Tnig026539.1
Basic Information
- Insect
- Trichopria nigra
- Gene Symbol
- -
- Assembly
- GCA_030522945.1
- Location
- JAPYZR010022110.1:1-682[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00021 0.65 11.3 0.0 26 40 2 17 1 20 0.82 2 4 4.5e-13 1.4e-09 39.0 0.1 2 39 32 69 31 72 0.94 3 4 1.5e-19 4.7e-16 59.7 0.0 2 45 87 131 86 131 0.97 4 4 0.0049 15 6.9 0.3 1 12 138 149 138 149 0.93
Sequence Information
- Coding Sequence
- ACATTTGGAATTCCATCCACTACCCTGTGGCAACGAGCCCACCGATTGGGCATCGACACGCCAAAGAAGGACGGACCGACCAAGTCGTGGAGCGACGAGAGCTTGAATAACGCATTGGAGGCTTTGCGTACCGGGACCATATCCGCGAACAAAGCGTCGAAGGCCTTCGGAATACCGTCCAGCACCCTCTACAAGATCGCGAGGAGGGAAGGCATCCGGCTGGCGGCACCTTTCAACGCGAGTCCAACGACTTGGTCCCCAGCTGACCTCGATCGCGCCCTCGAGGCCATACGTTCCGGTCAGACCTCGGTGCAGAGGGCATCGACGGAATTCGGCATCCCGACGGGTACCCTCTACGGCAGATGCAAGCGCGAGGGTATCGAACTAAGTAGGAGCAATCCTACACCATGGAGCGAAGACGCCATGACGGAGGCCCTCGAGGCCGTCAG
- Protein Sequence
- TFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00687083;
- 90% Identity
- iTF_00687083;
- 80% Identity
- iTF_00687083;