Tdro067833.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059585.1:92408570-92418140[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.018 7.3 9.6 1.3 2 23 280 302 280 302 0.97 2 20 0.078 32 7.5 3.5 1 23 373 395 373 395 0.98 3 20 0.073 30 7.6 0.5 1 23 444 466 444 466 0.98 4 20 0.026 11 9.0 0.5 1 20 536 555 536 557 0.93 5 20 0.066 27 7.8 1.7 3 23 599 619 597 619 0.96 6 20 0.0027 1.1 12.1 0.4 1 23 679 701 679 701 0.96 7 20 0.00046 0.19 14.5 0.1 1 23 707 729 707 729 0.97 8 20 7.7e-07 0.00032 23.3 0.4 2 23 772 794 772 794 0.95 9 20 3e-06 0.0012 21.4 2.4 1 23 800 823 800 823 0.98 10 20 0.00033 0.13 15.0 0.8 2 19 832 849 831 854 0.89 11 20 0.00012 0.049 16.4 0.8 1 23 862 884 862 884 0.94 12 20 0.056 23 8.0 0.2 2 20 932 950 931 950 0.95 13 20 0.00068 0.28 14.0 0.0 1 23 979 1001 979 1001 0.97 14 20 0.0014 0.59 13.0 3.6 1 23 1014 1036 1014 1036 0.97 15 20 0.00098 0.41 13.5 0.5 2 22 1055 1075 1055 1078 0.89 16 20 1.9 7.8e+02 3.2 0.2 2 23 1120 1142 1119 1142 0.93 17 20 0.0052 2.2 11.2 3.5 3 23 1169 1190 1166 1190 0.88 18 20 0.0012 0.5 13.2 0.4 1 23 1198 1222 1198 1222 0.96 19 20 0.0023 0.97 12.3 1.7 1 23 1227 1250 1227 1250 0.98 20 20 0.031 13 8.8 0.7 2 23 1281 1303 1280 1303 0.94
Sequence Information
- Coding Sequence
- ATGACCGACACTCCGGTGCAACTTTCGCCGGCGGGCGACGGAGATGCTTCAAAAGTCGAGGATTCCAAGGAAGAAGGCTTTGAAAATGCCTGCCGACTCTGTCTGACCACGGATTTGGAGAGATGCTCTATCTTTGGCGTGCCACACGGACCCGTGCCTTTTGTCGAGAAGATTCGCTCCTGCTTATCCATCCAGGTTTCGACAAATGATAAAGAATCTACcttaatatgtacaaaatgcaTTGAAAATGTGAATCAATGGTATACCTACAAGGATACGTGCTTGCAGTCACAAGACAAATTTATGCAATGGCTTGTAAAGACGGGACTGTTCCCTCCACAAACAATTACGATAAAAGAGGAGCCTGTGGATTTAGATTACACAGAAGACCCAACGGTTGAGATCCTATGCGATTCAGTGCCTCAATTGAATCAGATGCACTTGAACAATGGGACTACTATGGTTGCCATTCCAAATAACATTGATCTTCTCAGTGAAGAGAATTTTATATCGTCTGCCAGCAACTCCCAAATCATATCCCCCATAAGGATAGTAAACAAAGAAGTAGAAAAGCCGAGACAAGAAGGCGAAAAAAATTTAAGCATTACAAACGTAAAGAGCGAGCCAATGGAAAGCGACGATTACAGTGTAGAAATAGACTTATCAGGCGGAAGCGAACTTCTGCTGAATCCCATGGCGGTAGCTAGCGGAAAAGATGCAGAAAGAGTGATGGAAGCGGATTCTACCCAAAAGTTTAACAACAAAGGCTACGCTGCCAAGAAGAAGATTCGTCGTGGACCACATACGCATTATCGTGGAACTCGGGTCTTCAAAAGAAAGTGTGTTTACTGCAATATCAATTTAAGTTCCAAAACCTCTTTCGCCAATCACATGTCAAGATTCCACGATTATCTGCCGTACAATAATGTACCTTCTTTAGACCTCTCACCTCAGTTGCCTCCTCCGCCGGTagcgaagaaacaaaaaaagaagataCCGGAATTGACTGAAAGAATAGCGTACCGGGCAGACAGCGCTGTTGATCAAACGGCAGGTATCGACCGCGCAGCTCCGTTGACTCCggttcaacaaaatattatcagtCAACTGAAAACATATTCTTGTTACTCTTGCCAACAACAATTTGACGATCGACATAGTACTTTAAATCATATTCGAATGCATATGCCTGACCTTAGGCCGTACACCTGCATCGCTTGTTTGACTGAATTTCCCAATAGCGCTATTTATAAACAACATTGTTCGGTGTCGCTCGATTGCGCTATGAAGATAGCCATGGTCATTCCTAAAGTTGGTCAGGAGAAATATTTTACGTGCAACATGTGCCTGCGCCCAATGCCAAATCGCTCGGAGCTTTTGTACCACTTATCGAAACACACAGCCAAAACTTACGAGCCGACAGCTTCCTCGCGTAGGCCGCCTCCTAAGCTGCGCCCGATGGTGCCAGGATTGACTCCGTTGGCGCCCCAACACATTCAACAAGCTCAGGCACAAATTCAGCCGCCGCCTTACGTAGATGATGGAAAACCGTCGGTGGCACCTGAAATTCCTGGACCTTACGTTAACGGAGATCCTTCCCATAATCACATGTGTAATTTGTGTGGTATGATTTATAGATACAAACCTAATATGTACAAACATAGAGAACTATGCGAGACCCTGCCAGAAACTGGTCGAACATCCTACAGATGCGTACATTGCCGAATGACATtcctaaactttaaaaaattccacaCGCATGTCCTGCAGGAGCATAAAAAGAAGGAACTCGCGTGCTTTGTCTGTCATGCTAAGTACAAGAGTCCCGATGATTATTTGATGCATCACGAGACTCATAAACCGTATTCGCTCAATCAAACTGGCATTGTTGAGAGAATGGACTATCCACTGGAGAGATCTGTTCCAAGCGCTCAACCTTCCATGGATGTAACTGAACAGGATGAGCCAACTCTTGAACAAGAGTGGGACGGTTACGCCGACGACGTTCCTGTTAACAGTATTGTGGAAGAAAGGCATAATTGTGCATTGTGTAATTTGGAATTTGCTACAAATGCAGAACTTACAGAGCATCGTAACTTGCACCTCAAGGTCAAGATTTATTCGTGCGTTATTTGTCGAAGCATGTTCAGCAGCTCCGGTGCTCTGGAAATTCACATGAAGGATCACGGCATTGAAGACCCCAAGGAACAAAATGCTAACAGTTCGTGCGTCGAGTATGGTCGGTCGGACAATTCGAAAATGAACGATTCAGATCTGCATATGTCGGGTTCGTCGGATCCGGGTGGTCGAAACGTATGTGCCGATTGTGGTCGAACCTTTTCGAATCTCGCAAACCTAAAGAGGCATCAGAAAAATGTCCATACTTTCGTTTCAACTTATACTTGTTCCGAATGTGGAAAGACATTCAGGGGTAAAGAAAATTACGATCATCATATTAAGACCGAACACAGCAAATCACCCAAGCATCTCATGCGTTGTCCCAAGTGCCCGAAAACTTTCGCTTATCAAGCAAATTTGATCCTGCATTGTCAGAATGCTCACAGTGATCATCAGTCATCTGGATTTTCTTGCGACTTGTGTGGAAAGACATTTAAGGAGGAACAGTCGCTGAAAACTCACCGAGGATGGCATATGCGGACAAACAACCGCCTCAGCATCGATAAGAGCCGTCTCTCCCTGACATCGGACAGTGCGCCTGTTGCCAGCACACCGAAACCAGCTAAAGCGAGAAAATCATTCCCGAACCCTCCGCAAAATCAGCTAACTAATCTACAATGTCAGGTGTGCGATGATCATTTCTCAGACGTGGCTGAACTCAGAAAACATCTGTGGGAATTGCACTGCTCAAGAAATAAATCCGAGCCGAATTTCGAGGATGGTGAAGAGGGAGAAGATGACGAACCAATCTCCGAATTCAGGTGTGAAATTTGCCAGGATGCCTTTGTCGACGAGGAGTCTTTGCGAGCTCATATGGAGTGGCACGAACAGAATCCATATCCTGAGGAGCCTAAAAAGACTTTCTACTGCGAAACTTGCGGGAAATACTACAGCAATCGAAAGCTGTACTTGAGGCACAAGAAGTTACACAAAGTCATACCAATAGCGACGATGAAACTGCAGTCCCTGAACATGAAGCGGCCAACATGCGCGACCTGCGAAAAGACTTTTGCTACCGAAGCTTCCCTGAAGCGACACAAGGCTATGACGTCACATTATCAAGTAAAACGTCCAGTGAATCCTGTGCGAAAGTCTTCGGTAAACCAGGAACCTCTCCAAGTGAACTTTAAGAAAGAACCCGGTCTACCCGCAGAAGCGCCGGTTAAGAAGCGACCAGTCACGTGCCTTATTTGCAAATCAATTTTCCCCAGCATGAGTGTTCTATATCAACATAAACAGCTCGTCCACAAATCACAACCGGGCAAAGACAAATCAGTGACGGTCGAAGAATGTGTACCGCTGCCCGGTGCCGAGGGCTTTGTATGCTGTAATATCTGTGGTAAACAATTCCCTGGAATTTCAAACCTTAAGCAGCACTTCTCGCACAAGCACAAGCAACCTCAGAATGCTATTTTCCCTTGCAATACGCCAAATTGCAAGCTCGTTTTCAGTACCTACAACGCACTTAAGAGTCACGAAATGACACATTCGAGCATGATTTATAGCTGTAACCTGTGCGACCGCCACGTTTTCAGTCGTGGTTCGATGGTCAAACACATGATGACACTGCATAAAGCAGTCTATCAATCCGGGGCCGACAAACAAGTGCTGTATGCTGAAACGGATCTGTCCGCGTACGTTGTCAAAGGTGCCGAAGGTACGGTTTGCCCCAAATGCAAAATTAAGTATCCAAACATGAGAGCTTTGAAgattcattatttcaaattccACGACAAACCTTGA
- Protein Sequence
- MTDTPVQLSPAGDGDASKVEDSKEEGFENACRLCLTTDLERCSIFGVPHGPVPFVEKIRSCLSIQVSTNDKESTLICTKCIENVNQWYTYKDTCLQSQDKFMQWLVKTGLFPPQTITIKEEPVDLDYTEDPTVEILCDSVPQLNQMHLNNGTTMVAIPNNIDLLSEENFISSASNSQIISPIRIVNKEVEKPRQEGEKNLSITNVKSEPMESDDYSVEIDLSGGSELLLNPMAVASGKDAERVMEADSTQKFNNKGYAAKKKIRRGPHTHYRGTRVFKRKCVYCNINLSSKTSFANHMSRFHDYLPYNNVPSLDLSPQLPPPPVAKKQKKKIPELTERIAYRADSAVDQTAGIDRAAPLTPVQQNIISQLKTYSCYSCQQQFDDRHSTLNHIRMHMPDLRPYTCIACLTEFPNSAIYKQHCSVSLDCAMKIAMVIPKVGQEKYFTCNMCLRPMPNRSELLYHLSKHTAKTYEPTASSRRPPPKLRPMVPGLTPLAPQHIQQAQAQIQPPPYVDDGKPSVAPEIPGPYVNGDPSHNHMCNLCGMIYRYKPNMYKHRELCETLPETGRTSYRCVHCRMTFLNFKKFHTHVLQEHKKKELACFVCHAKYKSPDDYLMHHETHKPYSLNQTGIVERMDYPLERSVPSAQPSMDVTEQDEPTLEQEWDGYADDVPVNSIVEERHNCALCNLEFATNAELTEHRNLHLKVKIYSCVICRSMFSSSGALEIHMKDHGIEDPKEQNANSSCVEYGRSDNSKMNDSDLHMSGSSDPGGRNVCADCGRTFSNLANLKRHQKNVHTFVSTYTCSECGKTFRGKENYDHHIKTEHSKSPKHLMRCPKCPKTFAYQANLILHCQNAHSDHQSSGFSCDLCGKTFKEEQSLKTHRGWHMRTNNRLSIDKSRLSLTSDSAPVASTPKPAKARKSFPNPPQNQLTNLQCQVCDDHFSDVAELRKHLWELHCSRNKSEPNFEDGEEGEDDEPISEFRCEICQDAFVDEESLRAHMEWHEQNPYPEEPKKTFYCETCGKYYSNRKLYLRHKKLHKVIPIATMKLQSLNMKRPTCATCEKTFATEASLKRHKAMTSHYQVKRPVNPVRKSSVNQEPLQVNFKKEPGLPAEAPVKKRPVTCLICKSIFPSMSVLYQHKQLVHKSQPGKDKSVTVEECVPLPGAEGFVCCNICGKQFPGISNLKQHFSHKHKQPQNAIFPCNTPNCKLVFSTYNALKSHEMTHSSMIYSCNLCDRHVFSRGSMVKHMMTLHKAVYQSGADKQVLYAETDLSAYVVKGAEGTVCPKCKIKYPNMRALKIHYFKFHDKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -