Tdro058554.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059585.1:23710260-23712878[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00049 0.2 14.5 2.4 1 20 139 158 139 161 0.96 2 13 0.0056 2.3 11.1 2.7 1 23 167 190 167 190 0.92 3 13 3.1e-06 0.0013 21.4 1.0 1 23 196 218 196 218 0.98 4 13 3.6e-06 0.0015 21.2 1.0 1 23 342 364 342 364 0.98 5 13 0.00028 0.11 15.2 0.3 2 22 377 397 376 397 0.93 6 13 0.0003 0.13 15.1 3.4 1 20 415 434 415 437 0.93 7 13 0.0035 1.5 11.8 0.3 2 23 443 465 443 465 0.95 8 13 7.2e-07 0.0003 23.4 0.3 1 23 471 493 471 493 0.99 9 13 0.002 0.85 12.5 6.3 1 23 500 522 500 522 0.98 10 13 0.00027 0.11 15.3 0.3 3 23 530 550 528 550 0.97 11 13 0.00068 0.28 14.0 0.3 1 23 556 579 556 579 0.95 12 13 1 4.3e+02 4.0 0.1 1 23 593 615 593 615 0.89 13 13 0.084 35 7.4 0.0 2 23 850 871 849 871 0.96
Sequence Information
- Coding Sequence
- ATGGAAACCGAAGAAAATGAACAATTCGTGGATTTTTCCATCAACGCTGTTCCAGACGAACTACGCGATCAAGTAGTTTCCAGAGAAGAAATTTGTGAACCCGTCGAAGAATGCGTCCTTCAAGAAGAACTGGCAGAAGTAACAGTCGATCATGACGTTGAAACCCAAGTCGCAGTTCTCGAGCGTTCTGACGGAGAAGAAGAAAATTCCGTCATTTACCCAATTTACATCAAGGAAGAAGAACACCAACAATACACCTCCGGCGATGACGAATCCATGGCAGTCGAAGCACTTCGTCAACTCGGTGGCATGTATCCATCCTACGAGAATAAAAAGATACCTTGCGAAAACTGTTCCAACTTATTCACTCAAGCGGAATTCGACACACACAAACTCGATTGTCAACCTGAAAAGTTTTCTTGTACCGTTTGCAAAGAAAAGTTCGAAAGAAAAGTAGATTTGAACAATCACATGGTTTGTCATCAAGTGGATCGTCCGCATTCCTGTCGAACTTGTGGAAATCTATTCAAATCCAAAGCTAACCTGCACACTCACATGGTTGAAGTCCACCACGTCGATAAACCTCACAAGTGCACCATTTGCGGGGTTGATTTCCAAAGACCGTCCAGTCTTTCCAATCACATGAAAATCCACACTTACGTCGCAGGCAGAGCCTTGATGCAAACGAACGAATCTTTCCCTCCCGAATCCGTCGTAGCGTCGACTTCTGCGCAAACAGTTCATAACTTCGAGCTTCCTCAAGTCCAATGGGCTGTGCAAACGTACAACTTCCAAGCCGACAGTACCAGCGGAATAAATCAAACCGAAAAAATCGATACACTCCAAGAATTTACAGTAATGCCAAACGGTGAAGTAGCGCAATTCGAATATGCGAATCAAACCAACAGTCAACAATACAGCCTAACCTTAAATTCCTTTGGTAATTCTGACACATTAGTAAAAGTCGAAGCTCCGTTCGACGATCGAAGATTCGTCGAAGTTGACATAGAAGAAAGTCGAGTACACACATGCGGCCAGTGCGGAATAACCTTCGCTCGTTCCTCAGCGCTAACGACACACGAAAAGACTCACTTGCCGCAGTTAACAAAGACGTGGACTGCTCCAATCGAGTGCGAGTACTGCGACAAGCAGTTTCAAGATGCGAATCATTTATCGACTCATCAAATAACATGCGCGAAGAAAATCATGCAAAATAACGAAGGTACAAACAAATGGGGGAAACATTCGTGTAAAGAATGCGGCAAGAATTTTActaccaaacaaaaaatgtttcgacatCAATGGATTCACCGGAAGAAAACTCGTTCATGCGAGGTCTGCGGTACACAGTTTGAAAAACAAACTCAACTGGACGAACATCGATTGTCCGCTCATCCGGGAGATTCTCCTTACACCTGCAACGAATGCGGCAAAAGTTTTGTGTCGAGACAAGGACTCTGGGAACACGGCAGAACCCACGCGGGTAGTCCGGCACACTTCCACTGCGACACTTGTTCGAAAACTTTTTCATCGAGGCAAGGATACTTGATCCATCATCGAACACACACCGGAGAACGACCGTACGGGTGTCGATACTGTTGGAAAGCATTTCGGGACGGCGGAACGTTACGAAAACACGAAAGAATTCACACTGGAGAACGTCCGCACATTTGTCCGTTGTGTTCGAGAGCATTCAACCAAAAAGTTGTGCTGCGAGAACACGTGCGTTGGGTACACGCAGCAGGGAAGAACGAAACGGAAGCGACAGGTCCGCCTTACCCATGTCCGCTATGCGGCGCACTGAATCAGGATCGTGACGAACTGTGCGCACACATTGTGCAACATTCGGATCAAATTATCGCAGCTGCTAAGGCAAAGACGAATGCGTTAATTCCAAAGAAGCCGCAGAAGAAGAAGAAAGCACAAggaaaaacgaaaactaaagcGGAAAAGGAACCGAACGATGCGGTCATTTCAATCGCGACTGATGGATCTATTAACGAACAGCCGATGACCATAACTCAAAATAATACTCTGTTGATAGTAACGAGTAAACCAAACGAGTCTATGTGCATCGTTTCGggtgaaaaattaagtaacattaaAGACGATCCAGATAGTAATCATAACGAATCGATTAATTTAATAGCAATCGAAAAAGACTCAACCGAACTCGTTTCTTCGCAAGAAACAGTTTTAAGTAATCACAATTTATTAGCGTCTAATACAATgcatttaattccgtttacaaaaTCTGGAGAAACGGTTCATCTTAttgcaaataaacaaaataatactttacatttaatatcgaaacaaaatgaaaatttaccgGTGTTGGCGCTTCCAAATCCGGAAAGCGAAGAAAACTTTTCCGATCAAATGCAAATGAATGATGCATCgatgaatatttgtaataatgacGAGAATTCCAAAGAAAAGATTTCTTCGAACACTATTTATGTAGATAGCGAAACTTTGAAATCTGCAATAATTCAAGTTCAATATCAAGAAGAGATTGAAGAAAGTGACGAAAGCGAAGAATTGGTTTGCGGAATTTGTGGGGATGATTTTGACGATAAGAATGTTCTAATGGAACATGTGAAGGtacatatttag
- Protein Sequence
- METEENEQFVDFSINAVPDELRDQVVSREEICEPVEECVLQEELAEVTVDHDVETQVAVLERSDGEEENSVIYPIYIKEEEHQQYTSGDDESMAVEALRQLGGMYPSYENKKIPCENCSNLFTQAEFDTHKLDCQPEKFSCTVCKEKFERKVDLNNHMVCHQVDRPHSCRTCGNLFKSKANLHTHMVEVHHVDKPHKCTICGVDFQRPSSLSNHMKIHTYVAGRALMQTNESFPPESVVASTSAQTVHNFELPQVQWAVQTYNFQADSTSGINQTEKIDTLQEFTVMPNGEVAQFEYANQTNSQQYSLTLNSFGNSDTLVKVEAPFDDRRFVEVDIEESRVHTCGQCGITFARSSALTTHEKTHLPQLTKTWTAPIECEYCDKQFQDANHLSTHQITCAKKIMQNNEGTNKWGKHSCKECGKNFTTKQKMFRHQWIHRKKTRSCEVCGTQFEKQTQLDEHRLSAHPGDSPYTCNECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCRYCWKAFRDGGTLRKHERIHTGERPHICPLCSRAFNQKVVLREHVRWVHAAGKNETEATGPPYPCPLCGALNQDRDELCAHIVQHSDQIIAAAKAKTNALIPKKPQKKKKAQGKTKTKAEKEPNDAVISIATDGSINEQPMTITQNNTLLIVTSKPNESMCIVSGEKLSNIKDDPDSNHNESINLIAIEKDSTELVSSQETVLSNHNLLASNTMHLIPFTKSGETVHLIANKQNNTLHLISKQNENLPVLALPNPESEENFSDQMQMNDASMNICNNDENSKEKISSNTIYVDSETLKSAIIQVQYQEEIEESDESEELVCGICGDDFDDKNVLMEHVKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -