Basic Information

Insect: Trichopria drosophilae
Gene Symbol: -
Assembly: GCA_030407085.1
Location: CM059584.1:93591555-93607594[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.4e-05 0.022 17.5 2.2 1 23 112 134 112 134 0.97

2 8 1.2e-05 0.0049 19.6 1.9 1 20 140 159 140 162 0.94

3 8 1.9e-05 0.008 18.9 0.7 1 23 168 190 168 190 0.98

4 8 4.8e-05 0.02 17.6 4.4 1 21 196 216 196 218 0.95

5 8 1.5e-05 0.0061 19.3 4.6 1 23 224 246 224 246 0.99

6 8 1.5e-05 0.0061 19.3 5.3 1 23 252 274 252 274 0.97

7 8 5.6e-06 0.0023 20.6 7.1 1 23 280 302 280 302 0.97

8 8 4.8 2e+03 1.9 0.1 1 12 308 319 308 321 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.4e-05	0.022	17.5	2.2	1	23	112	134	112	134	0.97
2	8	1.2e-05	0.0049	19.6	1.9	1	20	140	159	140	162	0.94
3	8	1.9e-05	0.008	18.9	0.7	1	23	168	190	168	190	0.98
4	8	4.8e-05	0.02	17.6	4.4	1	21	196	216	196	218	0.95
5	8	1.5e-05	0.0061	19.3	4.6	1	23	224	246	224	246	0.99
6	8	1.5e-05	0.0061	19.3	5.3	1	23	252	274	252	274	0.97
7	8	5.6e-06	0.0023	20.6	7.1	1	23	280	302	280	302	0.97
8	8	4.8	2e+03	1.9	0.1	1	12	308	319	308	321	0.83

Sequence Information

Coding Sequence: ATGAACATATCGAGACGTATGCGAAAACCCAATTTATTGGCAAACGGACGAAACCTTATCGAATACAACATTGGAAATCATTCAAGTAAAGAAGTGAACGTGGAGGATATTAACCATCTTCTGGCATATCATGAGGTATTTGGAAAGCTCCAAAGTGAAATAGCAGCAGGCACAACGTTAGTTAGTGGAACAATTCCTACGCAAACGGTgacaacaattcaaaatggttcgCCAATTGTTCAACAAGTgcagttaaataaatttgatataaaaagcAATGACGGAGAAGGCACATCTGGACCAAATGCAGCATCGCCTGTTTCTGCTGGTAGTCACTCTTGCGAGGTGTgtgggaaaatatttcaatttcgatATCAACTCATTGTCCATCGCAGATATCACACGGAAAGAAAACCATTTACTTGCCAGgTGTGTGGAAAAGCATTTTCAAATGCCAACGACTTAACACGTCATGGAAAGTGCCATCTTGGAGGATCGATGTTTACATGTGCAGTTTGTTTCCATGTATTTGCAAATGCACCATCTCTTGAACGTCATATGAAACGACATGCCACCGATAAGCCATATAATTGCACGGTTTGTGGAAAAAGTTTTGCTAGAAAAGAGCATCTCGACAACCATACTAGATGCCATACAGGTGAAACCCCATACAGGTGTCAATATTGCGCAAAAACTTTTACTCGTAAAGAACATATGGTTAATCACGTTCGCAAACATACTGGCGAAACGCCTCATCGCTGTGATATTTGCAAAAAGAGTTTCACTCGTAAGGAACACTTCATGAATCATGTAATGTGGCACACAGGAGAAACGCCCCATCATTGCCAAGTGTGCGGTAAAAAGTATACCCGAAAGGAACACTTAGCTAATCACATGCGATCTCACACTAACGACACGCCTTTCCGTTGTGAAATTTGTGAAAGCATTTTCCCCTCTGCCGGGCCCTCGAACGCCGTCCCCGGCTTTTTCACCCAACCTGTTGACCTGCCTAAACCTAGTAATATCCTCGGTGCACCATCACCTCCCACAGGAGATCTCGGTCCCTCTCTCGCCCCTCCAGTGACTTTCCCTACCGATTCCTCTCGCTCGCTTGACAGACAGCTGTTTACGTTCGGAATGATTAATCAAAGTGCAAAGAACACAAATATTGCTCCGAATAGCACAAATCATGTGTTACCACCTCTTGCAAGTTTGTCCCTGAATGCAACGAATGTCAGTTTGTCTGTGGCACCGATGTCGGCGGCCTGGGACTCTCTTGGTACGGATCAGCGTATGACTCTACTTATGCAGCAATCGCTCAACAAAGCCCCACGATTggattttatagtaaataatataagtaGCAACTCACTAGCCAAACAAGAAAATAAGCGCGAAATAAGTGATCTAAAGGGCCTGTGGTTTTATGGACAGCCAACTAAAGAATTCATTTTCACGGGTCTTCCGTCTTCGTGCGAGTTATCGATGGAGGATATTGTGAGTCCCTCTTCTCATCCCGTCTGTACTGATCCACAACTTCACCAGATTCTCCTGTTGCCACCACCTTCAAATTCACCAAGTTTCGCGTATCCGATAATTCGACCGGAGGAAGTCCAAAATATCATCTCTTTGTCTTTTTCTAAATCAAAGGGTCTCAGTCCGGATGGTATCCAGCTTATTCATCTTCAAAGGATTGTGTCCATTATCATTGAACCATTTACATCTTTGTTTAATATCTCTCTTGCTACGCGGGTCTACCCAGCTAcgtggaaaatatcatacattATCCCGCCGAAAAAGGTCACCAATCCAGCCACTCCTGGCGATACGCGTCCGATAGCGAACCCCGCACACATCGCTAAGCTGCTTGATGCTCTTGTCACTCGGATAATAGTTTCTTATCTTGAGTCCAATCACCTTCTCCATCCTAGAACAGTTTGGGTTTTGGAAGTGTCACAGCATCCACACGGCCCTCCTGAAGCTTACGGACGATATACGCCGCAGAATGGAGAAAGGGTTTACAACTATCTTGGTTATATTTGA
Protein Sequence: MNISRRMRKPNLLANGRNLIEYNIGNHSSKEVNVEDINHLLAYHEVFGKLQSEIAAGTTLVSGTIPTQTVTTIQNGSPIVQQVQLNKFDIKSNDGEGTSGPNAASPVSAGSHSCEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICESIFPSAGPSNAVPGFFTQPVDLPKPSNILGAPSPPTGDLGPSLAPPVTFPTDSSRSLDRQLFTFGMINQSAKNTNIAPNSTNHVLPPLASLSLNATNVSLSVAPMSAAWDSLGTDQRMTLLMQQSLNKAPRLDFIVNNISSNSLAKQENKREISDLKGLWFYGQPTKEFIFTGLPSSCELSMEDIVSPSSHPVCTDPQLHQILLLPPPSNSPSFAYPIIRPEEVQNIISLSFSKSKGLSPDGIQLIHLQRIVSIIIEPFTSLFNISLATRVYPATWKISYIIPPKKVTNPATPGDTRPIANPAHIAKLLDALVTRIIVSYLESNHLLHPRTVWVLEVSQHPHGPPEAYGRYTPQNGERVYNYLGYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -