Tdro000707.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059582.1:2366841-2377644[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 6.5e-06 0.0027 20.4 1.0 1 23 242 264 242 264 0.98 2 30 0.0028 1.2 12.1 1.9 1 23 287 310 287 310 0.96 3 30 0.00045 0.19 14.6 0.5 2 23 317 339 316 339 0.96 4 30 0.00077 0.32 13.8 1.2 1 21 359 379 359 380 0.94 5 30 0.049 20 8.2 0.7 3 23 476 496 474 496 0.96 6 30 0.0065 2.7 10.9 0.1 1 23 501 524 501 524 0.94 7 30 0.00012 0.051 16.3 0.1 1 23 592 615 592 615 0.96 8 30 0.0084 3.5 10.6 0.4 1 23 621 644 621 644 0.96 9 30 0.13 52 6.9 1.5 1 23 657 679 657 679 0.97 10 30 0.0034 1.4 11.8 2.8 3 23 724 745 723 745 0.96 11 30 0.33 1.4e+02 5.5 0.8 2 23 808 831 807 831 0.93 12 30 3.2 1.3e+03 2.4 0.0 2 23 840 862 840 862 0.84 13 30 0.035 14 8.6 0.2 2 23 869 891 868 891 0.95 14 30 1.4e-05 0.0056 19.4 1.2 1 23 899 921 899 921 0.98 15 30 0.00022 0.091 15.6 3.3 1 23 995 1018 995 1018 0.97 16 30 0.00072 0.3 13.9 0.5 2 23 1025 1047 1024 1047 0.95 17 30 0.0012 0.51 13.2 5.9 1 21 1074 1094 1074 1095 0.95 18 30 0.0028 1.2 12.1 1.8 2 23 1109 1130 1108 1131 0.93 19 30 0.49 2e+02 5.0 2.8 1 23 1134 1156 1134 1157 0.95 20 30 0.13 56 6.8 0.4 2 23 1164 1187 1163 1187 0.90 21 30 1 4.2e+02 4.0 0.2 2 23 1195 1217 1195 1217 0.95 22 30 3.8 1.6e+03 2.2 0.0 2 23 1224 1246 1223 1246 0.87 23 30 0.17 69 6.5 3.1 2 23 1255 1277 1255 1277 0.96 24 30 0.079 33 7.5 0.9 2 23 1283 1305 1283 1305 0.93 25 30 0.055 23 8.0 0.5 1 23 1366 1389 1366 1389 0.96 26 30 0.0072 3 10.8 2.4 1 21 1417 1437 1417 1438 0.95 27 30 0.52 2.1e+02 4.9 1.3 2 23 1533 1555 1532 1555 0.94 28 30 2 8.4e+02 3.1 0.3 2 23 1562 1584 1561 1584 0.94 29 30 0.32 1.3e+02 5.6 1.8 1 23 1595 1617 1595 1617 0.97 30 30 1.7 7e+02 3.3 0.3 3 19 1626 1642 1626 1643 0.96
Sequence Information
- Coding Sequence
- ATGATCGGTTGTCGAAGGGACTGCCTTTACCCGGCTGAAACCTGGCAGATCGTCCTCAAGTTCCCAGCATATCCCGTCGTACCACCTTCCACATACCTGCTGTACCCGCATCGTCCGGGCAGGGGAGACATGCCCCGGCAAGGTATGGGTTCCTCTCGTGCAGGTCCCCAGGACCGGCCCGGCCAGATTGGAGAATCTGATCGGCTGCCAAAGTGCTTGTGCTATCGTTGCATGTACAACTTGGAGAACTTTTACGACTTCAGAACAGCATGCATTAACGCGGTTGCTCTTCTGGAAAGATGTCTACCGCCAGACGCTACGGTGAAGATTGAGGAACAAATCGATGAGGAGCCTTATTCACAATTGCGTTTGGAACTTTTGAAAAAGGAAAGCATGCCAGTACTGATCCCCGAGGCACCAGTAGTCAATCCAAATGCCGCATTGGGAACACCTCCCCGGCTTAACTCGGACGGGGAAGTCGAGCAGGAGCTGGAGGAAGTCGTCGAACACAGTGGGACTGatgaagAAGTAGCCGGAGCGGATGATCCGGAGGACCGGAAGTCGGATGAATACGAGATGGATATGGAGACCAATCCTAGCGACTTCCTGGAGATGCCGCCGATGGTCACCGACGACGCCGAAGAACAGGAAACGGCGGCGAACGCCTCCCTGGCTATGCAGGACACGGGTATCTTCCAGCACAGGTCCGAGCAGCATGAGGTCTACGTCTGCTCTCTCTGCAACAAGGCCTTCAGCTCGAAAGGACACCTGTCCCTACACGCTCGAATACACGTCGGTGCCGGCGACGTAATCGGCGAAAAGGTTATTACCGACGATCACACGTCCTACAAAAGGCCCTATCAGTGCGATCTCTGCAACAAATCGTACTCGACGGCAAAACATCGTTGGGGCCACGTCTCGACGACTCATAGGGGTCATCCGGCGGTGACATGCGGATATTGCTCAAGGATCTACTCGACGCGCACGAATCTCGAGGAACACGTAAAGTCGAGGCACGCGGGTTTGCCGCCCCCACCGGAGCTACCCGGACCCTACATCCAGCCGGAAACCAGGCACCAGTGCAAGACCTGCCCGAAGATGTACACGAACGTCACCGACCTGAACAAACACAGCAGAATGTGCCTGGGCGATCCTCGTAAGGAACTGACCAATTCCACGCCGGTGCAGAAGATGAAGGTCGAAGCTGCCTCCGATCTGTCCAGCATAGATTCCGATTACGAGAGTAGGGATTACAAAAACGCCGAGGCAAAACTCGCGAAGAATCCCCAGCTCACGATACTGAAGCAAGCGCTGACCAAGGGCGACAACATGAGACGCGAGTACGACGAAAAGAATAAGTTAACCAACAAACCGAAAAAGCAAAAAGGTGCAGAGGAAGCAGATGTTGATGTGAAGCAGTGGTTCTGCGAAGTTTGCAAGCATATTTTCACGTCCATGGAGGATTACAGAGAGCACGAGGCGACGCACGGAGACAAGCCCTACGTGTGCATACTCTGCGAAAAAGACTTCGCGTTGAAGTCGGCCCTGAGCAGACACATACTGACCTCTCACGGCGTCGACCCGACGCCCATCATCGACAGCGacaaatgtctaaaaaaatcaGCATCCAACCAAAACGCCACGAGCGCCACCGCCATCATTACCAAAGAGGTTTCGATATCGCCATTTTCTCCTGATAACGAGAATCTCGAAAACGATGAGGAAGAAGTCGAAAGCGGCCACGAAAACAACATGGTCGAACTGGAAACGGTTTTCGTTTGTGAAATTTGCACCAGAGACTTTAACGATCGCGCCTCCCTGTGGTTGCACATAAGAGCGACGCATAAGGAATACGCGGCCTTCGCATGTGGCGTCTGCTTGAAAATCTGCTCGGATAATGCGCAATTACTGAATCATGTCAATATGTATCACGGAGGCTCGAAACTTTTGATGTCGGAGCAGCGAAGGTACAGTTGCACGATATGCGGCAGGCAACACGACTCTCGGAAAAAGTTGATAACGCACGTGTCAATTCACAACGTCGATCCGGGTTACGATCCGGCAAGTTTCGTCCAATTGAACAGCAATTACTATAACGAAAATTTGAACAGCAACGAGCCCCACGATTTAATCATGGACTGCGACCCCGAAGAAGGCGAGCGGGTCGACTGCTACATTTGCTGCAAATCGTTCCCCAACGAAGACCATCTTATTAGGCACCAAAGGAACGCTCACAAGTCCGAGCCCATGACACCGACTGGGGAATTTGGAGGCAACGGGAACGCGCATGGACAAAATGGAAACGGAAATCGTGCTCAATATCATTTGTTCTTTGTTTGCGAATTGTGCGGTAGTTCCCATCCGAGCAAGTGGGAGCGGTGGCTGCACGTCAGCAGCACGCACAGCAACGAACCTTCCATTAGAtGTGAACGAGACGATTGCGCGAAGATCTTTGCAACGAAGTCGCTGAGAAACGAACACGCCCAGCACCACATGCTCCAGGGTAGTTCCCCCAACACCTGCGAGATATGCGGCAAGCTCTGGGGCAGCCGGGTGGATTATTGGAAACACGTGATGGGAGTCCACTCGGACACGGTGCCCTTGATCTGCGGAGTTTGTTTGAAAGTCTTCCCCGACGTGCTGCAGTTGAGCCACCACGTGAAGACCCTGCACTGGCCATTGACCAACGGGGATTTCAGCTGCGACATCTGCGGCAGACCGTACTCGAACAAGTCGAAAATGTCGCGGCACCGGAAGATCCACGGACTCGACGGAGTCGGGGCAGGACGCCAGAGTGCCGTCAACGAGTCTTACGCGAATCACAGCGTCGCCGACTCGACGATCCTGGATACTACCGCGGCTCAGGTCAGATTGGACAACGGGGCACCGCCGCAAAACGAACTGAGCTGCGAGATGTGCGGCGATCTCAAGTTTCCGTGCCTGGAAGACCTTTGCAACCACAGGCGAATGGCCCACAGCCTGTTCCCGTGCGACCTTTGCAACAAATGTTACGGTAGGACCTCGCATCTGTGGAAGCACGTGAATCGGGTACACAAAGGTCACGAGGACGTGACGTGTCGGTACTGCTCCAAGACCAGCGCGTCGAAGGATCATTTGGCCGCGCACATTGCCAAAATTCACAGGTACGAACCGGAAGTTAAACGGGACATGCGAGACTCGGTAAGCTCGAAGTCGATGAACGCCGAAGAAGAAGCTCAACATCACTGCGAAAAGTGCAACAAGAGCTTCCACAAGCGATACTTGCTGCGACGTCACATGAAAGGCTGCCAGAACTATCGTAAGGATCCTGGTGCCTTATTGACCCGGTGCCGAGCTTGCGAGAGGATCTTCAAAGACCGGGCGAGCTTGCAGAAGCACATCGAGAATCATCACAGCACGTACACCTGCCACCTCTGCAACGAAACGATCACCTCGAAGCTCGGCATCATGACGCACAATCGCGTCCACCACATGCAGCATCCGGACATCACCTGCGAACTGCCCACCTGCATGAAGCTCTTCCGCACGAAGGAGGACCTGGAGTCGCATCGCAAGGATCACAAGTATCACGGGACGCCGAACGTATGCGATTTCTGCGGCGACACCGTCGAGAACAAGCTCAAGCTCAAGATGCACATACTCTCCTTGCACCGAAACGAAATTGGAGTCTCGTGCGGCGTCTGCCTGATCCCGATGAAGGACCCCAAGGATTTGAAGAAACACGTGGAGGACGTGCACGAGAGCATCCTGCAGATGCCGAACACCTGCAAGGTCTGCGGGAAGCAGTACGCTTCCAAGTGGAAGGCCTTCGATCACACGAAGAAGTGCCACGGCAAGGTCTTCCGGACTTGCAAACAGTGCCTGGCGGTCTTCACCAGCGACGACGATCTCAAATCCCATTACGAGCACGTGCACAACGTGCCCAAGGACCAACTGGCGGCGTTCGAGTATCGGCTGGAGATCGGGCCGAAGGGCGACGAATACGATCCGTGCGAGGTCGTCGTCAAAGAAGAACCCGACGAACTGGACTTTGACGACGAGCCATTGGACGACGACTCGAACGAATCGAAACGGCGACGATCCATGACCGACACCTACGATTGCGAAATCTGCCCCGAAATCTTCCTGAATCACGACACGCTGTCCTCCCATTACAAAAACGTTCACAATACCGATCCGACGCGAATGTTCAAGAAGATGAAGCTGGACAAGGACAAAGCCAAGCGACAGATGCGGGATCGGGAGAACTTCGAGTGCAAGAACTGTCTTAAACAATTCTGCACCAAGACTCTATTTTGGAATCACATAAACGTCTGCACCAGACGCAACACCCCCATGTCAATTTTGGAAGCGCATTTGAAGAACAACAATCAGGTGAAGAACGAGCAACCGGAACCCGAACCCGATCCGATGCTCACCGAAACGAATCTCAACATTCCGGACTTTAACCTCTTCGAGGATATTAACATGCAACTGTCGGGACAGAAGCCCCTGCCGAGTTTAATGCCGCTCATGGCTTCCAAGTCTTCCTCCGGGTCCAAGTGCTCCAGGAAGGACTCGAGGAAGGTCTACGACGAATCGACCAACACGGAATGCGCCTGCGAAGTCTGCGGCAAACAATGGCCGGCGAAGAAGCATCTATGGCAGCATCTCATTCGTTTTCATCGCGCGGAAGCTGCGGTCACCTGCGGGGTGTGTTTGAAGCTCTGCACCACCTACACGGACCTGGGGGAACATCTGAAGGCGGCCCATCAAGCGATCCTGTCCACCGAAGGGAACAACTTTACCTGCAAAGTTTGCGGGAGGTATCACAACGCCCGGAGCAAGCTTCTCCTGCACATGAGCATTCACATAAATTGCAGTTTGAACACGTGGTGCTACAAGTGCCAGAAGAATTTGGAGACCCAGGAGAAGCTTCAGGAGCACGCGCCGGTTTGCATGGGCAAGCAACCCAGGAACATGACGGAACATTCGAACGAGGGCGCGGAAGACAGCGAGCGCGCCAAGAACGACGCGGACGAGAAGGGAAGCTTCATCGGGGACGAAACTTCGATGATCGGCGACGCGGAAGAGGTTGGATTCGACTCCGACGACGACGCTTCGGAGAACGGCGACGATTCCAACTCCGACGACAAGTCCGACTCGGACAGCGACAGCGACAGTTCCagcgacgacgacgacgacgacgacgacgatgacgataaATCCAGATCCAACAGCAGATCCTCTAGCTGCTCCAGCGACAGCGACGACTCCAACAATGTAGAAATGTCTGGAGAGAATCAAGATCAGAGGAGGGAGGAGACTATGAGTATCGGAGAGGATGAGAATTCGGATAACGAATCCGAGAAGAAAGAATCTGGAGAGGCGGAAGAAGAAGGTTCGGAATCTCCGGACAAGTCCGAGGCTGGCAGTATGGACTATTCCGACGACGAAGGACCGCCAGTTTTGAGCCCCATAATGCCCTTGTTGCCCAAAGAGGACGAACCTGAAGAATCCAGCGAGGAAGAGGAAGAGGAGGAAGAGGAAGAAGAAAACGAGGAAAACGGCGAATGTCAGTCAGAAAACGAAGGGGAAGTGGAGGAAGTAGAGATCGGAGAGCTGGAGGAGGAAACCCAGGTACACGCCCAAGTGCTGGAGGTAGACGCGAATCAAGTTCACGACATGAACGGAACCGTGCTGATGCTGGCCAACGACGCCGACGGCAACCAGATACTGATCGAGCGAAACATGTCCGAGTTGGCCGACGAAGTGTCCGGACAGGAGTTGACGCAGTACGTTTACCAGGACGGCGGAGCTTTCGAGCTGGAGGACTACGAAGCTATGGTCGAGGATCAGAGGCTGTCGGATACCGGACTGAACCTGGACGGTGTCGATCACATAGAGGCGATGGCCCACGAGGAGGTGGAGGTGGAAGCCGTTTCGGACGAGGACGAATTCGGTATCAGTGCCAAAAGCTAA
- Protein Sequence
- MIGCRRDCLYPAETWQIVLKFPAYPVVPPSTYLLYPHRPGRGDMPRQGMGSSRAGPQDRPGQIGESDRLPKCLCYRCMYNLENFYDFRTACINAVALLERCLPPDATVKIEEQIDEEPYSQLRLELLKKESMPVLIPEAPVVNPNAALGTPPRLNSDGEVEQELEEVVEHSGTDEEVAGADDPEDRKSDEYEMDMETNPSDFLEMPPMVTDDAEEQETAANASLAMQDTGIFQHRSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHVKSRHAGLPPPPELPGPYIQPETRHQCKTCPKMYTNVTDLNKHSRMCLGDPRKELTNSTPVQKMKVEAASDLSSIDSDYESRDYKNAEAKLAKNPQLTILKQALTKGDNMRREYDEKNKLTNKPKKQKGAEEADVDVKQWFCEVCKHIFTSMEDYREHEATHGDKPYVCILCEKDFALKSALSRHILTSHGVDPTPIIDSDKCLKKSASNQNATSATAIITKEVSISPFSPDNENLENDEEEVESGHENNMVELETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENLNSNEPHDLIMDCDPEEGERVDCYICCKSFPNEDHLIRHQRNAHKSEPMTPTGEFGGNGNAHGQNGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSSTHSNEPSIRCERDDCAKIFATKSLRNEHAQHHMLQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVLQLSHHVKTLHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGVGAGRQSAVNESYANHSVADSTILDTTAAQVRLDNGAPPQNELSCEMCGDLKFPCLEDLCNHRRMAHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCSKTSASKDHLAAHIAKIHRYEPEVKRDMRDSVSSKSMNAEEEAQHHCEKCNKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVHHMQHPDITCELPTCMKLFRTKEDLESHRKDHKYHGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHESILQMPNTCKVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDDDLKSHYEHVHNVPKDQLAAFEYRLEIGPKGDEYDPCEVVVKEEPDELDFDDEPLDDDSNESKRRRSMTDTYDCEICPEIFLNHDTLSSHYKNVHNTDPTRMFKKMKLDKDKAKRQMRDRENFECKNCLKQFCTKTLFWNHINVCTRRNTPMSILEAHLKNNNQVKNEQPEPEPDPMLTETNLNIPDFNLFEDINMQLSGQKPLPSLMPLMASKSSSGSKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTTYTDLGEHLKAAHQAILSTEGNNFTCKVCGRYHNARSKLLLHMSIHINCSLNTWCYKCQKNLETQEKLQEHAPVCMGKQPRNMTEHSNEGAEDSERAKNDADEKGSFIGDETSMIGDAEEVGFDSDDDASENGDDSNSDDKSDSDSDSDSSSDDDDDDDDDDDKSRSNSRSSSCSSDSDDSNNVEMSGENQDQRREETMSIGEDENSDNESEKKESGEAEEEGSESPDKSEAGSMDYSDDEGPPVLSPIMPLLPKEDEPEESSEEEEEEEEEEENEENGECQSENEGEVEEVEIGELEEETQVHAQVLEVDANQVHDMNGTVLMLANDADGNQILIERNMSELADEVSGQELTQYVYQDGGAFELEDYEAMVEDQRLSDTGLNLDGVDHIEAMAHEEVEVEAVSDEDEFGISAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -