Tdro066769.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- salm
- Assembly
- GCA_030407085.1
- Location
- CM059585.1:70284318-70294189[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.4e-05 0.0058 19.3 0.9 1 23 384 406 384 406 0.98 2 9 9.6e-06 0.004 19.8 2.1 1 23 412 434 412 434 0.98 3 9 0.56 2.3e+02 4.8 1.8 3 23 798 818 797 818 0.92 4 9 1.9e-08 7.8e-06 28.4 1.0 1 23 824 846 824 846 0.98 5 9 0.00011 0.046 16.5 3.6 1 23 856 878 856 878 0.98 6 9 0.002 0.83 12.5 1.9 2 23 1190 1211 1189 1211 0.97 7 9 0.035 14 8.6 0.9 1 13 1217 1229 1217 1231 0.92 8 9 1.3e-06 0.00055 22.5 4.0 3 23 1422 1442 1420 1442 0.96 9 9 8.3e-07 0.00034 23.2 0.7 1 23 1448 1470 1448 1470 0.97
Sequence Information
- Coding Sequence
- ATGCAGTTGATGCGCTGGAGCATCACACGGCCATTGGAAAGCCGCGAAAAGCACAAAACTGAAACCAGGATCTGTCATTCAGGCTCTGCCCAGCTACGTCTTTCCTATTCACGTTATTCTGGAGAAGAAAACGAATCAGCTTCAGACGAAGAAAGCGCCTGTGGGACTATCGGCAATGAAGCTGTCGATCTTACAGCTGCTCGTTCTCACCATGGAGATGAGGACGAGAAAGAACCCGACGATCTTCCGGCGGATGACGAGGAAGACGAAGGAGGCGATGAACAAGATCCTGAAGAAGATGAAGAAGGTTcgcgaaaaagtatacgaaatcgCCAAGATGcagaaaataataacagtttCATCGAGGGCACGCAATCGGCTACAGCAGTCTTCCCACCGGCTGGCACTAGTCACGTCACTCTTGAAGCACTGCAAAATACAAAAGTGGCGGTTGCTCAGATTGCTTCTACGGCATTGGCAGGCGGGGCGGACAGCGAGGCAGCACTACAAGATATCGCAGTCATTCAAAATACCCTTTGTTCGCTGAAACATCAGCATGCATTCCACCTGCAGTGGATTTCACAATTACAGCAGCAGTTGTCGATAACGCAGCTAGGATCAACTCCGCAAAGTGCAGGAGATGCTGCTCCACCAAATAGTAAAGAAGCATCGCCGTCGCCTGTGATGCAGCCAAAACTGTTAGCATCGTTAACGTCTCCACCCATTTCGCGCCCCCCGAGTCACCAACAATCTTCTCCGTTATCCGTTGCAACGGGACCCATACAAGATCTTCCGACTACGCCTGGGAATATTTCTCCTTTGAATCAATCAACACCATCAACGGCCGCGCCTTCCCCGCCCGCTACAACGTCTAGTAGTCAGGTGGCATTATCACACCAAATGCCTGCATTGTGCTCAATAAGTTCATCACTTGCTTCATCCATTATCACAAATAATGACCCTATGCCACTTCACGAGCCAAATACTTTAGAAATGCTGCAAAAGCGTGCTCAAGAAGTTTTGGATAATGCGAGTCAGGGTCTTCTAGCCAATAATTTGGCAGACGAACTCGCTTTTCGAAGTGGAAAAGGCTCACGTCTTTCGCCTTACGACTCAAAATCGGGTAACGGACGAATTGACACCTTCAAGCACCGTTGTCGATATTGTGGCAAAATTTTTGGTAGCGACTCTGCTCTTCAAATTCACATAAGATCACATACAGGTGAGCGTCCTTTTAAATGCAACGTCTGTGGCAGTCGATTCACTACTAAAGGCAATCTCAAGGTCCACTTTCAAAGACACCGAGACAAATTTCCACATGTTAAAATGAATCCAAATCCCGTTCCTGAACATCTTGATAAGTACCACCCTCATTTACTTCAACAACTTGCAGCCTGTGGACAAAGACCTTTATCTTCTCCACCACCGCCGCAACCACCTCATCATCCGCCATTTCATTCTCCGGTATCGGCGGCCACTCGTGGCTTCCTTCCTCCTCAGCCCCCATTGCCGCTTAGCTTAAACTTACCGGGTTTGCCATCTCTTTATCGGTCTCCTCTTGTCAATCACCGTGATGATGAAGATATGCCGGAAAATCTTAGTAAACCTCTCACAATGGCTCCTGAAACATCGCCTCAATCAGTCGAGGTGCAATCTAATTCACACAATTGCTATAATGAGCAGTCACAAAAAATACAACAGGACCAGAGAGAAGAAATGAAAGAAGAGCAGCGATCACCGATACCAGATTTTTCACATAGATCTGCAAGTAGTGAAATAGGTGATAGAATCACTCCAAAACGAGAGCCAGATGAATCCGAGGAACTTGCCGATGAAGACTGCGAAGAGTTCGATGAAACGTCACGAAGGTATATGAATTCCTCACCGCTGTCTATAAATGCAGCATCACAGCCTCAAATATATGAAGACTGTAGTATGGATAGTAAAATTAGTGGACGGCTAGAAGCTGACGTTGAAACCGAAAATGATGAAGACATGGAGGAACAGCCAGAAAATCTGTCCGGTAGAGGACTTTCTAATCAACTGCCACAACAATCCACAATTTATCCTGGAGCTTCGCCAGCTAGTAGTAGCGCTAGCAGTGGTAGCTTGCAGAATTCATTTGCAAATATACTTTTTCCTGGATTCCCATCTCATCCTCAAATAGCTCACCATCCATCATCTTCAACTGGCACGACATGTTCCGGAACGGCACCCGAGATGGTTATCGACCCCGCTAGAGACCCCGCGATTTATTCTAATCTCTTACCAAGGCCTGGTAGTAACGATAACTCTTGGGAAAGTCTCATAGAAATTACAAAGACTTCCGAGACGTCCAAATTGCAACAACTCGTTGATAATATTGAGCACAAACTTACCGATCCTAATCAATGTATTATTTGTCAACGGGTATTGTCGTGTAAAAGTGCTTTGCAGATGCATTACAGGACACATACAGGTGAGCGACCTTTCAAATGTAAAATCTGTGGTCGAGCCTTTACGACTAAAGGTAATCTCAAAACTCATATGAGCGTACATCGCGCTAAACCGCCATTACGAGTACTTCATCAATGTCCTGTATGTCACAAAAAGTTCAGTGATGCATTTGTTTTGCAACAACATACAAGGCTTCATAAAGGTGAACCTACAGATCTCAGTCCTGAACAAATTCAAGCAGCGGAAGTAAACGATTTCTCGCCTGTATATCACCCCCACCACCCACTCGCTCCTTTTTTACCACAAGCTTTTCCAGCCCTGCATCCGGTCTCTGGACTTCCTCTTGGGTACCCACCCTCTGCTAGAGCGCAACCTTTAGATCTTCATTCTCGTGAAACTGACGTAGACTCTAAGGAATCTGAACAGCAGAAGCAGTTGCAACTTCATCTTCAACAAAGGTTTATGGAGGAGCATTGTGAAGAAATGGATGACGGAgaggatgatgatgaagatCGTAGAGAAGATGATGAGAGGAGCGAAGAAAATCGAGAGAATAGACTTGCCGATGGCGAAGAAGATAAAGATTTAGACAATGAAGAGCACGAAAGAAAAGCTGACTTTAATTCTATAATACCTTCGCCAATCATTTCATCGCCTGCTATACCATCGTTTTCTACATCATTAGCAGCACTGGAAAGTCAAGTTCGAACAATAACGACAATGGCAACAAATATGGTAATTCCTACGAAATCTCCGCCACCTAACCGATATAATGGCAGTGAAAAGAGCAGCAGTCCACCGAGTAGCGGTGCGCCGCTTGATCTCACTCCCAGAGCTTCATCTACTCCTGCATCAGTTACATCGGCACCCACGTCACCACCGTCGCAAAACTCAGTACATCATCATCCATTTGGAGTATTTGCAGGGCTGTTGCAGGCTGTTTCATCCCCATCGGCGTCAAACAGTATTGGAACCAATATCAATAGTATTGCGAATATGAATGTAGTGAGCTCGGGAAGTGGAGCGGCTGGTCCACTCGCATCGCTAACAACTTCTGCTGTTCGAGCTGCCACTTCAACTTACAATCCGCTCGGCCTTGCAGTTAGTGGATCAGCAGTAAGAGGTAACACCACTTGCAACATCTGCTACAAAACGTTCGCATGTAACTCAGCTTTAGAGATACATTACCGGAGCCATACTAAGGAACGTCCTTTTAAATGCACCATTTGTGATCGAGGATTTTCCACAAAGAATGGAGAGACGTGGAGCAAAACTTGTGATTGCGCCAATCGAACTGGAAGTACCCGAGAAAGGCCGAAAAGCACACGACGACGGCCTGAGGATCGTAAAAGCCGAGGGCGGACTGGGCCCGAGGCGGGGCGGGGACTGGCGTCCTCCTATGCTGCAATCTATGGAGACGCACGCCTGCCTCCGCTGATGCCATCCGCCCTCGGATTGCTCGCATCCGAGTCCGTCTTCCTGGGGAATATGAAACAGCACATGTTGACGCACAAAATTCGGGACATGCCACCCCACCTGTTTAGTGACACGAAGCAACCAGTTCAGCAGCAGCAACAGCTGCCACCCTCGAACCAACAGCAGCAGCAGTCACCGCAACCAGCTCATCAACAACAGCAGCATGGACACGACAGCGAGAGATCTCGAAGTCCCCTATGTTCAGACGAGTCTAGTCTGCCGCCACCACCGCTTCCCCCAGCGCAGATCCTGTCCCCGTCAATCGAAACAAATCTACCTGGCAAAAGAGCGCTACCAGAAACCGATCTCCCCGCACCAAAGAGACCACCCAGCATGTCCAGCAAGCATTTGTGCCATGTTTGCAATAAGAATTTCTCCTCGTCTTCGGCGCTCCAGATCCACATGAGAACACATACTGGAGACAAACCGTTCCGGTGCACCATCTGCCAGAAGGCCTTCACCACCAAGGGCAATCTTAAGgTACATTGGGGGACTCATATGTCGATCAACGGAACGTCTCGGCGAGGACGTCGAATGTCACTGGATATTCCATCTCTTCAAATCACTCCCAAGGACTCAGAGTTTCTCCAACGACGTCCGGATCTCTTTTATCCATACCTACCCGCGCCGTTCCTTAATGGAGTACCTCAAAAATTGAACGAGATTTCCGTGATTCAGAGTAATAACGGTCTACCGGTACATCCTGTCAGCGCGGGAAAGTATGCTGGATTGTTTGGTTCTGTATATGCTACCGGTGGATTCTCCCTGGAGAAGCAGCCTATGGCGCCGTGCAACGGGCCACTTGGTGACGGTCCCAAGTCGGTTCAACCCGTCGGCTCGCTTTTATACCAGACACCGTCTCCGTCTCACTCCCCGGGAACACCATCTTCGAACACAGGAAATCAAAATTCAGCTACCATGCCTCCATGGAGCGGCGAATCTTTGCAGCATCATTTCGAACGAGAGGTTCCCTCCAGATCGGATAGTGATACCGCTCATCCCGCACCACGACTACCGCCGCCGACGCCTAGAGGTGAGGGGCTCGCGGCGTGA
- Protein Sequence
- MQLMRWSITRPLESREKHKTETRICHSGSAQLRLSYSRYSGEENESASDEESACGTIGNEAVDLTAARSHHGDEDEKEPDDLPADDEEDEGGDEQDPEEDEEGSRKSIRNRQDAENNNSFIEGTQSATAVFPPAGTSHVTLEALQNTKVAVAQIASTALAGGADSEAALQDIAVIQNTLCSLKHQHAFHLQWISQLQQQLSITQLGSTPQSAGDAAPPNSKEASPSPVMQPKLLASLTSPPISRPPSHQQSSPLSVATGPIQDLPTTPGNISPLNQSTPSTAAPSPPATTSSSQVALSHQMPALCSISSSLASSIITNNDPMPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRSGKGSRLSPYDSKSGNGRIDTFKHRCRYCGKIFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHRDKFPHVKMNPNPVPEHLDKYHPHLLQQLAACGQRPLSSPPPPQPPHHPPFHSPVSAATRGFLPPQPPLPLSLNLPGLPSLYRSPLVNHRDDEDMPENLSKPLTMAPETSPQSVEVQSNSHNCYNEQSQKIQQDQREEMKEEQRSPIPDFSHRSASSEIGDRITPKREPDESEELADEDCEEFDETSRRYMNSSPLSINAASQPQIYEDCSMDSKISGRLEADVETENDEDMEEQPENLSGRGLSNQLPQQSTIYPGASPASSSASSGSLQNSFANILFPGFPSHPQIAHHPSSSTGTTCSGTAPEMVIDPARDPAIYSNLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCIICQRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMSVHRAKPPLRVLHQCPVCHKKFSDAFVLQQHTRLHKGEPTDLSPEQIQAAEVNDFSPVYHPHHPLAPFLPQAFPALHPVSGLPLGYPPSARAQPLDLHSRETDVDSKESEQQKQLQLHLQQRFMEEHCEEMDDGEDDDEDRREDDERSEENRENRLADGEEDKDLDNEEHERKADFNSIIPSPIISSPAIPSFSTSLAALESQVRTITTMATNMVIPTKSPPPNRYNGSEKSSSPPSSGAPLDLTPRASSTPASVTSAPTSPPSQNSVHHHPFGVFAGLLQAVSSPSASNSIGTNINSIANMNVVSSGSGAAGPLASLTTSAVRAATSTYNPLGLAVSGSAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKNGETWSKTCDCANRTGSTRERPKSTRRRPEDRKSRGRTGPEAGRGLASSYAAIYGDARLPPLMPSALGLLASESVFLGNMKQHMLTHKIRDMPPHLFSDTKQPVQQQQQLPPSNQQQQQSPQPAHQQQQHGHDSERSRSPLCSDESSLPPPPLPPAQILSPSIETNLPGKRALPETDLPAPKRPPSMSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTICQKAFTTKGNLKVHWGTHMSINGTSRRGRRMSLDIPSLQITPKDSEFLQRRPDLFYPYLPAPFLNGVPQKLNEISVIQSNNGLPVHPVSAGKYAGLFGSVYATGGFSLEKQPMAPCNGPLGDGPKSVQPVGSLLYQTPSPSHSPGTPSSNTGNQNSATMPPWSGESLQHHFEREVPSRSDSDTAHPAPRLPPPTPRGEGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01489601;
- 90% Identity
- -
- 80% Identity
- -