Tdro080063.1
Basic Information
- Insect
- Trichopria drosophilae
- Gene Symbol
- -
- Assembly
- GCA_030407085.1
- Location
- CM059587.1:44831359-44835503[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.032 13 8.7 2.5 1 23 405 427 405 427 0.98 2 17 0.11 47 7.0 2.1 2 23 470 491 469 491 0.95 3 17 8.5e-05 0.035 16.8 0.4 2 23 574 595 573 595 0.96 4 17 9.9e-05 0.041 16.6 1.5 1 23 667 689 667 689 0.95 5 17 0.0052 2.1 11.2 0.4 1 21 695 715 695 719 0.91 6 17 0.089 37 7.3 3.7 2 23 793 814 792 814 0.95 7 17 0.00048 0.2 14.5 4.1 1 23 860 882 860 882 0.96 8 17 0.00029 0.12 15.2 0.7 1 20 887 906 887 908 0.94 9 17 0.03 13 8.8 0.3 2 23 919 940 919 940 0.97 10 17 3e-05 0.012 18.3 0.6 2 23 980 1001 979 1001 0.97 11 17 2.7e-05 0.011 18.4 1.6 1 23 1006 1028 1006 1028 0.95 12 17 0.00022 0.091 15.6 3.1 1 23 1034 1056 1034 1056 0.98 13 17 4.8e-06 0.002 20.8 0.4 1 23 1072 1094 1072 1094 0.95 14 17 3.9e-07 0.00016 24.2 0.6 1 23 1100 1122 1100 1122 0.99 15 17 4.2e-05 0.018 17.8 0.2 1 23 1128 1150 1128 1150 0.97 16 17 0.00016 0.065 16.0 4.1 1 23 1156 1178 1156 1178 0.96 17 17 0.017 7.1 9.6 0.6 1 20 1184 1203 1184 1205 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGAAgtaaatacgtcggaaatcccACAAAACGATGGGAGCATCGTTTCCGCGGTCGAAATATGCCGGGTTTGTCTCCTCGGCAACCTTATGATGCAAGATCTTTTCCAGGAAGGCGAAGATGCATCGCTGTCCGACAAAGCAATGACTTTTTCCACTGTTAAGatgtcACCAGAGGATGGACTACCCTCCAAAATTTGCTGCGACTGTGCAGTCAAATTGGAGTCTGCGTATAATTTCAAACTTCAAATAGAACAAGCGGATAATATATTACGCGAGAGGTTGGACTCGTTGAATATTAAAGCAGAACTTTTTTTCGGGGAGGAACTCGACAGAAACAGAGCAGTACAGATTCGAACACAGTTCGAACGAAATACTGTGTCGTTAAGCGAGCATACGAGAGACGAATCTTCGTTGCTAAAACATGCCTTGATGCAAGTCGACACGATACACGAACAACATCATTTGGAGCAACAAACTTTAAATAAAGTTGGAAGGACTTATATCACAGGTAGCGAATTACTTCGTATGCAATCTCAACAGTTGCAAGAGCTAGAGAACAATCACGAACTGCAAGACATCCACGAGACAAATATTACCGACATTGAAGAACATGTAGTCCAAGTTTCAAATAAAACCGAGCTTAgacaagaaaaaaacaaatgcaACCAAGGAATGGATAAAATCCAATGTCTTCAGAGGGAAAATGAAATGCACCAGATGCAAGAAATGCAAATCAGTCACATGCAAATGGAAACgattcaagaaaaacaattgtcaCAAATACAAGAAGAAGCTATTCGAGACATTATTCAAAACGATGGCCAATTTTGTGAAAAGGTAGaggaaaatattaatcaaaatttggaGCAACTGTCAGAAAATGGAGAATATATTTTATCTCAACAACCAGAGGCGTGTATGGAGGAAGAAACTTTGCCAACTTCGGTGCAAAATTCTTATATTGCAGATCTTGCAGACATTAAATTTGAAGAGTGCAAAGATGATATCGTTAATGAAAATTCGTTTCAAAACATTGATCCAAAAACGGAGCAAGAATCTTCAAACGAAACGCGTAGGAgtaaacgtaaaataaataagGAATCGAACGACCGAGACTCGGACGAAGAAAactactttgaaaatttgaatctcAGTTCCAGattaaaaaaagttcagaaaGAAAAGTCTGAAACGATCTTTTACATGTGCTATCTCTGCGATAAACAGTTTCTGTCCAAAGAAGTACTAAAGGAACATATGCACTCGCACGAAGAGGTTAGAAAAACACTTTCCCTTTCAAAGAAACCTCCCTTGAAACCCGATAAGATagataaattgcaaaaaactttaCCGTTAACCCAACCAAAAACTCCATCCTCGGGAAAACAAGCAAACAAATGTCCGCATTGTGGGAAGGAGTACCTGTATGTTAACTCGTACAGCAAACATTTGAAACAACACGAAAAAGAAAAACGAGGCAGAAAACTAAAATCGGAAACGTCCGACGCGTCTGTCGACGAAGACGAAACCTTAGATTTTGAAGATTACGACAATTATCAAAGTTCTGACGGAGATGAGGAAATGCCCGAAGAATCTGAAACCATTGAAAacaaaactgcagaaaataagaaattaaaaacgaacattAATAAATCTTTAGATAAGAATCAAGAAATTAAAACAGAATGTGTCAAGTACGAGTCTTTAAAATGCACCATTTGCGACAAAGAATTTGCTACCATGGAAACTTTAAGGGATCATCGATCGATTCATGTAATGCACGGCGTACTTACCGATCTAGACATCAGCGACGCGCAAGAGCAAGCTAATGGTGACAATAAAGAACTTATCGAAATAgatcaaaacataaaaataccaaaagaaATTTCTGTCGAAAAATCTGAAGTAAAATGCGACGGAATTCAAACTTTGCCCGAATCAAATAAAAAGTCTCTTTCCAAGCAGATCGAAACCCATCATACGAATTATGTTTGTAAAGTATGTCAGcagcaatttacaaaaaaagaacaGCTACGAAAACATGCCGAACAACACAACAAAGTAAAATCTTTTATATGTACACAATGCAGCAAAACTTTTGGTAACGAGCTCACTCTTCGAAATCATTTGATCGCTACGAATCATAAAACCACAATTCACGGTCAAGAATACGACCCGAACAAACGTTTAAAACGCGTAGCGGCTAAAGCGgcacaaaaaataattgataaaattagaACCGAAGACGGATTAGACGAATGTGACGACGACGACAGCGAATACGACAAGGATTCCCAAGAAGAAGTTGTTGACAATGAACTATTTCCTGCAGCGTCGAAAAAGCCTGCTCAAAGCAAGCCTTTGCACTGCGCTACGTGTAATAAGAAATGTGTTTCAAAACAGGTACTGGCGAAACATATGGAACAGCACATTAAATACGAGAAAGAAGAAAAAGCTAATCTGGAGAAGGCAAAGACTGTCGAAAAACGCGAAGTGGAAGACGATCGGCACGACaatgacgacgatgatgatTTCGGAGGTGGACTCGACTGGCCGGTAGACAATCACGAGTGTGTAACATGTAAAAAGCGGTACAGTACGAAGAAATCTCTCCTGCGACATCAGTTGCTGCACGAAGATCCAAACTTCGAGTGCGACATTTGTAACGTCAAATTTTACCGAAAAGATAAGTTGAAAGCGCATTACGACAAATGTTCCGAAAAGAATCCGGACCAAGTCCGAAAGTGTAACATCTGTGGggatagttttgaaaataatgacattttgCGTGAACACCGTGCAAGGCACGTAACCGAAGGAATTCTTACGGAAGAGGATTTGAAAGAAATCGAACCACGATCCGCAGACGAAAAGAAACTTACCGAAAAAATCCCTAGAAAACGAAGAACTGACATTGTGGGACTCGAATGTACCGAATGTAACAAACAATACACTTCTCGTAAAGGACTTCTGCGGCATATTCAAGTACACGAAGGGAAAAAATACCTGTGCGACATTTGCCCAAAGAAATTCTACAGACGagaacatttgaaaattcatgTCGCTAAACATAATATGATCAAACCGTACAAGTGCAATCGTTGCACCAAACGGTTTATTAAGGAGGAGCAATTAACGACTCATTTAACCAAACACGATCGAGCATTCAAAAAGACCAAAGATGCCGACACCTCGAAACGTTTTCTCTGTGAAAtatgttcaaaaagtttcacGCAGTCTACAACGCTCATTGCGCATCTTCGTGCACACAACGGCATTAAACCTTACGTGTGTGAGGTTTGTTCAAGGCCGTTTACTACGAATGCTTATTTGAAAATGCACATGAGAACGCATACGCAAGAACGACCTTACATTTGTCAATACTGTTCGCGAGCCTTTGCCCGAGCCGATACTCTGGCAAACCATCTTACGTCTCATACCGGCGAAGCAAAATATCACTGTAAATATTGCCCTAAAAATTTCCGAAGACTGAAATCTCTTAAAGAACACGTCTTTATTCATACCGGACAAAGACCATACGCTTGTCCAACGTGCAACCGAAGATTTAATAATAACGGAAGCCGATATGCGCATAGTAAACGATGTAAACAAAATCTGGTGCAGAATCAGGCTAGAACTCAAACTACGCAACAAATTTTGATACACCAGCCACAACAGTTGCAGCAAGACCAACAACAGCAAGAGCAACAACTGCAGCAAGTACAGCTGCATCAGAGACTGCAACAAACGATTGGACAAGCGCAAATTATTAAATCTCAAAATATTAAGACAATTACAATAACGAGGCCTGCAGATGCGATGACGCAGCAGGTTTTGCAACATCAAGAAATTCTCATGCCTCTTATTTTACCACTTACAGTTACATTAACCGACGTCGGGGACGAAGTAATCTTACCCGACAGTGCCAAGATCTTTACAACTACATAA
- Protein Sequence
- MDAVEVNTSEIPQNDGSIVSAVEICRVCLLGNLMMQDLFQEGEDASLSDKAMTFSTVKMSPEDGLPSKICCDCAVKLESAYNFKLQIEQADNILRERLDSLNIKAELFFGEELDRNRAVQIRTQFERNTVSLSEHTRDESSLLKHALMQVDTIHEQHHLEQQTLNKVGRTYITGSELLRMQSQQLQELENNHELQDIHETNITDIEEHVVQVSNKTELRQEKNKCNQGMDKIQCLQRENEMHQMQEMQISHMQMETIQEKQLSQIQEEAIRDIIQNDGQFCEKVEENINQNLEQLSENGEYILSQQPEACMEEETLPTSVQNSYIADLADIKFEECKDDIVNENSFQNIDPKTEQESSNETRRSKRKINKESNDRDSDEENYFENLNLSSRLKKVQKEKSETIFYMCYLCDKQFLSKEVLKEHMHSHEEVRKTLSLSKKPPLKPDKIDKLQKTLPLTQPKTPSSGKQANKCPHCGKEYLYVNSYSKHLKQHEKEKRGRKLKSETSDASVDEDETLDFEDYDNYQSSDGDEEMPEESETIENKTAENKKLKTNINKSLDKNQEIKTECVKYESLKCTICDKEFATMETLRDHRSIHVMHGVLTDLDISDAQEQANGDNKELIEIDQNIKIPKEISVEKSEVKCDGIQTLPESNKKSLSKQIETHHTNYVCKVCQQQFTKKEQLRKHAEQHNKVKSFICTQCSKTFGNELTLRNHLIATNHKTTIHGQEYDPNKRLKRVAAKAAQKIIDKIRTEDGLDECDDDDSEYDKDSQEEVVDNELFPAASKKPAQSKPLHCATCNKKCVSKQVLAKHMEQHIKYEKEEKANLEKAKTVEKREVEDDRHDNDDDDDFGGGLDWPVDNHECVTCKKRYSTKKSLLRHQLLHEDPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNDILREHRARHVTEGILTEEDLKEIEPRSADEKKLTEKIPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCNRCTKRFIKEEQLTTHLTKHDRAFKKTKDADTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCNRRFNNNGSRYAHSKRCKQNLVQNQARTQTTQQILIHQPQQLQQDQQQQEQQLQQVQLHQRLQQTIGQAQIIKSQNIKTITITRPADAMTQQVLQHQEILMPLILPLTVTLTDVGDEVILPDSAKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -