Tdro026391.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059583.1:15727934-15738752[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0022 0.91 12.4 0.7 2 23 1055 1077 1054 1077 0.94 2 13 4.8 2e+03 1.9 0.5 2 23 1111 1132 1110 1132 0.95 3 13 2 8.5e+02 3.1 2.4 3 22 1314 1333 1313 1333 0.95 4 13 4 1.7e+03 2.1 0.4 3 23 1354 1374 1352 1374 0.95 5 13 0.057 24 8.0 3.7 1 22 1452 1473 1452 1476 0.90 6 13 0.079 33 7.5 0.8 1 20 1513 1532 1513 1537 0.87 7 13 0.2 83 6.2 0.3 1 23 1556 1578 1556 1578 0.96 8 13 0.068 28 7.7 0.4 1 23 1631 1653 1631 1653 0.95 9 13 0.0054 2.3 11.2 0.9 3 23 2028 2048 2026 2048 0.95 10 13 2.8 1.1e+03 2.7 1.5 1 23 2239 2262 2239 2262 0.94 11 13 0.058 24 7.9 0.1 1 23 2368 2392 2368 2392 0.97 12 13 0.057 24 8.0 0.1 1 23 2403 2428 2403 2428 0.96 13 13 0.00029 0.12 15.2 1.9 1 23 2430 2452 2430 2452 0.98
Sequence Information
- Coding Sequence
- ATGTCGGGTGAAGATCCTGAAATTCCAACGGAAACAGAGCCATCAACATCTGAGGCACTGGAACCAAATGTCAGCGGAGAGGAAAAGAATGGAGAGAATTCAGCTGAACAAAACTCACCTAAgaagaaaaatactaatactcTCTTTGCCGAAAAAATGAGGATGCGAAAAAAGGAAGGAGACGTAACGAAACCGTCGGAGCCAGGAGACACATCCACATCACACAAAGCACTTTCTACGGATACAGAAAGTGTTGTAAAATCATCCGCTTCAAAATCGATTAACAAAGTTAAAAGTCGAATTAGACGCAGAAATAGGCAGTGGAGTAAAGGTGTACTggttaagaaaaagaaaagctCAAATTTACTTAGAAACTCGTTGGATGGTCCACTATCAACAGAAATCCATGAGGCATCGAAGATGCAAAAACCGGACGTAATGCCCAATGGCACGATAAAATCAAATAAGGTAAAGCCTCAAGCGAAGCAAGAAGAAGCTGGTGGAACTAGCAAACAAAACGTTACCGCGGAAGACGAACAAGAAGAAATTCCAGTAAGAATGACGAGGCGTTCGCGCGCATTGCCAGTCAAGCAAGAAAATAAAGTTTCGGAACCTGAAGTTTCAGCGCCGGAAGTTCACGATTCGGGTTGCAGGCGTACCGAACCTTTCGTCGGGAAGTTGAAGACTAAAGAAGATAGAAAAATGGCTCTcgataatgaatttaaaataagcaTGATGCCTATCAACGATGCAAATTGTTATTCGGGTACAGCTTCCACCTCGAAAACTGAGGCGCCTAGCGTAAAGGAGTCTGTAAAAAAAGATGTAGCTAGTACGTCAAAAAATAGGGGTTCAAGTTCTAAACGGAGTGCCCCTACTGAAAAAGTGTCGggtgaaaagaaaaaagtttcgcAAGGTAAAAAAGAAGCTCCTAAACAAAAAAAGGAATCTTTACGAGAAAGGAGAAGTCGAAACGTCAACACACCTGTTCCTGATAGTACAAAACAAAAAGAGAAGTCTGAACCTTTGAAGGAACTCAGAGAAGATAAAGAAACCAACGCAGACGAAGCGAAATCAACTTCGGAAGGTACGACTACAGAGAAACGAAGGAAAACAGTGTCGAAGAAAAACAAAGCCAAAGAAGTAGAAGAAGCAGTTTGCGAAGATTCAGGTTGCAGACGTACAGAACCTTTTGTGGGTAAAAGAGTTTACCAGCCGACGCCAGTGCCAGAATCTCAGAAAGTAGAAAAGTTAGAACCGCAAGAAAATATTACCAGTAACATAAGTTTGAACGAAAGTAAAATAGACGATAGTGTAAGTAGGAAAGAAAGTGACGAAATAAAAGACAGTGACAAAAGTATAAAGGAAAGTGAAAATGTGAAAGATAGTGTAGAGACGGAAAGTACGAAAGAAACAAAATGTGTCGAGGAAACAACTTTGAAAGAAACAgaatgtaaaaaagaaagtgaaaaAGAAACCGAGTGTTTAAATGAAAGTGTTCCTGCGACAGATACCATAACCGAAGCTACAGTCGAGGACAGCAAAGAAGAAATGAGTGCATTAATCGTTACCGCAAATACCAGTGATAGTGATTGGAGTTGTAAACGAACAGAACCGTTTGTAGGAAAAGTATTGCGACACGGTTGTAGCACCGAACCTGAGAAAGTCGAGGTAGTTCTCGAAGAGCCAGGTTGCAGCAGGACGATACCGTTCGTTCGACCTCATTTGTCAGCGGAATTAAACGAAAAGTACGAAAAACAAAGAGAATCTAAAGCAACATCCGATACGGAAAAAATAGAACCAGATTTGCAGGAATCGAAGAAACGTCCAAGAACACCTACGAAAGACATCGATACAGGAATGCCAgcacctaaaaaaataaaaactaaaaagaaactTAATAATTCTGATTGTTCGAAATCCGAACCAAGTCCAGCGTCACCTAAAACACCGTCAAAGGGTACAACAATTTGTGGAATGTTTTCTTTGAATTGTACGAAACATGCTCACCATCACGATCAAATCAATGGTTTAAATATATCATCCTTGAAAAAACTTGAAGTAAAATTGTCGAAACTTGAACATTCGACAGATTTGGAGGTTATGAAGTGGCGTTCGTTGAGGAAGCAATCGAAACGTAGACGTCACATTTCAACAAGTTCGGAAActccattaaaaattaacgagaATAATGTCGAAGCTATGGAAGTCGATCCGCCGGCAATTAATTCTGTTCAGCCTGTTGTACAATCTGAAGATATTCCTTGTGTAGCACCAATGGAATCGACATTGGTTGAGCTACCAACGGAGAATATTCACGAAACGGAAGTGATGAAGTTGCAGGAGACTCCGAAAAGAGCACCGTCGAAACATCGGAAATCGACATTGAATTTGATCTCGAAGCCAGATCCTCCGCAGGATGTCCAACAGTCATCGGAAGTAAGAGACTTGAAAGTACAATTGATAAGACTGGAAACTGTTCAAGGTTCATTCGATAACGATTATTCAGCTAGCGAAATTGAaagtttaactaaaaaatatatggatTTTCTTATGAATTCAAACTTTTCGTGTCAAGCATTGAGGAGATCAGTAAAAGACTTTCAAAGTTCAGAAGAGTCGGACGATGCTTATGTCGAAGACACCGATTCTGATAATTTGGTACCTCGACCTCGGACGAACAGTCAAGCAAGAGACGATTTGATTGCGATTGAAAGGGATGCATTGTACACCGATAACGAAGCAAATGATTACTCGGATATAAAACCATTGATTATTCACGCGTCTGACGTATTTGCCTACGATAATGGAATTATCGATCTCGCAGCGGAAGAAGAAGCAGCAGAGGCTGTAGACGCTGCAAAGGCATGTGCCAATACAGGTGCGCTTAACAGCGGTTTCGATAAAGCGACACTCGATTCGGACGATGTTGCAGCGCAAAATCTCCGGAATCAAGAATCTAGGAGTAAAGCAGCTGTACAGATTTCGGATGTTCTACATTCTTCAGCGAACATTTCGAATAAATCAAAGATTCCCACAAACGATGTCAGTATTGATAAATCTAATGTATCAAGCGAGGAACTTGCGAGTAACGAGGACGAATCGTTGACCGAATTGTTCAGTCAAGCGAAGCGACGCCGGATTCATGGTATTAATGTTATCAAATGTacaaaatgtgataaaatatttgtaaacgagaaagttttacaaattcatttatTGCACGTTCATAAGGAACCCAAATTGAACGTGAACGGCACCAGCGGAACGCCAAAACCAAAGAAACAGATAACTTTGACTCGTCGGAAATATACTTATAACAACAGTCTTCAATGTAACGTTTGTTCGGCTGTTCACGCGACCAAAGAGCGATTGTTCGAACATCTTGTGACTCACACAGAACAAGAATTGCAAGAAGCGTATAAAAGCGCGACAGAACTGAAAGAACGTAAGGATAGTTCCGTTAACGAAACTGAGAAGAATAGCTCTTCCGATCAAGCCAATGCAGATGAAGAAGCGTTAGTCAACAATGTAGAAACAATAATCAACGATTCCGAAGTGAGTACCAGCGAAGTTGAAGCCAACGCAGCACAAGCAAACGACGCGCAAGAAAATGCCGACGTCGAAATGAACCTGcagcaaaattcagaaaattcgcAACCACCCGTAAGAAGACAGAGCACTAATGTGAATACTAACGTACAAGAACAAATTCCTAAGGTTGGCGAATTTGCGCAAGTACtgttgaaacaaaattctgAACCTGTAGAAAACCATTTGCCACCGTCTGTTAACGATCGGCCAGATTGGCAGGCTGTTGTGCAGCAAGCTGAAATTAAACAGTCGGATCTTGTTAAACCGATTACCGTCTGTCCTTGTCACAGAAACGAAACTGCCGGACTCAGTACTCTGGACTTGCAGATTGAAATGGTTCTTCTGTGTAAGACTTGTAGAGTCTTGTTCCGTAGAAGGGATTGCTTCGAAATTCATTATCGTAGCAGCGAAGAATGTCAGAAGGGAAGGTCAGACTACGTCAATGTTAGAGTGCCAAAATTATTCTGCAGCAGTTGCCGTTTCGTGTTGAATTCGTTACCGGAGATGCGCAAACATTTGGAGATGCATGCTCGACAAAACTCTCAGGGCACTGTTACGTTCTTGTGCAACATTTGCAAAGTGGCCTTCTTCGgtgttggaaatattttctacaaCCACTGGTTCAGTCACAATAAGGAACCTTTATTCGTCGCTAGTAAATACAGCTTTCCAAAATTGTCGGTGGTATCCGTGTCTGATGAAACTTCACCTTCGCTATGTGGATCGAGGAATAGAGATGGATTCTTCTATGTTGCTGAACATGTTTGTCGAACTTGCAGATTACCATTTGCGTCGGAGTCGGATTTACGCAGGCATCATCTATCACCCTGTCACGCCATAGAACTGAACCCCGATACTAGAAGTATACTTTCGACAGATAAATCGTCACCTGTGCAATACGCCACGGGGAAAGTTTCCATGCCTGCTAACCTCGTTGTCAGTTATTTATGCGATATTTGCAAAAAGTTTTTCGAAAGCAAAGCATTGTTCGACCAGCACAATTTATCTATGAATCATTTAAAACGTACGCAACCGCGTTGTACTGTAGTTGGTCACGGACCAGCTACTAGGTACGTGTGTAACGTCTGTAAAAGTGCATTCAAGCAAGTGCGTGGGATGAAAGGTCATTGGGAGAAGCACAGCCCGGTCGTGGAATTGTACGCTTGCGACAACTGTGCCGTGTTACCCGTAGGCGACTCCTCGCAGTTTACTTACGATCAATTCCAGAAACATTGTTCTTGTCGGCACGCAAACGATGTGAGAATTACATGTAACGTTTACTTTACTATGGCAAAGCACGTCTGCGGTGCTTGCAAAATAGGATTCGAAACCGAACGATCGTTGAAGGAGCATCAGCTTTTACATAAAGGTGCGACGCCGCCTCAGAATTTATCAATAGTTCAGAAGGGCGGCGCGACGTTAACTCCTATCGCTCCCAAGGAGAGTTCTGCCACACAACATAAACACTCGAATAGTGCTACTACGACAGGGTCCACGGTCATTTGGTTAACCGATAACCAAACAACAGCAGATGGTGGCAAACAGCTGTATCCATTATACGTTAATGTTCTGGATGGTAAAACTAGTTACGGCGAAAAAACTCGAATCGAAACGAATCGGCCGAATTCTGCCGCGTCAAATGTTCTAGCAGGACGGTCTTCCGGGACTCCCACATTGGGACATCTCAAGCCAATTGCGATTCAGGGAAATCAAGCAATTCTTTCCGAGACGGATAGTTCGGTACTTCGACAGATGCTGAACAAGGAGCGGGCGGAAGAAAATGCGGGCCAGGTCGATAGCGACAACCCATCGGAAACTCCGATGCCCAAAATAACGAATGTCGAGACCGTGATCGATCTCGTGGATTCTCGGTCAAATAGTCCGGCGGAGAATGAAAACAATAACAGTGCCAATGAAGAAGGATCGACGGATCCAAAGGACTCCGCAAAGACGAAGTATATGACTAAAGTGAAtccaaatttcgaaaagttattGATCGCGGAACGATCAAAAGCAGCGATTGCGAAAAGAGCGGCGGAGAAAAAGAATTCCCAAAATGCCACAAAGGCTTCTACTTCGCCAACGAAGGAACCTCCGAGGAGGAGCGTAGAGGAGGTGCGGAAAAGGATTCCATCCGATGTTGAAGTTATCACCATAGCTGAGAAGAAATCGACCGCCCAGGAGAAGGTTAAGGCTGCGGAAGGAACTCCCGTCTCCAGTCCCCAGCCGTTCGAAATTGTTCTGGTCACCGAGGACATTGAAATGGACAATGTTAATCTGGATTCCGGCAGTACATTCGTTCCAAGACAAGGCCAGAAAAATTATCCACGAAGCGCGTTAAAACTGGAGTCTAATAGCGAATTGAGCGTAACTACCATTAACAATTCAAGCGGTAAGGCGACCAACGACAGTGGTACCGAGAGCTCATCCAAATCATTTTTGAGGGTGCGAAGCGTCGCGGAACTCCAGAAGATCCAATTGCATCTGTGTTCCTTCTGCGGAGTGAGCTTCGACAATTGGCGGGAGTTCGAAATCCACTCGAAAGTGCATTCTAAGGTGGACAAAATTACCAATAAGACCAGCGATCTTCGTATCGTGGAGACGGAGTCTATATCGCGAAAGGAATTCGCGGAGACGCCCTCCAGTTCTGTATTACCGGTACAAATGATCTCTCCTATGGTAACCGGGCAAAATTCAACACCGAGTGGCTCAACAGGGAAGAATAAGGAGCAACCTTACTGGTTCGCTTCGTGCAACAGCGGAGAAACGAGAAACGCGGAACTGAGCCAGAGCGAGAGTCCTGGAGTTTCCCGGACGCAGGAGCCACCGCCGTCGTATTCGAGGACGTCGGGAGGTTTGTCGCGAACTGGACCACCTCCAAACTACCCTAGCGGCGGAGCGGCGCGAACTGTCGCGATACACTTGCCGGAGCGCAACGTGAACAATGCCCTCACGAAACGGCCATCGGGAGCGGCTACGCGAATTCCCCAAAATCACCCCAAGGATCCGCCACCTCTTGCGGCGTACCCCGGCTCCGAAGAAATGTTCGGGACGAATCAAACGGTCAGATCTTCGACGTCCACTGAAATCGCCGCCAGTGGTGCCAACCAACCCAAAATGTACATGTGCTCGAAGTGCAGGGTGTTTAGCTGCGATTCGATCGACGAGTTGACGCGTCACGTGGACACCCATTACCAGAATTCCGCGACGAATTCTCACACTGTAAAAACGTACGGAGCTTATCAGTCTTACCAACAGGGAAATTCGGCGCAGACGGCCGCGCACAAGCCGTTGTACGCATGTAAGTATTGCATCAATTACAAGTCGGACAATCCAGCCCTGGTGCGCCGGCACGAGAAGAGTCACCTGTTGCATCGGCCGGAAGCACAGAGCGTTTATATGCAGCAACAGCGACAGCAGCACCTGCAGAAGAGCAAACACATGCCCGTGAGCCACGTGAACGACAGGCCGCGCGGCGGGGCTCAGAGCAAAACGGCCCCGAAAACATTTGTTTGTCGAATTTGCAATTTGTACAGTTTTCAGTCGAACGGGGAGTTGATGGAGCATCTGGAAACCGCTCACAAGACACCGTCTTCCAGCCAGGTCTGTTGCTACGTCTGCGATTACTGCACGACGCCGCTGATATTCGATTCGGAAGACGCATTGCGAAGTCACATGAATATCAGTCACAATTACTCGTGCGAGATCTGCTTGAGGAGGTACTCGTCGAGACACGACCTGCAGGTTCACCAATTGAGCCACGGACCTGTGGCGAAGAACGCGTAA
- Protein Sequence
- MSGEDPEIPTETEPSTSEALEPNVSGEEKNGENSAEQNSPKKKNTNTLFAEKMRMRKKEGDVTKPSEPGDTSTSHKALSTDTESVVKSSASKSINKVKSRIRRRNRQWSKGVLVKKKKSSNLLRNSLDGPLSTEIHEASKMQKPDVMPNGTIKSNKVKPQAKQEEAGGTSKQNVTAEDEQEEIPVRMTRRSRALPVKQENKVSEPEVSAPEVHDSGCRRTEPFVGKLKTKEDRKMALDNEFKISMMPINDANCYSGTASTSKTEAPSVKESVKKDVASTSKNRGSSSKRSAPTEKVSGEKKKVSQGKKEAPKQKKESLRERRSRNVNTPVPDSTKQKEKSEPLKELREDKETNADEAKSTSEGTTTEKRRKTVSKKNKAKEVEEAVCEDSGCRRTEPFVGKRVYQPTPVPESQKVEKLEPQENITSNISLNESKIDDSVSRKESDEIKDSDKSIKESENVKDSVETESTKETKCVEETTLKETECKKESEKETECLNESVPATDTITEATVEDSKEEMSALIVTANTSDSDWSCKRTEPFVGKVLRHGCSTEPEKVEVVLEEPGCSRTIPFVRPHLSAELNEKYEKQRESKATSDTEKIEPDLQESKKRPRTPTKDIDTGMPAPKKIKTKKKLNNSDCSKSEPSPASPKTPSKGTTICGMFSLNCTKHAHHHDQINGLNISSLKKLEVKLSKLEHSTDLEVMKWRSLRKQSKRRRHISTSSETPLKINENNVEAMEVDPPAINSVQPVVQSEDIPCVAPMESTLVELPTENIHETEVMKLQETPKRAPSKHRKSTLNLISKPDPPQDVQQSSEVRDLKVQLIRLETVQGSFDNDYSASEIESLTKKYMDFLMNSNFSCQALRRSVKDFQSSEESDDAYVEDTDSDNLVPRPRTNSQARDDLIAIERDALYTDNEANDYSDIKPLIIHASDVFAYDNGIIDLAAEEEAAEAVDAAKACANTGALNSGFDKATLDSDDVAAQNLRNQESRSKAAVQISDVLHSSANISNKSKIPTNDVSIDKSNVSSEELASNEDESLTELFSQAKRRRIHGINVIKCTKCDKIFVNEKVLQIHLLHVHKEPKLNVNGTSGTPKPKKQITLTRRKYTYNNSLQCNVCSAVHATKERLFEHLVTHTEQELQEAYKSATELKERKDSSVNETEKNSSSDQANADEEALVNNVETIINDSEVSTSEVEANAAQANDAQENADVEMNLQQNSENSQPPVRRQSTNVNTNVQEQIPKVGEFAQVLLKQNSEPVENHLPPSVNDRPDWQAVVQQAEIKQSDLVKPITVCPCHRNETAGLSTLDLQIEMVLLCKTCRVLFRRRDCFEIHYRSSEECQKGRSDYVNVRVPKLFCSSCRFVLNSLPEMRKHLEMHARQNSQGTVTFLCNICKVAFFGVGNIFYNHWFSHNKEPLFVASKYSFPKLSVVSVSDETSPSLCGSRNRDGFFYVAEHVCRTCRLPFASESDLRRHHLSPCHAIELNPDTRSILSTDKSSPVQYATGKVSMPANLVVSYLCDICKKFFESKALFDQHNLSMNHLKRTQPRCTVVGHGPATRYVCNVCKSAFKQVRGMKGHWEKHSPVVELYACDNCAVLPVGDSSQFTYDQFQKHCSCRHANDVRITCNVYFTMAKHVCGACKIGFETERSLKEHQLLHKGATPPQNLSIVQKGGATLTPIAPKESSATQHKHSNSATTTGSTVIWLTDNQTTADGGKQLYPLYVNVLDGKTSYGEKTRIETNRPNSAASNVLAGRSSGTPTLGHLKPIAIQGNQAILSETDSSVLRQMLNKERAEENAGQVDSDNPSETPMPKITNVETVIDLVDSRSNSPAENENNNSANEEGSTDPKDSAKTKYMTKVNPNFEKLLIAERSKAAIAKRAAEKKNSQNATKASTSPTKEPPRRSVEEVRKRIPSDVEVITIAEKKSTAQEKVKAAEGTPVSSPQPFEIVLVTEDIEMDNVNLDSGSTFVPRQGQKNYPRSALKLESNSELSVTTINNSSGKATNDSGTESSSKSFLRVRSVAELQKIQLHLCSFCGVSFDNWREFEIHSKVHSKVDKITNKTSDLRIVETESISRKEFAETPSSSVLPVQMISPMVTGQNSTPSGSTGKNKEQPYWFASCNSGETRNAELSQSESPGVSRTQEPPPSYSRTSGGLSRTGPPPNYPSGGAARTVAIHLPERNVNNALTKRPSGAATRIPQNHPKDPPPLAAYPGSEEMFGTNQTVRSSTSTEIAASGANQPKMYMCSKCRVFSCDSIDELTRHVDTHYQNSATNSHTVKTYGAYQSYQQGNSAQTAAHKPLYACKYCINYKSDNPALVRRHEKSHLLHRPEAQSVYMQQQRQQHLQKSKHMPVSHVNDRPRGGAQSKTAPKTFVCRICNLYSFQSNGELMEHLETAHKTPSSSQVCCYVCDYCTTPLIFDSEDALRSHMNISHNYSCEICLRRYSSRHDLQVHQLSHGPVAKNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -