCAAGAATACGATAGTGATAAGATTATTTTAACTGAAGGCCAAGTTGAATCTGAAGGAGATTCCACGTTGTCACCTAGTAAGAAACGAAAACGGCGGCGAGATTCTAATAAGAGAGATTATAGTGAAGAAATGTTAGTTTCTGCCATTAATGACTTATGGGCTGGACAAACTTTAATAGAAGCTGCCACAAAGAATAACATTCCACGTTCTACTTTGTACATGCGTGCAAAAACGTTAGGAATTCATCTTAATGCTTCCAGGAATGAATATCCACCTGAATGTATAAAAGCAGCTATAGATGCTGTGATGGGCGGTTCAAGTTTGCAGCAAGCCTCGGAAAATTACAGAATTCCAAAAACTGTTTTGTGGAGGAGAATCCAAAAGGAAGGATATCACGTTTTCCGTTCCGATATGAAACGAACATATTGTACAGAGAAGCGAGAAGCAGCTGTGCAAGCTCTGGCTAGAGGGGAGAATTTGACCAAAGTCGCTTTagaatttaaaATTCCAAAAACAACCTTATTCAGAGATAAAGCTCGATTAGTGGATGAAGGAAAATTACCTCTATCATTttggaaaaaacgaaaaacggAAAGCGAAGAGTTGAAAAAGAGTCGTTTGGAAGAGGCAGTTGCTGCTTGTAAAGATGGTCATATGTCTCAAGCCACTGCTTCTCAAGTATACCGAGTACCAAAAACCACAATATGGAGACGTCTTCAACGAGAAGGAAAAAAATATGACAGATCTGTGACAGGTAGAAAACAGCCTAAGCAAGTTATATTGTCTTCTCCAGAAAAAGATACCAAAATGGAGAACAACGAAGGCGATTTTGATGCGTATTGCGAgATGCCGACAGAAATACCTATCACATACATTGATGGAAGTAGCATTCCAGAAGATTCAGTGATTATTCTAACGACTGATGACGTAGAAGGATTGAATTTAGAAGATGGCAGATCAATAGTCGTAAATTCAGATCCTGGACAAGAATTTATATCTTGTGGCATCAGTTTGGGTGATGGAACAACTTTCTGTCCACCAAAAAGTTAA
- Protein Sequence
- MSVTVGPEQVDSNYYFKWDDYQNHLTEVARQLLENDSLVDVTLIAERERIPAHRIVLSACSTLFQEILSQVTEDHPTIIISDISAQDVRSIVEFTYHGEVRIPVENINNLLDAAHSLRIIGLMDIDGLDESDTGIHCKDLNQEGIESFVQLNDMEDTVLQELSQEYDSDKIILTEGQVESEGDSTLSPSKKRKRRRDSNKRDYSEEMLVSAINDLWAGQTLIEAATKNNIPRSTLYMRAKTLGIHLNASRNEYPPECIKAAIDAVMGGSSLQQASENYRIPKTVLWRRIQKEGYHVFRSDMKRTYCTEKREAAVQALARGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTESEELKKSRLEEAVAACKDGHMSQATASQVYRVPKTTIWRRLQREGKKYDRSVTGRKQPKQVILSSPEKDTKMENNEGDFDAYCEMPTEIPITYIDGSSIPEDSVIILTTDDVEGLNLEDGRSIVVNSDPGQEFISCGISLGDGTTFCPPKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01488821;
- 90% Identity
- iTF_01489532;
- 80% Identity
- iTF_01489532;