Tdro029617.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- Zbtb41_1
- Assembly
- GCA_030407085.1
- Location
- CM059583.1:79622363-79623880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0057 2.4 11.1 0.3 1 23 143 165 143 165 0.95 2 12 1.7e-05 0.0071 19.0 3.9 2 23 174 195 173 195 0.96 3 12 6.1e-05 0.025 17.3 9.0 1 23 223 245 223 245 0.98 4 12 0.0002 0.082 15.7 4.6 2 23 251 272 250 272 0.97 5 12 0.00061 0.25 14.2 0.1 1 23 277 299 277 299 0.98 6 12 2.4e-06 0.001 21.7 0.9 1 23 307 329 307 329 0.98 7 12 0.074 31 7.6 2.7 1 23 335 358 335 358 0.91 8 12 0.00013 0.055 16.2 0.3 3 23 371 391 369 391 0.96 9 12 7.4e-07 0.00031 23.3 1.8 1 23 397 419 397 419 0.96 10 12 1.9e-08 8e-06 28.3 0.2 1 23 425 447 425 447 0.98 11 12 4.8e-07 0.0002 23.9 1.6 1 23 453 475 453 475 0.98 12 12 0.00034 0.14 15.0 1.7 1 21 481 501 481 502 0.96
Sequence Information
- Coding Sequence
- ATGGTCTTTTATTCAGTATGTGACTTTTCACATTTCAGGTTTAACCAGCATGGATCTCCCACAGAGTTTTCTCCAATGGCaatatttgcaaaactgaacttaatgaagaaaaattcgGATTCGGAAAAATCAACATCTAATATTGGAGGATTTTCACCTGCACGTCAACAAGGAATCCACGATGGAAGTACTAAAGATCACAGCTATAGTGCAATAAAGCAAGAAGTTGAAGATTTAGAGGAAAATGGCAATAATAGCGATGGTTATAACAATGAGGGCGGTATTGCTGCAGATGATACGAAAGGTGAAGAAGATGTCAGTGACGGTGGTGCTTATGATGATGCTGATGATGATAATAGTGATGATGATGGTGAcgatgatgatggtgatgattGCGATAATGACAATGATGATTTACCGCTTACATACCTATGTAAGCTATGCAGCGTTTTCTTTGCAACGCAAAATCTATTAGATACTCACATACTCGAACATAACaccaaaaatcataaaaagaaaTCCTGCGTTCAATGTGGACGTGTTTTTCGCACTTGTATCAGCCTTACAAAACATATGAAGAAACACGCTGACTACAAAGAACGCAAAATTACTGGTAATACTGACAGAATTccgcttacaattaaaaaggaaaaatcggAGGTAGAATTTATGTGCAAAACTTGCAAAAAAGTCTTCCGGCATAAGAGTAATTATCACAAGCATCTCCTGCGACATACTGTAGGTAATCTGTCGTGTAAACACTGCCCGAAGAAATTTCGCCTCTTTCGAGATCTCACCCGTCATGAGAAAACTCACTTTTATCCAAGTTACATGTGTAAAGAATGTGATTATGAAACAACCGTGCTTGCCGCTTTAAGTATTCACATGCTTAGACACACGGATAAAGCAGACTTACCATTCAAATGTAATGAATGCGAGAAACGTTTCCGTAAAGCCGTCGATCTTCAAGAACATTATAATATCCATTCCGGGGAAAAACCGTTCTTATGTCAAGTTTGCGGCAACTCGTTTTACCTTAGACGACAGCTATCAGCCCACTGCAGACGAATGCATCCGGAAATAAAAGCTAACAAGGTGACGAGCACCGCCTGTGATATTTGTGGCCGTGTACTTGCGACCAAGCGATCTCTTTTTCGGCACAAGGAGAGCCATAATCCAACAAAACTCTATCTCTGTGATTACTGCGGCAAAAGTTTGAGTAGTGCAGAGCATTTGAAAAAACACAGGCGAATTCATACAGGGGAAAAGCCTTACGTATGTGACATTTGTGGAAAAGGTTTTACCGATTCGGAAAATCTAAGAATGCATCGACGAGTCCACACTGGTGAAAAGCCCTACAAATGTGATCAATGCTCGAAGGCGTTTAGTCAGCGATCTACTTTAACAATTCATAGACGAGGACATACCGGAGAACGACCTTATGTATGCCAAATTTGTCATCGAGGATTTTCCTGTCAGGGTAACCTAACAGCACATCAGAAGTCAACCTGCGTTTAA
- Protein Sequence
- MVFYSVCDFSHFRFNQHGSPTEFSPMAIFAKLNLMKKNSDSEKSTSNIGGFSPARQQGIHDGSTKDHSYSAIKQEVEDLEENGNNSDGYNNEGGIAADDTKGEEDVSDGGAYDDADDDNSDDDGDDDDGDDCDNDNDDLPLTYLCKLCSVFFATQNLLDTHILEHNTKNHKKKSCVQCGRVFRTCISLTKHMKKHADYKERKITGNTDRIPLTIKKEKSEVEFMCKTCKKVFRHKSNYHKHLLRHTVGNLSCKHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVLAALSIHMLRHTDKADLPFKCNECEKRFRKAVDLQEHYNIHSGEKPFLCQVCGNSFYLRRQLSAHCRRMHPEIKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCSKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -