Tdro022010.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059582.1:167721186-167730396[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 7e+02 3.3 0.2 2 19 198 215 197 217 0.93 2 15 0.95 3.9e+02 4.1 3.0 2 23 276 298 276 298 0.94 3 15 0.00035 0.15 14.9 0.2 3 23 306 326 304 326 0.97 4 15 4e-06 0.0016 21.0 3.0 1 23 332 354 332 354 0.96 5 15 0.00013 0.053 16.3 3.3 1 23 363 385 363 385 0.96 6 15 5.3e-05 0.022 17.5 1.6 1 23 391 413 391 413 0.98 7 15 3.8e-07 0.00016 24.3 0.7 1 23 418 440 418 440 0.99 8 15 0.0074 3.1 10.7 4.8 1 23 447 469 447 469 0.98 9 15 4.7e-05 0.02 17.6 0.2 2 23 489 510 488 510 0.96 10 15 0.00013 0.056 16.2 0.3 2 23 518 540 517 540 0.96 11 15 0.16 67 6.5 0.4 1 23 546 568 546 568 0.96 12 15 0.0032 1.3 11.9 4.3 1 23 574 596 574 596 0.99 13 15 0.00012 0.052 16.3 1.4 1 23 602 624 602 624 0.96 14 15 2.2e-06 0.00089 21.9 3.1 1 23 630 652 630 652 0.98 15 15 0.0046 1.9 11.4 2.1 2 23 658 679 657 679 0.90
Sequence Information
- Coding Sequence
- ATGTTAAACTTTAACAGAGATGCACAGGTGGATACAAACGACTGCATCGATTTGTCTTACTCTGACACAGATAAGCAACAAAATGTTGGTGAATTATGCCGATTTTGTGGATATAATGCATCGGAAGGCATTGAAATATTTGGTAAGAAAGGCCACGATCTGGCTCTAATCTCAAAGATAACATTAACTATTCCTATTCAAGTACGCTCAGATGATAAATTGCCACAGAAAATGTGTTCGAATTGCTACGATAGGCTAGaagatgcgtataatttaattataacttgtatagaaacagaaaataaattgaaacaaatcctcaaaattcaagaaaatGATTGTACAATAGACTTGTCTAATGATTTGTGTCTGGAAGGAGAAGAAGCGCAACAAGGGGTAATATTTGATGTGGATAAAAATAACGAAGTGCTCAATCCGGAACTGCCAGAAGTTAATTTATCGATTGAAATTTTACCAAACTCTTCAGTGCTTAATACTTCCACCGAATTACAAGATAATTGTACTTCAATCGATGCaggaaataatttacaaaatcttgAAGTTTTACAAGAAGTGGAAAAGGATTACCAGACCTGTTTAACTTGTAAGGCTGTCTTTCAGACTAAAGAAATTCTAAAGAAACACGAAGTTTTATgtagcaagaaaaaaaatactacgaAAAACCACAATAATTCCACAATTAGTGCAAGCACCACCAAAGAAGTAGAAAATCGGAAGACAGTACTATGCGAATCTAAAGCAACAGAAGTCAATGTTACCAAAAAGAATGATTGgatcaaaataaaatcaattccTGTTAAACGAAGATGTGGGCACTGTAATGATATATTTTCTTCGAGGAAAGACATACATTATCACATGGCTCAGAATCATAATGGGAAAAAGTTGTTTGGATGCGGTATGTGTGATAGAACTTTccaaaaatggtcaaatttaGATGTTCATGAAGCTACTCACAGACAAGAAAAACCGTATTTGTGCGATCAGTGTGGAAAGAGTTTTAAGCACTCGAATAACTTGCGAGGTCATAAGCGAATTCATTTAGAGGAGTCCAAAAAGAAACGTCACATATGCGATGTATGTGGAAATGCTTTCAGATCcagATTTCATCTTCGGGAACATATgaattttcaccagggtaacAGGCCGTACTCTTGTGAGCAATGTGGTAAAGCTTTCTTCAAAAGAATACAATTGCGACAGCATAAATTGTCTCATGGAGTTCATAAATACACATGTCCGATTTGCGGAATGACCTTTAACAGACGCGGAAATATGAATACTCACGTTAAACGACATAACAAAACTGATGGAACGTATACCTGTAGTGTATGCAACCATAAATGTAACTCGATGAGCGCGTTGAAGATTCATCGCAAGGAACATTCGGAGCAAGAAATCATTGACAGTGTACGTAAACGCTCGGCTGATCTCATCGCTTGGCAATGTAAACTTTGTCCAAAAGTGTTTCCAAAACGCGAATCTCTTTTAAATCATGAACGAGGACACTCCACTGAAAAGTTGACGGTAGAGTGCGACGAGTGCGGAAAACAATTGTCTAGTAAGAGTTCATTGGCTTATCACAAGAAATCCATACATTCGACGGAAAGACCACATATGTGCCAGTTTTGCGGTGATGCCTTTATCTCTAAAGAGGCTCGATTGATTCACGAAAGGATACATACaggtGAGAGGCCATACGTGTGCAAAATTTGCAACATGCAATATCGATGTTCGAGCAATTTAAGCCAGCACACGAAAACTCATTTGGAAGTTAGACCACACATTTGTCGATTTTGTAGTAAAGGATTTACTCGTCGGGGTGCTCTGACGGTTCACGAGAGGATCCATACCGGGCTCAAACCGTTTACTTGCGATACTTGTGGAAAaacattttcacagaaaaaCGATATGctgaaacacaaaaaaacacacaaagAGAAAAAAGTACAATGCGAATGTTGCAGTGAAAGTTTCTCAACGAAGAAAGAACTACTAAAACACATGCCTACGCATGATTCTGATTTGCTTTTAATGCAGTCTACGACGATAGAAGAGCCTACCTTAAGCTACGTCGTCGTGCCCCAAGACGCAAATAGTTACGCGCTAAGCATCGATAGTTCCATGGCGATAGTAGATGAATTGGAACAAACCTTGAATAATACTCTTGTAGATTAA
- Protein Sequence
- MLNFNRDAQVDTNDCIDLSYSDTDKQQNVGELCRFCGYNASEGIEIFGKKGHDLALISKITLTIPIQVRSDDKLPQKMCSNCYDRLEDAYNLIITCIETENKLKQILKIQENDCTIDLSNDLCLEGEEAQQGVIFDVDKNNEVLNPELPEVNLSIEILPNSSVLNTSTELQDNCTSIDAGNNLQNLEVLQEVEKDYQTCLTCKAVFQTKEILKKHEVLCSKKKNTTKNHNNSTISASTTKEVENRKTVLCESKATEVNVTKKNDWIKIKSIPVKRRCGHCNDIFSSRKDIHYHMAQNHNGKKLFGCGMCDRTFQKWSNLDVHEATHRQEKPYLCDQCGKSFKHSNNLRGHKRIHLEESKKKRHICDVCGNAFRSRFHLREHMNFHQGNRPYSCEQCGKAFFKRIQLRQHKLSHGVHKYTCPICGMTFNRRGNMNTHVKRHNKTDGTYTCSVCNHKCNSMSALKIHRKEHSEQEIIDSVRKRSADLIAWQCKLCPKVFPKRESLLNHERGHSTEKLTVECDECGKQLSSKSSLAYHKKSIHSTERPHMCQFCGDAFISKEARLIHERIHTGERPYVCKICNMQYRCSSNLSQHTKTHLEVRPHICRFCSKGFTRRGALTVHERIHTGLKPFTCDTCGKTFSQKNDMLKHKKTHKEKKVQCECCSESFSTKKELLKHMPTHDSDLLLMQSTTIEEPTLSYVVVPQDANSYALSIDSSMAIVDELEQTLNNTLVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -