Tdro021754.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- gtf3a
- Assembly
- GCA_030407085.1
- Location
- CM059582.1:161782761-161792126[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0029 1.2 12.0 0.3 1 23 678 700 678 700 0.95 2 16 0.032 13 8.7 1.9 1 19 706 724 706 727 0.91 3 16 1.4 5.8e+02 3.6 0.7 2 23 733 754 732 754 0.95 4 16 9.1e-05 0.038 16.8 1.4 3 23 763 784 762 784 0.98 5 16 0.0028 1.2 12.1 2.1 1 23 791 814 791 814 0.95 6 16 8.9e-05 0.037 16.8 0.7 1 23 820 843 820 843 0.94 7 16 0.053 22 8.1 0.3 2 23 851 871 851 871 0.96 8 16 2.5e-07 0.0001 24.8 3.3 2 23 877 898 876 898 0.97 9 16 1.4e-05 0.0056 19.4 0.2 1 23 904 926 904 926 0.99 10 16 0.0013 0.53 13.2 3.2 2 23 938 960 937 960 0.95 11 16 0.024 9.9 9.1 2.3 1 23 966 989 966 989 0.95 12 16 0.0058 2.4 11.1 2.6 2 23 1010 1032 1009 1032 0.95 13 16 6.8e-05 0.028 17.2 1.5 2 23 1039 1061 1038 1061 0.97 14 16 4.2e-05 0.018 17.8 1.2 2 23 1069 1090 1068 1090 0.96 15 16 0.0011 0.47 13.3 2.3 1 23 1096 1119 1096 1119 0.96 16 16 0.009 3.7 10.5 2.6 1 23 1153 1175 1153 1175 0.98
Sequence Information
- Coding Sequence
- ATGGAGACAGACCAACCGTTAAAACAGAGTGAAGAACATTCAGACGTGGTCTCTGAAAAATCATCAACCCATAATAAAGACCACAATTACAGCGAAGCGACtggtttaaaaaagaaacgtaaATTGATACAAGATGCAAAACAAGGCGCTAATCAGAAGGTTGTATCGAAACAAAATTCACCATctggaaaagaaaaagaaggtCAGCTGATTAAAAacatcagcgaccttaaaaaagCGACTCCTTACGTAAAACTTCCTTCGTTATTGTCTCCACCGAtgccaaaaaaaagttttacaaccATTGAAGGCATTAAAGAAGACCTGCGTAAATATTGTCGCACTTGTGCAGGTTTGAAGATGCCGTTGGTTGATATTTTTGGCGAGAAGGGGATTCAAATGAGACTGAATCAACAAATGCgacatttagaaaatattgacaaaaataccAGTTTATCCACCCAACTCTGTATGGATTGCATATGCGACTTGAAAATGagttataaatttttcatgCAGATTAAAAAAGCCGAAGTTAAGTTGAAATCTATTTATTCTTCGCTTAGCGAATCACTTCCGAAAACCGTTCCTGAAGAGGAAACTGATCTTTCAAAAAGTCCAAGCGTCAAAGAAGTAAACGATCAGGACTCGGAAATTAAAATAGATGAATATCAATGTCATCTTCCGCAATTTCCAAATGATGAACCAAATGCCGACACTACTAAAGATATTATAACTGATTATCAAACTCTTTTAAAGTCAGAATCTAGCGATTTCGAGTACTCTACAAGCGTAATGTTGGAACAACAAGATGAAAATGAATCGATTGAAGAATTCGATCCGGATGACATGTTAGATCACGATATATCCGAATGTGGTATAAGCGAATTTGATACCGAATGTCCAGAAAATACAAGTGTGGAAATTTCATCTAATGAACCCATTAATTCGGAAATATTAGAGAATGACTCGCAGGAAAACATTGACGGTAATAATTTGGACCATTTAGCTTACAGGTTCGACAAATCTCTTAACGCATACATAAAAGTTGGTTCAAGCACCGAAGATAATTGCGAAAATACAGTTACAGATGTGTCCAAAATCGAAACTACAAATTCCAGCGAACAAGATAATCAAGTAAAACAGCCtaatattttgaaacgaaaGCTTTCTACCGATTCGAAAAAAGATGGAAGTATTGAAAATGCAGTCGCTAAATTagactttcaaaaaataaataaaattcctaaATTAAATGTTCATGATACAGTAAACATAAAGACTGAGGAAGAAGGTGTAATGTATGTCACAGTCAAGGGAAATACACCCAACGAACTGTtacttgtaaaaataaaaaagatggatAAACCTGGAGAGAAGGTGTCGAATAAGAAAAAACCAGATAGTTCCAGCAAGTCAAAAGATGACGCAACAGAAAAATCTAAAACAGATCCTAAAGATAGTTATATCGACGAACAAATCGAAGAATACAAGAAAAAACGTGAAAAGATTTTAGGCGAACAATTAAATTTggcaaatattctaaaaatggaAGATGTTGAAGGCGATAAAGAATATAGTATTATAAATTATCAAGATCAACAAAGAATGTTAGGGGATTTAAGTGAAatggaaatgaaacaaaaatttaaagaaaatatcgacGTTGAAGAGGAAATGGAAAATTCAGTTGAATGCGACGAAAGGTTTATGACCTCTAAAAGTTCGGCACGTCTCGATAAACTTCGACAAAGATGGGCAGAAGTTAAGAAGAAGCACGACATTATGACGAAGGATTTAGCACAGACAGACTCTATTGATAGATTACGAGTTGTTTTAGGTGAAGAACACGAAGACAAATTACAAGAATTTctcgaatatttaaaatctcgAAGAATTATAGTTTCTCGATTAAAAGATGAAGACATCATaagtttatttgaaacaaagaaTAATATAAGTCTCAGGAAAAATGTAGTAGAAATTGAGGAACCAGAGATTCCAGAGGATCCGTTTCTAGAAAAAGAAACGTTCGATTGCGATTGGTGTTTTGAAcaatttactaataaagaatTGTTAGAAGAACACGAAAAGGGTCATGACGTTAAATTGTTGCATCATTGCGAGGACTGCGAcgaaaaatttacaacaaataaagCCAAAAGAAATCATAATATTAGTTGTATTAAAAAGCTAATATGCAAATATTGTAACATAATTTTAGATTCTAGAGGCAAAAAAAGACAGCACGAACAAAAGCATTGCGACGATCTTTTCGGACAGCTTTGCGACGTATGTGGTGAAAAATTCAAGCATCAAGGTACACTAGATCAACATATAAAGACCAGGCATAtggatttagaaaaaatttttcagtgtccaaaatgtccaaaaaaatttgcgtttaaaactaaattaagttttcatttaaaatctgTTCACACTTCGATGCGAGCTTATTTATGTGAGGATTGCGGcgctgattttaaaaatcctgcCAGTTTAAGGCATCATAGAATACGCAAACATCAACCAATTAGTAATAAACGTGAATGTCCCGTTTGTAATAAAGCTGTTCCTGTATATAGCTTATCGAAACATATGCACACGCATAAAGCTTACACGATCAAGTGTCCGCACTGcgacaaaatgtttaaaaatagttcaACTCTTAAACAACACACGAGAATTCACGAAGACCAAAGGCAATATAGGTGCGACATGTGTGGGGTTGGATTCAATCGGCGTGATGGTTTAAGACTGCATTTGAAAGTACACGAAAAATCTGATAGTAGGGGCTTGAAGGAATGCTCGTGTCAAGTTTGCGGAGAGAAATTTCCGAATCACTCGATGCTTGTAATTCATCGAAATCGTAAACACAAAGATGGGAGACATTATACTTGTCACATATGCAATAGATCGATGATTTCGACTCGATCCTTAGAATGGCATTTATCACATATTCATAACGAAAGCATGCCTGGTTCGGCAAAAAGTGATACAGATACGTCAGATCTGAAACGAGTGTCGTGTTATCATTGCGATAAGACGTTCAAGACCGAAATGATCCTTAGAACTCATATTAAGAACACCCATGTTGAAAAAGATCCAATGAAATGTTTAGACTGCGACGAAACATTTACTTCTGAAGTTAGACTGAGGCATCACATGATGACGTTACATAATCGGCTTGAAGGTACTTTGGAGTGTCCGCATTGTCCAAAGCGATTTGTGAATTCTTTAAGATTAAAGACACACATGATATCCCACTCTGAAGACAGACCGTATACGTGCGAAATTTGTGGtttcaatttgaaaacaaaGATTCAGTTGATCAAGCATCATCAAAATCGTCATAGCGATGAAAGACCGCTTCAATGCAGATTTTGCGTTTGGAGGTGCAAACAAGTGAGTGCCCTAGTCTGCCATGAAAGGACGCATACAAACGAAAGGCCTTACTCGTGCAGCGTTTGTCGACAGAGATTCAAATATCTCGGTGATAAGAATAAACACGAGAGACGTCACGAGAGTCTTGGAGGTTCAGGATTCAAGAGAATCGTAGCAGGCAGGAACacgaaagctaaaaaaattaaacacgaATCAAGTGGGTCAGAAGCTGAGCAGGAGGAGTATGAAGCTGATGGATCTTACGAAGAACAGTACCAAGAAGGAGATGAGgcatatgaagaaaaatatactgAGAAGTATGAAGAAAATGATGATAAATACCATGCTAATGAAATTGTGAAGTTTGAAGAACCAGTGGAGGAGGAAACGTATGAAACAACATATGAACAGGCATACGAAGAAACTTCGCAAGATGTACCAGATGGTGCGCAAGTAATAATGACCATGGAAGACACAACAGTGTATACAGAGGAAGTAACGGCTGACACTGCTGACTCAACCGAAATAATAACGGATGAATTAATCGAAAATCAGATTTTGCAACCTGGGACAGTTGTTCATCTCCAGCAGCAAGACGAGACTGGAAACATTCAGGTTATTCCTGTAATGCTTTCTTTACCAGATTTATCAGATGGAAACGCAGAGGTCAATTTAGCTACTGCATCCATAATGTACAATAATTGA
- Protein Sequence
- METDQPLKQSEEHSDVVSEKSSTHNKDHNYSEATGLKKKRKLIQDAKQGANQKVVSKQNSPSGKEKEGQLIKNISDLKKATPYVKLPSLLSPPMPKKSFTTIEGIKEDLRKYCRTCAGLKMPLVDIFGEKGIQMRLNQQMRHLENIDKNTSLSTQLCMDCICDLKMSYKFFMQIKKAEVKLKSIYSSLSESLPKTVPEEETDLSKSPSVKEVNDQDSEIKIDEYQCHLPQFPNDEPNADTTKDIITDYQTLLKSESSDFEYSTSVMLEQQDENESIEEFDPDDMLDHDISECGISEFDTECPENTSVEISSNEPINSEILENDSQENIDGNNLDHLAYRFDKSLNAYIKVGSSTEDNCENTVTDVSKIETTNSSEQDNQVKQPNILKRKLSTDSKKDGSIENAVAKLDFQKINKIPKLNVHDTVNIKTEEEGVMYVTVKGNTPNELLLVKIKKMDKPGEKVSNKKKPDSSSKSKDDATEKSKTDPKDSYIDEQIEEYKKKREKILGEQLNLANILKMEDVEGDKEYSIINYQDQQRMLGDLSEMEMKQKFKENIDVEEEMENSVECDERFMTSKSSARLDKLRQRWAEVKKKHDIMTKDLAQTDSIDRLRVVLGEEHEDKLQEFLEYLKSRRIIVSRLKDEDIISLFETKNNISLRKNVVEIEEPEIPEDPFLEKETFDCDWCFEQFTNKELLEEHEKGHDVKLLHHCEDCDEKFTTNKAKRNHNISCIKKLICKYCNIILDSRGKKRQHEQKHCDDLFGQLCDVCGEKFKHQGTLDQHIKTRHMDLEKIFQCPKCPKKFAFKTKLSFHLKSVHTSMRAYLCEDCGADFKNPASLRHHRIRKHQPISNKRECPVCNKAVPVYSLSKHMHTHKAYTIKCPHCDKMFKNSSTLKQHTRIHEDQRQYRCDMCGVGFNRRDGLRLHLKVHEKSDSRGLKECSCQVCGEKFPNHSMLVIHRNRKHKDGRHYTCHICNRSMISTRSLEWHLSHIHNESMPGSAKSDTDTSDLKRVSCYHCDKTFKTEMILRTHIKNTHVEKDPMKCLDCDETFTSEVRLRHHMMTLHNRLEGTLECPHCPKRFVNSLRLKTHMISHSEDRPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRFCVWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVAGRNTKAKKIKHESSGSEAEQEEYEADGSYEEQYQEGDEAYEEKYTEKYEENDDKYHANEIVKFEEPVEEETYETTYEQAYEETSQDVPDGAQVIMTMEDTTVYTEEVTADTADSTEIITDELIENQILQPGTVVHLQQQDETGNIQVIPVMLSLPDLSDGNAEVNLATASIMYNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -