Basic Information

Insect: Trichopria drosophilae
Gene Symbol: -
Assembly: GCA_030407085.1
Location: CM059583.1:203948372-203953985[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.8e-05 0.0073 19.0 2.0 2 23 451 473 450 473 0.94

2 7 1.5e-06 0.00062 22.4 0.6 1 23 484 506 484 506 0.98

3 7 5e-06 0.0021 20.7 0.4 1 23 511 533 511 533 0.97

4 7 0.0017 0.69 12.8 0.1 3 23 541 561 539 561 0.92

5 7 0.016 6.7 9.7 4.3 2 23 570 591 569 591 0.97

6 7 3.2e-07 0.00013 24.5 0.3 1 23 597 619 597 619 0.97

7 7 4.1e-06 0.0017 21.0 0.6 2 23 631 653 630 653 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.8e-05	0.0073	19.0	2.0	2	23	451	473	450	473	0.94
2	7	1.5e-06	0.00062	22.4	0.6	1	23	484	506	484	506	0.98
3	7	5e-06	0.0021	20.7	0.4	1	23	511	533	511	533	0.97
4	7	0.0017	0.69	12.8	0.1	3	23	541	561	539	561	0.92
5	7	0.016	6.7	9.7	4.3	2	23	570	591	569	591	0.97
6	7	3.2e-07	0.00013	24.5	0.3	1	23	597	619	597	619	0.97
7	7	4.1e-06	0.0017	21.0	0.6	2	23	631	653	630	653	0.95

Sequence Information

Coding Sequence: atggaggtcGACCAATCCGTGACCCTCATTCTCAATCACGCAGGCGAAGGTGAAGAAATTGTCTTTGAACCCGAAGAAGGTGTTGAAGGAAACGAAGACGGAGTAGAAGTAGTCGACATTATTGAAGAAATCGAAGAAATAACAGAAGAAATAGAAGAGATAGAAGAGGAAGAAGAAGAAATTCTAGATCCAGACGAAATTCAAAACGATGAcgaagaaattcaaaacgaCGATGAAGAAATCCAAAATATTGAACAAGAAATGGAAACCGAAGCACAAGAAGATCCAGATTTCGAAACTATCGAAATTACTGACGACGTCAGAGATAACGCACCATCTTCGAAACGTAACGGCTTACAAATAACTAGCGAcgttaacataaaatatttaccaaACAAAATTTACGGAAAAAATAGTCAAGCACCAAAACCCAAAGATGCTCCAGCTAATTCACTTGTAGAAGTACCGAGGAAATCTGCTGCTGGTGTTAAAAGTTCTGTTATTCGGGAAATCGTTCGATACGACGTTACCGAAGATTGGGAGGATGACGAGCCAACCGATGACAATCCCAAAGTATTGAATGATACTTCGATAGACTCGGTCGACAATCAGGTGTTCGAGGAGGTAAACGATAGCGAACTGACTTACGATCACAATGTCATCCACGAAGAAAGCGTCGAAGATTATAACCAaccagaaatcgttaaaaataccGAAAACAATTTAGTTTACACGGTGCTAGGACCTAAAAAACCTGCACAAGACAATAGTCGAAGAAAAGATGGCGAGTGCATTAAAtTGGAACAATATAACGAAGATGCCATACCAGCGGAAGAAGGTGCAATTTACTACGAAGGTGAAGAAATTGATGGAATGTACGTTTCGCACACTGTGGAAGAAGGCAGTCAAGAATTCAATTACGAATCGGAACAAATGCAAAACGAAGATTTGGAATGGGCGAATCAAAGCGAACCTGAACAACAAGAAGAAAATCCgGAGCAAATCTTTTTGCACGAAGATGAAGACGGACAATTGTATTTCAAAGATGAAAATGGCACCTTACAACCGGTTTACCTTACGTCAGATGGTAATTACGCCATCGCAGATAATAGCAGCGACGAACAAGACAGTCAAGAAGCCATACAAATTCAAAACGTACCATCCGAAGACCATTACGTCCTCCCTGATTTAGAATTGAAATCGGCTGTGTCGAAACagACAAGTTTACAGGCATTGGGTAATCAAGACGCAGATCAAGAAGACAATACTGTGACAATTTCTTTGATAATATCCGAAGACGAACATGGTCAAAAAAGAACACAAGTTATAATTCCAACAACCGATGAATTGAAGTGCGAAATATGCCagaaagtatttaaaacttCTTTCCAACTGTTGAAACACAATAGGTTAAAGCATGCTCGAGAAGAAGACATTACAACCAGAAGTTTCCCATGTGATTTATGTCCAAAAAgattctcGGATCAGAATTTGTTGGCTCGACATCGCAAATCCCATACTGGCGATCGCTTCCAGTGCCTCGAGTGTAGCAAAACTTTCCCTTCGTCTGCGACACTAAGACGTCATTTAGCTTTACATTCGGAAATGAAACCACTGCCCTGCATTTACTGCGGACGTCGATTTGTGGAAAAGGCCAGTTTGGCAAAACACGAACAGTCGCATTTGAATAATGCTACTCGAACTCTGACTTGCGACATATGCAGGAAGTGTTTCTTATCCGTCGCTGATTTGAATCATCACAAAAAGACACACGAACAAGAAAGGAAATACGATTGTGATATATGCGGCAGAGAATTTAATCGACTGAACAACTTGCAACGGCATCAATTAGTGCACCAACAGCAACAAGGAAATAACGAGGAGATTTTATCCTGCAACGTTTGTGGTATTACGTACAAATTTTCAAGTTCGTTAACTCGACACATGGTCACTACGCACATGAATCCTGAAAAACTTAAACAACAAGCCGAAGAACAAAGGAGGAAAAGGGAGAACAATTACAAAAGATATTTAGAGAATCGAAAAACGTACGAGCTACAAAACACAAAGCGCATGTGTCGCAGGAAGAGTGACGAGCAGGATGACGACGACTGA
Protein Sequence: MEVDQSVTLILNHAGEGEEIVFEPEEGVEGNEDGVEVVDIIEEIEEITEEIEEIEEEEEEILDPDEIQNDDEEIQNDDEEIQNIEQEMETEAQEDPDFETIEITDDVRDNAPSSKRNGLQITSDVNIKYLPNKIYGKNSQAPKPKDAPANSLVEVPRKSAAGVKSSVIREIVRYDVTEDWEDDEPTDDNPKVLNDTSIDSVDNQVFEEVNDSELTYDHNVIHEESVEDYNQPEIVKNTENNLVYTVLGPKKPAQDNSRRKDGECIKLEQYNEDAIPAEEGAIYYEGEEIDGMYVSHTVEEGSQEFNYESEQMQNEDLEWANQSEPEQQEENPEQIFLHEDEDGQLYFKDENGTLQPVYLTSDGNYAIADNSSDEQDSQEAIQIQNVPSEDHYVLPDLELKSAVSKQTSLQALGNQDADQEDNTVTISLIISEDEHGQKRTQVIIPTTDELKCEICQKVFKTSFQLLKHNRLKHAREEDITTRSFPCDLCPKRFSDQNLLARHRKSHTGDRFQCLECSKTFPSSATLRRHLALHSEMKPLPCIYCGRRFVEKASLAKHEQSHLNNATRTLTCDICRKCFLSVADLNHHKKTHEQERKYDCDICGREFNRLNNLQRHQLVHQQQQGNNEEILSCNVCGITYKFSSSLTRHMVTTHMNPEKLKQQAEEQRRKRENNYKRYLENRKTYELQNTKRMCRRKSDEQDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -